BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49970.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897878 jgi|Araly1|897878|Al_scaffold_0005_1844 1404 0.0
Ahg496860 jgi|Araly1|496860|fgenesh2_kg.8__2676__AT5G67385.1 207 1e-52
> Ahg897878 jgi|Araly1|897878|Al_scaffold_0005_1844
Length=1656
Score = 1404 bits (760), Expect = 0.0
Identities = 907/976 (93%), Gaps = 18/976 (2%)
Strand=Plus/Plus
Query 619 GACATTTTTGGGAAAGAGGCAAAGAAGATGGAGGCAGAACAAGAACATGAGAAAAGGTTG 678
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 682 GACATTTTTGAGAAAGAGGCAAAGAAGATGGAGGCGGAACAAGAACATGAGAAAAGGTTG 741
Query 679 ATCCTTGAAACAATAGTGAGTCTTCTTCCGAGGGAGAGAAACTCAGTGTCAGTTAGTTTT 738
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 742 ATTCTTGAAACAATTGTGAGTCTTCTTCCGAGGGAGAGAAACTCAGTGTCAGTTAGCTTT 801
Query 739 CTTTCGATACTTTTAAGAGCTGCGATATACCTCGAAACCACGGTAGCTTGCAGGCTTGAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CTTTCGATACTTTTAAGAGCTGCGATATACCTCGAAACCACGGTAGCTTGCAGGCTTGAT 861
Query 799 TTGGAGAAGAGAATGGGATTGCAATTAAGACAAGCTGTTATTGATGATCTCTTGATTCCT 858
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 862 TTGGAGAAGAGAATTGGATTGCAATTAAGACAAGCCGTGATTGATGATCTCTTGATTCCT 921
Query 859 TATTATTCATTCAATGGAGACAACACAATGTTAGATGTTGATACTGTTCAACGTATCCTC 918
| ||| ||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 922 TCTTACTCATTCAGTGGAGACAACACAATGTTTGATGTTGACACTGTTCAACGCATCCTC 981
Query 919 ATGAACTATCTTGAGTTTGAAGTTGAAGGAAACTCTGCTGATTTTGCTAGTGATATTGGT 978
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 982 ATGAACTATCTTGAGTTTGAAGTTGAAGGAAACTCTGCTGACTTTGCTAGTGATATTGGT 1041
Query 979 GAATTAATGGAGACTTATCTGGCTGAAATCGCTTCTGATAGAAACATAAACTTCGCGAAG 1038
||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1042 GAATTGATGGAGAGTTATCTGGCTGAAATCGCTTCTGATAAAAACATAAACTTGGCGAAG 1101
Query 1039 TTCATCGGTTTTGCTGAATGTATTCCGAAACA-------G-T-CT----A--GGATGTAT 1083
|||||| ||||||||||||| ||||| ||||| | | || | ||||||||
Sbjct 1102 TTCATCAGTTTTGCTGAATGCATTCCAAAACAGTCTCGGGTTACTGAAGATGGGATGTAT 1161
Query 1084 CGAGCCATTGACATCTTCCTCAAGACACATCCGAATATAAGTGAAGTGGAGAAGAAGAAA 1143
|||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1162 CGAGCCATAGACATCTACCTCAAGACACATCCGAATATAAGTGAAATGGAGAAGAAGAAA 1221
Query 1144 GTTTGTAGCTTAATGGACTGTAAAAAGCTATCGCGAGATGTGTATGCTCACGCAGCTCAA 1203
||||| ||||||||||||| | ||||| |||||||||| |||||||||||||||||||||
Sbjct 1222 GTTTGCAGCTTAATGGACTATCAAAAGATATCGCGAGAAGTGTATGCTCACGCAGCTCAA 1281
Query 1204 AACGATCGTTTCCAAGAAAATTTAAGCAATTCAGATTCTCCAGCACCAGCAACAGCAGAA 1263
|| |||||| ||| |||| ||||||| |||| |||||||||||| ||| ||| ||||||
Sbjct 1282 AATGATCGTCTCCCTGAAATTTTAAGCGATTCCGATTCTCCAGCAGCAGAAACCGCAGAA 1341
Query 1264 AAAACTCTTTCTCCTCCTGAGCTCAGCTCCTACAAGAATGAACTCTCCAAACTAAACCGG 1323
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 GAAACTATTCCTCCTCCTGAGCTCAGCTCCTACAAGAATGAACTCTCCAAACTAAACCGG 1401
Query 1324 GAAAACCAATACTTGAAGCTTGAGTTGCTCAAAGTGAAAATGAAGTTCAAGGAGTTGGAG 1383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1402 GAAAACCAATACTTGAAGCTTGAGTTGCTCAAAGTGAAAATGAAGTTCAAGGAGTTTGAG 1461
Query 1384 AAGGAGAAAGCTTTTGAAGTCATGAGTGGTTCGGATTGTTCTTCTTCGGTTTCAACTGCT 1443
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AAGGAGAAAGCTTATGAAGTCATGAGTGGTTCGGATTGTTCTTCTTCGGTTTCAACTGCT 1521
Query 1444 TCGGTGGCTAAGCCTCGATTACCTAGAAAGTCATTTATAAACTCTGTTTCTCAAAAACTC 1503
||||| | ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1522 TCGGTTGTTAAGCCTCGATTACCAAGAAAGTCATTTATAAGCTCTGTTTCTCAAAAACTC 1581
Query 1504 GGAAAGCTTATTAACCCTTTTGGCCTCAAACAAGGACAAACCAAACAACCTAAAAGCAGA 1563
|||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1582 GGAAAGCTTA--A-CCCTTTTGGCCTCAAACAAGGACAAACCAAACCACCTAAAAGCCGA 1638
Query 1564 AGACACTCTATATCTT 1579
||||||||||||||||
Sbjct 1639 AGACACTCTATATCTT 1654
Score = 859 bits (465), Expect = 0.0
Identities = 554/595 (93%), Gaps = 13/595 (2%)
Strand=Plus/Plus
Query 1 ATGTTGGAGAAACTTTCGTTTTTACTCCACAAGTTTCCACTTGTTTCAAAATGTGGGTTT 60
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 92 ATGTTGGAGAAAC-TTCGTTTTCACTCCACAAGTTTCCACTTGTTTCAAAATGTGGGTTT 150
Query 61 ATAAAGAAACTTGCTTCTGAATCAAGCAATGATTC---CA--A-CATTATCAGAATCCCA 114
||||||||||||||||| |||||||||| ||||| || | | |||||| ||||| |
Sbjct 151 ATAAAGAAACTTGCTTCCAAATCAAGCAACGATTCGAACATTACCGTTATCAAAATCCAA 210
Query 115 GATTTTCCTGGAGGTGCAGAAGG-ATTTGAGCTAGTC-ATCAAATTCTGCTACGACATAA 172
|||||||| |||||||||| ||| ||||||||||| | ||||| ||||||||||||||||
Sbjct 211 GATTTTCCCGGAGGTGCAG-AGGCATTTGAGCTAG-CAATCAAGTTCTGCTACGACATAA 268
Query 173 GCTTCGAGATAAACACAGAGAACATTGCGATGCTAC-TATGTGCAGCAGAGTATCTAGAG 231
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 269 GCTTCGAGATAAACACAGAGAACATTGCGATGCTACGT-TGTGCAGCAGAGTATCTAGAG 327
Query 232 ATGACAGAGGAACACTCTGTTGAAAACCTAGTGGAGACAATAGAGGTTTACTTAAACGAA 291
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 328 ATGACAGAGGAACACTCTGTTGAAAACCTAGTGGAGACAATAGAGGTTTACCTAAACGAA 387
Query 292 GTGATCCTCAAGAGTTTATCAAAATCAGTTAAAGTTCTGCAAAAATCTCAAGATTTGTTG 351
||| |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 388 GTGGTCCTCAAGAGTTTATCGAAATCGGTTAAAGTTCTGCGAAAATCTCAAGATTTGTTG 447
Query 352 CCTATAGCCGAGAGAGTGAGACTCGTGGACCGGTGTATCGATTCAATCGCTTATGCAATA 411
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 448 CCTATAGCCGAGAGAGTGAGACTCGTGGACCGGTGTATCGATTCAATTGCTTATGGAGTT 507
Query 412 TGCCAGGAGAGCCAGAGCAATGAGGATATAGTTGACTGGTGGGCTGACGATTTAGCTGTT 471
|| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 508 TGTCAGGAGAGCCAGAGCAATGAGGACATAGTTGACTGGTGGGCTGAGGATTTAGCTGGT 567
Query 472 CTAAAGATTGATATGTTTCGACGTGTCTTGGTCGCGATGATCGCTAGAGGGTTTAAGAGA 531
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 568 CTAAGGATTGATATGTTTCGACGTGTCTTGGTCGCGATGATTGCTAGAGGGTTTAAGCGA 627
Query 532 TACTCACTTGGTCCAGTACTTAAACTCTATGCCGAAAAAGCTCTTAGAGGGTTGG 586
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 628 TACTCACTTGGTCCAGTACTTATGCTCTATGCCCAAAAAGCTCTTAGAGGGTTGG 682
> Ahg496860 jgi|Araly1|496860|fgenesh2_kg.8__2676__AT5G67385.1
Length=2022
Score = 207 bits (112), Expect = 1e-52
Identities = 342/447 (77%), Gaps = 39/447 (9%)
Strand=Plus/Plus
Query 1 ATGTTGGAGAAACTTTCGTTTTT-ACTCCACAAGTTTCCACTTGTT-TCAAAATGTGGGT 58
|||| |||||| | ||| ||||| ||| ||||||||||||| | || |||||||||||||
Sbjct 185 ATGTAGGAGAAGC-TTC-TTTTTCACTGCACAAGTTTCCAC-TCTTGTCAAAATGTGGGT 241
Query 59 TTATAAAGAAACTTGCT-TCTGAATCAAGC--A-A-T--GATTCCAACATTATCAGA-AT 110
|||| |||||||||| | || ||||||| | | | | ||||||| | |||||| | ||
Sbjct 242 TTATCAAGAAACTTG-TGTCGGAATCAAACAAAGATTCAGATTCCACCGTTATCA-ATAT 299
Query 111 CCCAGATTTTCCTGGAGG-TGCAGAAGGATTTGAGCTAGTCAT-C-AAATTCTGCTAC-G 166
||||| | || ||||| | | |||| ||| ||||||| | | | || ||||||||| |
Sbjct 300 AACAGATATCCCAGGAGGCT-CTGAAGCATTCGAGCTAG-C-TGCTAAGTTCTGCTACGG 356
Query 167 ACA-TAAGCTTCGAGATAAACACAGAGAACATTGCGATGCTACTATGTGCAGCAGAGTAT 225
| | ||| ||| || || | |||||||||||||| ||||| | ||||||||||||||||
Sbjct 357 A-ATTAA-CTTTGATATGAGTACAGAGAACATTGCCATGCTGCGATGTGCAGCAGAGTAT 414
Query 226 CTAGAGATGACAGAGGAACACTCTGTTGAAAACCTAGTGG-AGACAATAGAGGT-TTACT 283
|||||||||||||||||||||||||| ||||| || || | | | | || | |||||
Sbjct 415 CTAGAGATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTA-AGAGCCGAA-TCTTACT 472
Query 284 TAAACGAAGT-GATCCTCAAGAGTTTATCAAAATCAGTTAAA-GTTCT-GCAAAAATCTC 340
| | ||||| | || ||||||| ||||| | || | | | || || ||| |||||
Sbjct 473 TGGATGAAGTAGCTC-TCAAGAGCTTATCGAGTTC-GATCACTGT-CTTGCACAAATCAG 529
Query 341 AAGATTTGTTGCCTATAGCCGAGAGAGTGAGACTCGTG-GACCGGTGTATCGATTCAATC 399
| || |||||||| || || || ||||| | ||| ||| | ||| || |||||| ||||
Sbjct 530 AGGAATTGTTGCCCATTGCTGAAAGAGTAAAACTTGTGAG-CCGTTGCATCGATGCAATT 588
Query 400 GCTTATGCAA-TATGCCAGGAGAGCCA 425
|||||| | | || |||||||||||
Sbjct 589 GCTTATATGACT-TGTCAGGAGAGCCA 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5