BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50020.1 Length=291 Score E Sequences producing significant alignments: (Bits) Value Ahg323579 jgi|Araly1|323579|fgenesh1_pm.C_scaffold_5001123 411 2e-114 Ahg937834 jgi|Araly1|937834|scaffold_502025.1 405 8e-113 > Ahg323579 jgi|Araly1|323579|fgenesh1_pm.C_scaffold_5001123 Length=291 Score = 411 bits (222), Expect = 2e-114 Identities = 270/293 (92%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 1 ATGAATCGTAATTGTCCGCTCTATAGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT 60 |||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATCGTAGTTGTCCGATCTTTGGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT 60 Query 61 ACGTGCCAACCTCTATTTCCAGGAATTAAGGTGGATTGGCCAGAATTAA-ATGGAGTAAA 119 ||||||||||||||||||||||||| |||||||| ||||||||| ||| | ||||||| Sbjct 61 TCGTGCCAACCTCTATTTCCAGGAATGAAGGTGGAATGGCCAGAACTAACA-GGAGTAA- 118 Query 120 G-GGACTTGAAGCTAAGAGAATAATCGAACATGACAATCCAAAAGTGGTGGTTGTTATCA 178 | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 119 GTGGACTTGAAGCTAAGAGAAGAATCGAACATGACAATCCAAAAGTGGTGGCTGTTATCA 178 Query 179 TTCCCGATGATGTTGCTGTACTAGCCGTCAATTGTTGTAACCGTGTCATTGTCCGTGTTC 238 ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 179 TTCCCGATGATGTTGCTGTGGTAGCCATCAATTGTTGTAACCGTGTCATTCTCCGTGTTC 238 Query 239 CCGTCAACAACTGTCCCAATGGTCCTGTCAGTAATTTTCCTCACATCGGATGA 291 |||| |||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 239 CCGTTAACAACTGTCCCAATGGTCCTGTCCTTAATATTCCTCACGTCGGATGA 291 > Ahg937834 jgi|Araly1|937834|scaffold_502025.1 Length=334 Score = 405 bits (219), Expect = 8e-113 Identities = 269/293 (92%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 1 ATGAATCGTAATTGTCCGCTCTATAGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT 60 |||||||||| ||||||| ||||| | ||||||||||||| ||||||||||||||||||| Sbjct 21 ATGAATCGTAGTTGTCCGATCTATGGCCCTCCGTGTCAACTCTGCAGCTGTGCTGGCATT 80 Query 61 ACGTGCCAACCTCTATTTCCAGGAATTAAGGTGGATTGGCCAGAATTAA-ATGGAGTAAA 119 ||||||||||||||||||||||||| |||||||| ||||||||| ||| | ||||| || Sbjct 81 TCGTGCCAACCTCTATTTCCAGGAATGAAGGTGGAATGGCCAGAACTAACA-GGAGT-AA 138 Query 120 G-GGACTTGAAGCTAAGAGAATAATCGAACATGACAATCCAAAAGTGGTGGTTGTTATCA 178 | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 139 GTGGACTTGAAGCTAAGAGAAGAATCGAACATGACAATCCAAAAGTGGTGGCTGTTATCA 198 Query 179 TTCCCGATGATGTTGCTGTACTAGCCGTCAATTGTTGTAACCGTGTCATTGTCCGTGTTC 238 ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 199 TTCCCGATGATGTTGCTGTGGTAGCCATCAATTGTTGTAACCGTGTCATTCTCCGTGTTC 258 Query 239 CCGTCAACAACTGTCCCAATGGTCCTGTCAGTAATTTTCCTCACATCGGATGA 291 |||| |||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 259 CCGTTAACAACTGTCCCAATGGTCCTGTCCTTAATATTCCTCACGTCGGATGA 311 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10187542263 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5