BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49990.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485357 jgi|Araly1|485357|fgenesh2_kg.5__1349__AT3G49990.1 2429 0.0
Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 169 8e-41
Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 169 8e-41
> Ahg485357 jgi|Araly1|485357|fgenesh2_kg.5__1349__AT3G49990.1
Length=1673
Score = 2429 bits (1315), Expect = 0.0
Identities = 1574/1694 (93%), Gaps = 38/1694 (2%)
Strand=Plus/Plus
Query 85 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 60
Query 145 GATACGTCAGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 204
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATACGTCTGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 120
Query 205 GATCAAAACCCTGTTAACATCAATGGTTTCAT---Tgaagaagat---gaagaagaagaa 258
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 121 GATCAAAACCCTGTTAACATCAATGGTTTCATCGAAGAAGAAGATGAAGAAGAAGAAGAA 180
Query 259 gGAGACAGCTCACGGTTTGATGATGCTCCTGAAGAGATGGATTATGGTTACTCTAGTTTT 318
|||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||| |||
Sbjct 181 GGAGACAGTTCACGGTTTGAAGATGCTCCTGAAGAGTTGGATTATGATTACTCTAATTTC 240
Query 319 GGGGATTCGAGTAGT--T-CTTTACCTGCTCATGTGAGGAAGGAGATTTTAGAGTTAGGG 375
||||| ||||||| | | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGGGAGTCGAGTATTAATCCTTTACCTGCTCATGTGAGGAAGGAGATTTTGGAGTTAGGG 300
Query 376 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 360
Query 436 GGTTCTAATTTCTATGTGAATCCTAAGTATGAGGTTGCTCAGTTACCTCGTGATGTTAAG 495
|||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||
Sbjct 361 GGTTCTAATTTCTATGCGAATCCTAAGTTTGTTGTTGATCAGTTACCTCGTGATGTTAAG 420
Query 496 GCTTATGATGCGTCTCGTGTGAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 555
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTATGATGCGTCTCGTGTTAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 480
Query 556 AAGTTGATGTATAGTGTTGCGTCCAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 615
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGTTGATGTATAGTGTGGCGTCGAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 540
Query 616 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 600
Query 676 GATTTGGAAGAAGATTTTGTTGTTCAAGCTAATCTTACTCAAAAGGGTGAATCTTCTGGT 735
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 601 GATTTGGAAGAAGATTTTGTTATTCAAGCTAATCTTACTCAACAGGGTGAAACTTCTGGT 660
Query 736 GTGAGCAATGGAGAGCTCGAGTTTTCTGTAAGACGTGAGGTTAGAGAA-AGAGAAAGTGA 794
||||||||| | | |||||||||| || | |||||| || ||| |||||||||||
Sbjct 661 GTGAGCAAT-----G-TTGAGTTTTCTGAAATTCCTGAGGTAAG-GAATAGAGAAAGTGA 713
Query 795 TGAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 854
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TAAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 773
Query 855 CGAACTCAATGAATATGGAAGTGATAGTGACGGTGATGGTTACATAGCTGAAGATGGaga 914
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 774 CGAACTCAATGAATATGGAAGTGACAGTGACTGTGATGGTTACATAGCTGAAGAT----- 828
Query 915 agaagaagaagaagaagaCTTCATGGCTCAAGAAGTTCAGAATCTTATTCATGGGAAGGC 974
| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 829 -G--G-AGAAGAAGAAGACTTCATGGCTCAAGACGTTCAGAATCTTATTCATGAGAAGGC 884
Query 975 AAAAGATTATGAGCTTGAAGAAAAATATATGAACCCTGCGGATATACTGAAGAACAGTGA 1034
|||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 885 GAAAGATTATGAGCTTGAAGAAAAATATATGAACCTTGCAGATATATTGAAGAACAGTGA 944
Query 1035 CTCTGTCAGAGATAAAGAGGAAGTGGACACTGCTGCTCATGTTATCCGCCGAACTGTAGA 1094
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 945 CTCTGTTAAAGATAAAGAGGAAGTGGACACTGCTGCTCATATTATCCGCCGAACTGTAGA 1004
Query 1095 ATATGGTGAAAATTTTGATAACGGGAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1154
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1005 ATATGGTGAAAATTTTGATAACGGAAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1064
Query 1155 CAGCGATGAAAGCGAGAAGCATGATTGTGAAACCATAGTCTCAACATACTCGAATCTCGA 1214
||| || |||||||||||| |||||||||| || |||||||||||||||||||||| ||
Sbjct 1065 CAGTGACGAAAGCGAGAAGTATGATTGTGATACTATAGTCTCAACATACTCGAATCGGGA 1124
Query 1215 TAACCTCCCTGGTAAAATCCTTGCTGCAGAGTCAGCT-AGGCAGAAGAAGCTGAGTGAAA 1273
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 1125 TAACCTCCCTGGTAAAATCCTTGCTGCCGAGTCAG-TCAGGCAGAAGAAGCTGAGTGAAA 1183
Query 1274 CATTAGCTAACGCATTGAGTTCAAATGGAAGAATCATTAATCTCCAAGGGAGAGAGAGGA 1333
|| ||||||| |||||||||||||| || |||||||||| ||||||||||||||||| ||
Sbjct 1184 CAGTAGCTAAAGCATTGAGTTCAAACGGCAGAATCATTACTCTCCAAGGGAGAGAGAAGA 1243
Query 1334 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCTGAACAAACCGATGTCAAAGCGGAAATCC 1393
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1244 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCGGAACAAACCGATGTCAAATCGGAAATCC 1303
Query 1394 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCaagagtcgaaagaagagaagaaag 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCAAGAGTCGAAAGAAGAGAAGAAAG 1363
Query 1454 agcggaaaaatgctgtaaaagccgaaaagcgagaagcaagGATAATTAAGAAACAGACAA 1513
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1364 AGCGGAAAAATGCTGTAAAAACCGAAAAGCGAGAAGCAAGGATAATGAAGAAACAGACAT 1423
Query 1514 A-GATGCTGTATTGCGGTGAAACGCAGCGTGCTCA-AAGAGCTGTTGCTACCTCTGGTCC 1571
|| ||||||| | |||||||| |||||||| || |||||||||| ||||||||||
Sbjct 1424 CCGA-GCTGTATCGTTATGAAACGCTCCGTGCTCAGAA-AGCTGTTGCTTCCTCTGGTCC 1481
Query 1572 ATCGTCGAGACCTCTAAAATAATA-TGTTACTAAGGTAAAACAAAACAATTCTCAGACTG 1630
| ||||| || |||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1482 AAAGTCGAAACATCTATAATAATACTGTTACGAAGGTAAAACAAAACAATTCTCAGACTG 1541
Query 1631 TTTAAAACCAGTTTTTCCAGCCATTTCGTGTAATATTTGCTGT-TTGttttttctttttC 1689
|||||| ||||||||| || || || |||||||||||||||| || ||||||| ||| |
Sbjct 1542 TTTAAA-CCAGTTTTTGAAGTCACTTGGTGTAATATTTGCTGTGTTTTTTTTTCGTTT-C 1599
Query 1690 ATCAAGATTTGAAAATCTTGAATCTTGTTTT-GGATGTGGAC-TTTTGAATATTATTTAT 1747
|||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||
Sbjct 1600 ATCAAGATTTGAAAATCTTGAATCTTTTTTTTGGATGTGGACGTTTTGAATATTATTTAT 1659
Query 1748 TACTTTTACTAGTC 1761
||||||||||||||
Sbjct 1660 TACTTTTACTAGTC 1673
> Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312
Length=1965
Score = 169 bits (91), Expect = 8e-41
Identities = 118/131 (90%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 350 TGAGGAAGGAGATTTTAGAGTTAGGGTATCCTGATGATGGTTATAATTACTTGGAGCATT 409
|||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1043 TGAGGAAGGAGATTTTGGAGTTAGGATATCTTGATGACGGTTATAATTACTTGGAGCATT 1102
Query 410 TGAGAGAGATTAAGAATACTGGTGGTGGTTCTAATTTCTATGTGAATCCTAAGTATGAGG 469
||||||||||||||||| ||||||||||||||| |||||||| | || |||||| ||| |
Sbjct 1103 TGAGAGAGATTAAGAATCCTGGTGGTGGTTCTACTTTCTATGCGGATTCTAAGTTTGAAG 1162
Query 470 TTGCTCA-GTT 479
||| ||| |||
Sbjct 1163 TTGATCACGTT 1173
> Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405
Length=1836
Score = 169 bits (91), Expect = 8e-41
Identities = 118/131 (90%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 350 TGAGGAAGGAGATTTTAGAGTTAGGGTATCCTGATGATGGTTATAATTACTTGGAGCATT 409
|||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1043 TGAGGAAGGAGATTTTGGAGTTAGGATATCTTGATGACGGTTATAATTACTTGGAGCATT 1102
Query 410 TGAGAGAGATTAAGAATACTGGTGGTGGTTCTAATTTCTATGTGAATCCTAAGTATGAGG 469
||||||||||||||||| ||||||||||||||| |||||||| | || |||||| ||| |
Sbjct 1103 TGAGAGAGATTAAGAATCCTGGTGGTGGTTCTACTTTCTATGCGGATTCTAAGTTTGAAG 1162
Query 470 TTGCTCA-GTT 479
||| ||| |||
Sbjct 1163 TTGATCACGTT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66124665320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5