BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49990.1 Length=1762 Score E Sequences producing significant alignments: (Bits) Value Ahg485357 jgi|Araly1|485357|fgenesh2_kg.5__1349__AT3G49990.1 2429 0.0 Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 169 8e-41 Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 169 8e-41 > Ahg485357 jgi|Araly1|485357|fgenesh2_kg.5__1349__AT3G49990.1 Length=1673 Score = 2429 bits (1315), Expect = 0.0 Identities = 1574/1694 (93%), Gaps = 38/1694 (2%) Strand=Plus/Plus Query 85 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 60 Query 145 GATACGTCAGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 204 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATACGTCTGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 120 Query 205 GATCAAAACCCTGTTAACATCAATGGTTTCAT---Tgaagaagat---gaagaagaagaa 258 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 121 GATCAAAACCCTGTTAACATCAATGGTTTCATCGAAGAAGAAGATGAAGAAGAAGAAGAA 180 Query 259 gGAGACAGCTCACGGTTTGATGATGCTCCTGAAGAGATGGATTATGGTTACTCTAGTTTT 318 |||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||| ||| Sbjct 181 GGAGACAGTTCACGGTTTGAAGATGCTCCTGAAGAGTTGGATTATGATTACTCTAATTTC 240 Query 319 GGGGATTCGAGTAGT--T-CTTTACCTGCTCATGTGAGGAAGGAGATTTTAGAGTTAGGG 375 ||||| ||||||| | | ||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GGGGAGTCGAGTATTAATCCTTTACCTGCTCATGTGAGGAAGGAGATTTTGGAGTTAGGG 300 Query 376 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 360 Query 436 GGTTCTAATTTCTATGTGAATCCTAAGTATGAGGTTGCTCAGTTACCTCGTGATGTTAAG 495 |||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||| Sbjct 361 GGTTCTAATTTCTATGCGAATCCTAAGTTTGTTGTTGATCAGTTACCTCGTGATGTTAAG 420 Query 496 GCTTATGATGCGTCTCGTGTGAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 555 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCTTATGATGCGTCTCGTGTTAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 480 Query 556 AAGTTGATGTATAGTGTTGCGTCCAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 615 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 481 AAGTTGATGTATAGTGTGGCGTCGAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 540 Query 616 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 600 Query 676 GATTTGGAAGAAGATTTTGTTGTTCAAGCTAATCTTACTCAAAAGGGTGAATCTTCTGGT 735 ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 601 GATTTGGAAGAAGATTTTGTTATTCAAGCTAATCTTACTCAACAGGGTGAAACTTCTGGT 660 Query 736 GTGAGCAATGGAGAGCTCGAGTTTTCTGTAAGACGTGAGGTTAGAGAA-AGAGAAAGTGA 794 ||||||||| | | |||||||||| || | |||||| || ||| ||||||||||| Sbjct 661 GTGAGCAAT-----G-TTGAGTTTTCTGAAATTCCTGAGGTAAG-GAATAGAGAAAGTGA 713 Query 795 TGAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 854 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 TAAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 773 Query 855 CGAACTCAATGAATATGGAAGTGATAGTGACGGTGATGGTTACATAGCTGAAGATGGaga 914 |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 774 CGAACTCAATGAATATGGAAGTGACAGTGACTGTGATGGTTACATAGCTGAAGAT----- 828 Query 915 agaagaagaagaagaagaCTTCATGGCTCAAGAAGTTCAGAATCTTATTCATGGGAAGGC 974 | | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 829 -G--G-AGAAGAAGAAGACTTCATGGCTCAAGACGTTCAGAATCTTATTCATGAGAAGGC 884 Query 975 AAAAGATTATGAGCTTGAAGAAAAATATATGAACCCTGCGGATATACTGAAGAACAGTGA 1034 |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| Sbjct 885 GAAAGATTATGAGCTTGAAGAAAAATATATGAACCTTGCAGATATATTGAAGAACAGTGA 944 Query 1035 CTCTGTCAGAGATAAAGAGGAAGTGGACACTGCTGCTCATGTTATCCGCCGAACTGTAGA 1094 |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 945 CTCTGTTAAAGATAAAGAGGAAGTGGACACTGCTGCTCATATTATCCGCCGAACTGTAGA 1004 Query 1095 ATATGGTGAAAATTTTGATAACGGGAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1154 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1005 ATATGGTGAAAATTTTGATAACGGAAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1064 Query 1155 CAGCGATGAAAGCGAGAAGCATGATTGTGAAACCATAGTCTCAACATACTCGAATCTCGA 1214 ||| || |||||||||||| |||||||||| || |||||||||||||||||||||| || Sbjct 1065 CAGTGACGAAAGCGAGAAGTATGATTGTGATACTATAGTCTCAACATACTCGAATCGGGA 1124 Query 1215 TAACCTCCCTGGTAAAATCCTTGCTGCAGAGTCAGCT-AGGCAGAAGAAGCTGAGTGAAA 1273 ||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| Sbjct 1125 TAACCTCCCTGGTAAAATCCTTGCTGCCGAGTCAG-TCAGGCAGAAGAAGCTGAGTGAAA 1183 Query 1274 CATTAGCTAACGCATTGAGTTCAAATGGAAGAATCATTAATCTCCAAGGGAGAGAGAGGA 1333 || ||||||| |||||||||||||| || |||||||||| ||||||||||||||||| || Sbjct 1184 CAGTAGCTAAAGCATTGAGTTCAAACGGCAGAATCATTACTCTCCAAGGGAGAGAGAAGA 1243 Query 1334 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCTGAACAAACCGATGTCAAAGCGGAAATCC 1393 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1244 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCGGAACAAACCGATGTCAAATCGGAAATCC 1303 Query 1394 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCaagagtcgaaagaagagaagaaag 1453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCAAGAGTCGAAAGAAGAGAAGAAAG 1363 Query 1454 agcggaaaaatgctgtaaaagccgaaaagcgagaagcaagGATAATTAAGAAACAGACAA 1513 |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1364 AGCGGAAAAATGCTGTAAAAACCGAAAAGCGAGAAGCAAGGATAATGAAGAAACAGACAT 1423 Query 1514 A-GATGCTGTATTGCGGTGAAACGCAGCGTGCTCA-AAGAGCTGTTGCTACCTCTGGTCC 1571 || ||||||| | |||||||| |||||||| || |||||||||| |||||||||| Sbjct 1424 CCGA-GCTGTATCGTTATGAAACGCTCCGTGCTCAGAA-AGCTGTTGCTTCCTCTGGTCC 1481 Query 1572 ATCGTCGAGACCTCTAAAATAATA-TGTTACTAAGGTAAAACAAAACAATTCTCAGACTG 1630 | ||||| || |||| ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1482 AAAGTCGAAACATCTATAATAATACTGTTACGAAGGTAAAACAAAACAATTCTCAGACTG 1541 Query 1631 TTTAAAACCAGTTTTTCCAGCCATTTCGTGTAATATTTGCTGT-TTGttttttctttttC 1689 |||||| ||||||||| || || || |||||||||||||||| || ||||||| ||| | Sbjct 1542 TTTAAA-CCAGTTTTTGAAGTCACTTGGTGTAATATTTGCTGTGTTTTTTTTTCGTTT-C 1599 Query 1690 ATCAAGATTTGAAAATCTTGAATCTTGTTTT-GGATGTGGAC-TTTTGAATATTATTTAT 1747 |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| Sbjct 1600 ATCAAGATTTGAAAATCTTGAATCTTTTTTTTGGATGTGGACGTTTTGAATATTATTTAT 1659 Query 1748 TACTTTTACTAGTC 1761 |||||||||||||| Sbjct 1660 TACTTTTACTAGTC 1673 > Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 Length=1965 Score = 169 bits (91), Expect = 8e-41 Identities = 118/131 (90%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 350 TGAGGAAGGAGATTTTAGAGTTAGGGTATCCTGATGATGGTTATAATTACTTGGAGCATT 409 |||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||| Sbjct 1043 TGAGGAAGGAGATTTTGGAGTTAGGATATCTTGATGACGGTTATAATTACTTGGAGCATT 1102 Query 410 TGAGAGAGATTAAGAATACTGGTGGTGGTTCTAATTTCTATGTGAATCCTAAGTATGAGG 469 ||||||||||||||||| ||||||||||||||| |||||||| | || |||||| ||| | Sbjct 1103 TGAGAGAGATTAAGAATCCTGGTGGTGGTTCTACTTTCTATGCGGATTCTAAGTTTGAAG 1162 Query 470 TTGCTCA-GTT 479 ||| ||| ||| Sbjct 1163 TTGATCACGTT 1173 > Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 Length=1836 Score = 169 bits (91), Expect = 8e-41 Identities = 118/131 (90%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 350 TGAGGAAGGAGATTTTAGAGTTAGGGTATCCTGATGATGGTTATAATTACTTGGAGCATT 409 |||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||| Sbjct 1043 TGAGGAAGGAGATTTTGGAGTTAGGATATCTTGATGACGGTTATAATTACTTGGAGCATT 1102 Query 410 TGAGAGAGATTAAGAATACTGGTGGTGGTTCTAATTTCTATGTGAATCCTAAGTATGAGG 469 ||||||||||||||||| ||||||||||||||| |||||||| | || |||||| ||| | Sbjct 1103 TGAGAGAGATTAAGAATCCTGGTGGTGGTTCTACTTTCTATGCGGATTCTAAGTTTGAAG 1162 Query 470 TTGCTCA-GTT 479 ||| ||| ||| Sbjct 1163 TTGATCACGTT 1173 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66124665320 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5