BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50020.1
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323579 jgi|Araly1|323579|fgenesh1_pm.C_scaffold_5001123 411 2e-114
Ahg937834 jgi|Araly1|937834|scaffold_502025.1 405 8e-113
> Ahg323579 jgi|Araly1|323579|fgenesh1_pm.C_scaffold_5001123
Length=291
Score = 411 bits (222), Expect = 2e-114
Identities = 270/293 (92%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 1 ATGAATCGTAATTGTCCGCTCTATAGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT 60
|||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCGTAGTTGTCCGATCTTTGGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT 60
Query 61 ACGTGCCAACCTCTATTTCCAGGAATTAAGGTGGATTGGCCAGAATTAA-ATGGAGTAAA 119
||||||||||||||||||||||||| |||||||| ||||||||| ||| | |||||||
Sbjct 61 TCGTGCCAACCTCTATTTCCAGGAATGAAGGTGGAATGGCCAGAACTAACA-GGAGTAA- 118
Query 120 G-GGACTTGAAGCTAAGAGAATAATCGAACATGACAATCCAAAAGTGGTGGTTGTTATCA 178
| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 119 GTGGACTTGAAGCTAAGAGAAGAATCGAACATGACAATCCAAAAGTGGTGGCTGTTATCA 178
Query 179 TTCCCGATGATGTTGCTGTACTAGCCGTCAATTGTTGTAACCGTGTCATTGTCCGTGTTC 238
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 179 TTCCCGATGATGTTGCTGTGGTAGCCATCAATTGTTGTAACCGTGTCATTCTCCGTGTTC 238
Query 239 CCGTCAACAACTGTCCCAATGGTCCTGTCAGTAATTTTCCTCACATCGGATGA 291
|||| |||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 239 CCGTTAACAACTGTCCCAATGGTCCTGTCCTTAATATTCCTCACGTCGGATGA 291
> Ahg937834 jgi|Araly1|937834|scaffold_502025.1
Length=334
Score = 405 bits (219), Expect = 8e-113
Identities = 269/293 (92%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 1 ATGAATCGTAATTGTCCGCTCTATAGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT 60
|||||||||| ||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 21 ATGAATCGTAGTTGTCCGATCTATGGCCCTCCGTGTCAACTCTGCAGCTGTGCTGGCATT 80
Query 61 ACGTGCCAACCTCTATTTCCAGGAATTAAGGTGGATTGGCCAGAATTAA-ATGGAGTAAA 119
||||||||||||||||||||||||| |||||||| ||||||||| ||| | ||||| ||
Sbjct 81 TCGTGCCAACCTCTATTTCCAGGAATGAAGGTGGAATGGCCAGAACTAACA-GGAGT-AA 138
Query 120 G-GGACTTGAAGCTAAGAGAATAATCGAACATGACAATCCAAAAGTGGTGGTTGTTATCA 178
| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 139 GTGGACTTGAAGCTAAGAGAAGAATCGAACATGACAATCCAAAAGTGGTGGCTGTTATCA 198
Query 179 TTCCCGATGATGTTGCTGTACTAGCCGTCAATTGTTGTAACCGTGTCATTGTCCGTGTTC 238
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 199 TTCCCGATGATGTTGCTGTGGTAGCCATCAATTGTTGTAACCGTGTCATTCTCCGTGTTC 258
Query 239 CCGTCAACAACTGTCCCAATGGTCCTGTCAGTAATTTTCCTCACATCGGATGA 291
|||| |||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 259 CCGTTAACAACTGTCCCAATGGTCCTGTCCTTAATATTCCTCACGTCGGATGA 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10187542263
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5