BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50040.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485362 jgi|Araly1|485362|fgenesh2_kg.5__1354__AT3G50040.1 1899 0.0
> Ahg485362 jgi|Araly1|485362|fgenesh2_kg.5__1354__AT3G50040.1
Length=1497
Score = 1899 bits (1028), Expect = 0.0
Identities = 1359/1512 (90%), Gaps = 49/1512 (3%)
Strand=Plus/Plus
Query 19 CTTTATGGCGCTTAAAGCAAAACCAAGATCTGAAATGGATATCTCAGATTGTTCTGCAAA 78
||||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 1 CTTTATGACGCTTAAAGCAAAGCCAAGATCTGAAATGGATATCTCTGGTTGTTCTGCAAA 60
Query 79 TCAACAACCAGATGGTGTTAATGTAGTGGAGGATGCACAAGAGGTGGAAGAGGATATAGT 138
||||||| |||||| |||||||| || ||| | ||||| | || | | | | |||
Sbjct 61 TCAACAATCAGATGATGTTAATGGAG-ATAGG-T-TTCAAGAAGAGG-A-CGTAGA-AGT 114
Query 139 TGATATCTTGAAGTGGCATG-ATGATTTTGAAGAGGAAAGAGAAGAGGTTTTGTGTGGAG 197
||||||| |||||| || || || | |||| || || |||||| ||||||| ||
Sbjct 115 TGATATCATGAAGT-GCGTGAATCAGATTGATGATGAGTTTCAAGAGGATTTGTGTCAAG 173
Query 198 ---CTTCTTCTTCAAGTTCTTTTGGTGATTCAATGTGTGCTCGTGATGGTGATGATTTTG 254
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 174 CTTCTTCTTCTTCGAGTTCTTTTGGTGATTCAATGTGTGCTCGTGATGGCGATGATTTTG 233
Query 255 GTTTTGGTGATGAAGCACAATCTATGTTAAG-CAATGATTATCCATTACCTGGAACTTGT 313
|||||||| ||||||||||||| |||||||| ||| ||||||||||| ||||||||||||
Sbjct 234 GTTTTGGTAATGAAGCACAATCAATGTTAAGTCAA-GATTATCCATTGCCTGGAACTTGT 292
Query 314 GATGATGGGACTGAGTTTTTGGGTTTGCCTAAGAAGAAGACGAATGATAGGTGGAGGAGA 373
||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||
Sbjct 293 GATGATGGGACTGAGTTTTTGGGTTTGACTAAGAAGAAGACTAATGATCGGTGGAGGAGA 352
Query 374 TTGACTAAGCCTATAATGTGGAGATGTAAGTGGATAGAGCTTAAGGTTAAGGAGATTCAG 433
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TTGACTAAGCCTTTAATGTGGAGATGTAAGTGGATAGAGCTTAAGGTTAAGGAGATTCAG 412
Query 434 TCTCAAGCTAGAGGGTATGAGAAAGAAGTTAAAGATTACTATTTGACTAAACAGTTTGAT 493
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCTCAAGCTAGAGCGTATGAGAAAGAAGTTAAAGATTACTATTTGACTAAACAGTTTGAT 472
Query 494 TTGGAGAAGTCGAAATTGGAAGGCTTTGATGGCAAATCGATTCCTTTTCGTGAAAACAA- 552
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 473 TTGGAGAAGTCGAAATTGGAAGGCTTTGATGGCAAATCGATTCCTTTTCGCGAAAA-AGC 531
Query 553 TCAAAGGAGGAATGTTTTTAAGAGAGGAAGAAGGAAACGAGTGGAAGAGACTACAGATGT 612
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 532 TCAAAGGATGAATGTTTTTAAGAGAGGAAGAAGGAAACGAGTGGAAGAGACAACAGATGT 591
Query 613 TGCTGCTTATATGTCTAACCATAACCTTTTCTCTTATGCTGATAAGCGGGTGCCGGTAAA 672
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 592 TGCTGCTTATATGTCTAACCATAATCTTTTCTCTTATGCTGAGAAGCGTGTGCCGGTAAA 651
Query 673 TGTTAAAGGGCAGTATCTTGATTCAGATTTTGGTACAGGTCGCAAAGCTACGGGGAAGCA 732
|||||||| ||||||||||||||| |||||||||||||| || ||||||||||| |||||
Sbjct 652 TGTTAAAGCGCAGTATCTTGATTCCGATTTTGGTACAGGCCGTAAAGCTACGGGCAAGCA 711
Query 733 AGATGCGA-TTGAAGATGATAGTCTAATTTCTGAGTTAGATTGTTCTGATGATGTACTTG 791
||||| || |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 712 AGATG-GAATTGAAGATGATAGTCTTATTTCTGAGTTAGATTGTTCTGATGATGTCCTTG 770
Query 792 CAAAGTTTCTGTGTAAGATTGATGAGGCACAGGGAAAAGCAAGAAGATTGAGGAAGCGTG 851
||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 771 CAAAGCTTCTGTGTGAGATTGATGAGGCACAGGGGAAAGCAAGAAGATTGAGGAAGCGTG 830
Query 852 TTGATCAGTTGATGTGGGATTCTCAGCCTGCTCATACATCATCAATGCCTCAAATGGTAG 911
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 831 TTGATCAGTTGATGTGGGATTCTCAGACTGCTCATACATCATCAATGCCTCAAACGGTAG 890
Query 912 CTCCCTGTCATAGAGACTCTATGATACAAACTGGCAAGAAATGTGCTCTTGTTGAAGCCC 971
||||||||||||||||||||| |||| ||| |||||| |||||||| ||| |||||| ||
Sbjct 891 CTCCCTGTCATAGAGACTCTACGATAAAAAATGGCAACAAATGTGCACTTATTGAAGACC 950
Query 972 CGTTGACTC--A----------------TGTACAAAATGGTCA-ACAATGTATACCTGCT 1012
||||| ||| | |||||||| |||| | ||||||||||||||||
Sbjct 951 CGTTGGCTCGTAGGCAGAGAGAGGCGAGTGTACAAATTGGT-AGACAATGTATACCTGCT 1009
Query 1013 GATCATATCGAACACCTAATGGTGCCTCAGACACATATTGGTGGGCAATGTTTGACTAAC 1072
|||| || |||||| ||| |||||||||||||||| |||| ||||||| |||||||||||
Sbjct 1010 GATCTTACCGAACATCTATTGGTGCCTCAGACACAAATTGCTGGGCAACGTTTGACTAAC 1069
Query 1073 AACTCTCCAATTTCATCTAG---CTTAAGATTTCACCCTATCCTTGAAGACCTGCTAATG 1129
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1070 AACTCTCCAATTTCATCTAAAAACTTAAGATTTCACCCTATCCTTGAAGACCTGCTAATG 1129
Query 1130 GATGAGCCAGAGATGAATGATCATGAAATGGAAGGGGATGACAAAAAGCTTGATTACTTC 1189
||||| |||||||||||||| |||||||||||| ||| ||| | |||||||||||||||
Sbjct 1130 GATGAAACAGAGATGAATGATGATGAAATGGAAGCGGACGACGAGAAGCTTGATTACTTC 1189
Query 1190 ATGAAGATAATCAATCAGATTACAGGCGTGCCACGGGAAGAAGCAGATGCAGAAGAAGAT 1249
| |||| |||||||| |||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1190 AGGAAGCTAATCAATGAGATTACAGGCGTGCCACCAGAAGAAGCTGATGCAGAAGAAGTT 1249
Query 1250 CCTACACCGGTCACCAAGAAGCGGAATACTTCTCACTGAAGCTCTCTCTCTGTACAGAGC 1309
||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1250 CCTACACCGGTCAGCAAGAAGCGGAAAACTTCTCACTGAAGCTCTCTCT--GTACAGAGC 1307
Query 1310 CTTATCTTCCTGCCTGATCAGCTAAAATTCATGTCCATAAAGCTCTCATAA-GATAGTAA 1368
|||||||||||||||||| ||| |||| ||||||||||||||||||| ||| ||||||||
Sbjct 1308 CTTATCTTCCTGCCTGATGAGCCAAAACTCATGTCCATAAAGCTCTC-TAAAGATAGTAA 1366
Query 1369 TATTGGTATATTCCGTTTATTCTTCTTC---TCTATCTCTCTACTAACTCTTTGGATTTG 1425
||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1367 AATTGGTATATTCCGTTTATTCTTCTCCCCCTCTCTCTCTCTACTAACTCTTTGGATTTG 1426
Query 1426 GCTCTTT-ATGAATTATGAAACCAGAATAGGTTTCAGAGTTTGTGCAGAGTTAAATGACT 1484
||||||| | ||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 1427 GCTCTTTGA-GAATTATGAGACCAGAATAGGTTTCAGAGTTTGTGCACAGTTATGTGACT 1485
Query 1485 TAGCACCATATC 1496
||| ||||||||
Sbjct 1486 TAGAACCATATC 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5