BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50050.1
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323582 jgi|Araly1|323582|fgenesh1_pm.C_scaffold_5001126 2850 0.0
Ahg939078 jgi|Araly1|939078|scaffold_503269.1 662 0.0
> Ahg323582 jgi|Araly1|323582|fgenesh1_pm.C_scaffold_5001126
Length=1902
Score = 2850 bits (1543), Expect = 0.0
Identities = 1790/1909 (94%), Gaps = 17/1909 (1%)
Strand=Plus/Plus
Query 95 ATGGCACTGCCGTCGATCTCATCAATCGGCGCGACGTTCTCACTCCTAATCTA--T-TTA 151
|||||||||||||||||||||||||||||||| || |||||| |||||||||| | ||
Sbjct 1 ATGGCACTGCCGTCGATCTCATCAATCGGCGCTACATTCTCAATCCTAATCTATTTCTTC 60
Query 152 TCTCTTCCTTATTCAATCACAGCTGGTGAAAACAACCTCCTCCACCAATCTCCAACCGCT 211
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 61 TCTCTTCCTTATTCAATCACAGCTGGTGAAAACAA---CCTCCACCATTCTCCCTCCGCT 117
Query 212 AGATCACGACGTCCCATGGTGTTCCCATTGTTCCTCTCTCAACCAAA---TTCTTCTTCG 268
|||||||||||||||||||| |||| |||||| | |||||||||||| |||||||||
Sbjct 118 AGATCACGACGTCCCATGGTCTTCCTATTGTTTCACTCTCAACCAAATTCTTCTTCTTCT 177
Query 269 AGATCCATATCAA-TCCCACATCGAAAACTCCACAAATCCGACTCAAAATCACTTCCTCA 327
|||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 AGATCCATCTCAATTCCC-CATCGAAAACTCCACAAATCCGACTCAAAATCACTGCCTCA 236
Query 328 CTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGGGTATTACACTACGAGGCTTTG 387
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 237 CTCTCGCATGAGACTCTACGACGATCTTCTTATTAACGGGTATTACACAACGAGGCTTTG 296
Query 388 GATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTA 447
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 GATTGGTACACCGCCACAAATGTTTGCTCTTATAGTTGATTCTGGAAGTACTGTTACTTA 356
Query 448 TGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGGACCCAAAATTTCAGCCAGA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGGACCCAAAATTTCAGCCAGA 416
Query 508 AATGTCTAGCACTTATCAACCTGTTAAGTGTAACATGGATTGTAATTGTGATGATGATAG 567
| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 417 ATTGTCTAGTACTTATCAACCTGTGAAGTGTAACATGGACTGTAATTGTGATGATGATA- 475
Query 568 AG-AACAATGTGTTTACGAGAGAGAGTATGCTGAACATAGTAGTAGTAAAGGTGTTCTTG 626
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 476 AGGAACAATGTGTTTACGAGAGAGAGTATGCGGAACATAGTAGTAGTAAAGGTGTGCTTG 535
Query 627 GAGAAGATCTTATTTCATTTGGCAATGAAAGCCAGCTAACACCTCAACGAGCTGTTTTCG 686
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 GAGAAGATCTTATATCATTTGGCAATGAAAGCCAGCTGACACCTCAACGAGCTGTTTTCG 595
Query 687 GTTGTGAAACTGTTGAAACCGGTGATCTTTATAGTCAACGTGCTGATGGGATTATTGGAT 746
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 596 GTTGTGAAACTGTTGAAACCGGTGATCTTTATAGTCAACGTGCTGATGGAATTATCGGAT 655
Query 747 TAGGTCAAGGAGATCTTAGTCTTGTTGATCAATTGGTGGATAAAGGTTTGATAAGCAACT 806
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 TAGGTCAAGGGGATCTTAGTCTTGTGGATCAATTGGTGGATAAAGGTTTGATAAGCAACT 715
Query 807 CTTTTGGTTTGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTT 866
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 CTTTTGGTTTGTGTTATGGAGGGATGGATGTTGGTGGAGGTTCGATGATTCTTGGCGGTT 775
Query 867 TTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGTCCATATTACA 926
|||||||||||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct 776 TTGATTATCCATCTGATATGATATTCACAGACTCGGACCCTGATCGTAGTCCATATTACA 835
Query 927 ATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCT 986
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 836 ATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAATTGTCGCTTAATTCGAGAGTCT 895
Query 987 TTGACGGGGAACATGGCGCCGTACTAGACAGTGGTACAACATATGCTTATCTTCCAGACG 1046
|||| ||||||||||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 896 TTGATGGGGAACATGGCGCCGTTTTAGATAGTGGTACAACATATGCTTATCTCCCTGACG 955
Query 1047 CAGCATTTGCGGCATTTGAGGAAGCTGTAATGAGAGAAGTTTCCACATTGAAGCAGATTG 1106
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 956 CAGCATTTGCAGCATTTGAGGAAGCTGTAATGAGAGAAGTTTCCCCATTGAAGCAGATTG 1015
Query 1107 ATGGTCCTGATCCAAATTTTAAAGATACTTGCTTCCAAGTCGCTGCAAGTAATTATGTCT 1166
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1016 ATGGTCCTGATCCAAATTTTAAAGATACTTGCTTCCTTGTCGCTGCAAGTAATGATGTCT 1075
Query 1167 CGGAACTTTCAAAGATATTCCCATCGGTCGAGATGGTATTTAAGAGTGGACAGTCATGGC 1226
| |||||||| |||||||||||||| ||||||||| ||||||||||||| || |||||||
Sbjct 1076 CCGAACTTTCGAAGATATTCCCATCAGTCGAGATGATATTTAAGAGTGGGCAATCATGGC 1135
Query 1227 TGTTGTCCCCTGAAAATTACATGTTTCGACATTCCAAGGTGCATGGTGCTTACTGTCTCG 1286
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1136 TGTTGTCCCCTGAAAATTACATGTTTCGACATTCCAAGGTGCATGGCGCATACTGTCTCG 1195
Query 1287 GTGTCTTCCCAAACGGAAAAGATCACACAACTCTTTTAGGAGGAATTGTGGTTCGTAATA 1346
|||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1196 GTGTTTTTCCAAATGGAAAAGATCATACAACTCTTTTAGGAGGAATTGTGGTTCGCAATA 1255
Query 1347 CACTTGTTGTGTATGATCGTGAGAATTCGAAGGTTGGATTCTGGAGAACCAATTGTTCGG 1406
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 1256 CACTTGTTGTGTATGATCGTGAGAATTCTAAGGTTGGATTCTGGAGAACTAACTGTTCAG 1315
Query 1407 AGTTATCGGATAGGCTTCATATTGATGGTGCACCACCACCTGCTACTTTGCCTTCAAATG 1466
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1316 AGTTATCGGATAGGCTTCATATTGATGGTGCACCACCACCTGCCACTTTGCCTTCAAATG 1375
Query 1467 ATTCAAATCCCTCCCACAATTCATCAAGCAATCTGTCA-GGTGTGACTCAAGTTGGTCAA 1525
|||||||||| |||| |||||||||||| || | || || | || |||| ||||||||
Sbjct 1376 ATTCAAATCCATCCCGCAATTCATCAAGTGATATC-CAAGGGGAGATTCAAATTGGTCAA 1434
Query 1526 ATAAACCTTGATATT-CAACTAACAGTCAACTCGTCCTATCTGAAACCTCGGATTGAAGA 1584
|||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1435 ATAAACCTTGAT-TTGCAACTAACAGTCAATTCGTCCTATCTGAAACCTCGCATTGAAGA 1493
Query 1585 TCTCTCCAAGATATTCTCCAAGGAGCTCGATGTCAAATCTTCACAGGTCAGTTTATCGAA 1644
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1494 GCTCTCCAAGATATTATCCAAGGAGCTTGATGTCAAATCTTCACAGGTCAGTTTATCGAA 1553
Query 1645 TCTCACCTCCAAAGGAAACGAGTCTCTCGTCAGAATGGTTGTCCTCCCACCTGAACCTTC 1704
|||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||
Sbjct 1554 TCTCACCTCCAAAGGAAACGAGTCTCTCATCAGAATGGTTGTTGTTCCTCCTGAACCTTC 1613
Query 1705 TACTTGGTTTTCAAATGTCACAGCAACGAATATAGTTTCTCGGTTTACAAATCATCAAAT 1764
|||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||
Sbjct 1614 TACTTGGTTTTCAAATGTCACAGCAAGGAATATAGTATCCCGGTTTACCAATCATCAAAT 1673
Query 1765 AAAGCTTCCTGAAATCTTCGGAAACTATCAGCTGGTTAATTACAAACTCGAGCCTCCAAG 1824
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CAAGCTTCCTGAAATCTTCGGAAACTATCAGCTGGTTAATTACAAACTCGAGCCTCCAAG 1733
Query 1825 AAAACGGACGAATAACAACATTGTCGTGATCGCGATTGGAATCATCGCTGTAATCGTCGG 1884
|||| ||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||
Sbjct 1734 AAAATGGACGAATAACAACATTACCGTGATCGCGATTGGGATCATCCCTGTAATTATCGG 1793
Query 1885 GTTATCAGCTTATGGAGCTTGGTTGATATGGAAACGGAAACAAACATCAATTCCATACAA 1944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 ATTATCAGCTTATGGAGCTTGGTTGATATGGAAACGGAAACAAACATCAATTCCATACAA 1853
Query 1945 GCCTGTTGATGAAGCTATAGTAGCTGAGCAAGAACTTCAACCTATATAA 1993
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1854 ACCTGTTGATGAAGCTATAGTAGCTGAGCAAGAACTGCAACCTATATAA 1902
> Ahg939078 jgi|Araly1|939078|scaffold_503269.1
Length=1134
Score = 662 bits (358), Expect = 0.0
Identities = 406/430 (94%), Gaps = 0/430 (0%)
Strand=Plus/Plus
Query 486 AGGACCCAAAATTTCAGCCAGAAATGTCTAGCACTTATCAACCTGTTAAGTGTAACATGG 545
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 503 AGGACCCAAAATTTCAGCCAGAATTGTCTAGCACTTATCAACCTGTGAAGTGTAACATGG 562
Query 546 ATTGTAATTGTGATGATGATAGAGAACAATGTGTTTACGAGAGAGAGTATGCTGAACATA 605
| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 563 ACTGTAATTGTGATGATGATAAAGAACAATGTGTTTATGAGAGAGAGTATGCGGAACATA 622
Query 606 GTAGTAGTAAAGGTGTTCTTGGAGAAGATCTTATTTCATTTGGCAATGAAAGCCAGCTAA 665
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 623 GTAGTAGTAAAGGTGTGCTTGGAGAAGATCTTATTTCATTTGGCAATGAAAGCCACCTGA 682
Query 666 CACCTCAACGAGCTGTTTTCGGTTGTGAAACTGTTGAAACCGGTGATCTTTATAGTCAAC 725
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 683 CACCTCAACGAGCTGTTTTCGGTTGCAAAACTGTTGAAACCGGTGATCTTTATAGTCAAC 742
Query 726 GTGCTGATGGGATTATTGGATTAGGTCAAGGAGATCTTAGTCTTGTTGATCAATTGGTGG 785
|||||||||| |||||||||||||||||||| || ||||||||||| | ||| |||||||
Sbjct 743 GTGCTGATGGAATTATTGGATTAGGTCAAGGGGACCTTAGTCTTGTGGGTCAGTTGGTGG 802
Query 786 ATAAAGGTTTGATAAGCAACTCTTTTGGTTTGTGTTATGGAGGGATGGATGTTGGTGGTG 845
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 803 ATAAAGGTTTGATAAGCAACTCTTTTGGTTTGTGTTATGGAGGGTTGGATGTTGGTGGAG 862
Query 846 GTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACC 905
||||||||||| ||||||||||||||||||||||||||||| | || |||||||| ||||
Sbjct 863 GTTCGATGATTGTTGGCGGTTTTGATTATCCATCTGATATGATATTCACGGACTCAGACC 922
Query 906 CTGATCGTAG 915
||||||||||
Sbjct 923 CTGATCGTAG 932
Score = 658 bits (356), Expect = 0.0
Identities = 399/419 (95%), Gaps = 5/419 (1%)
Strand=Plus/Plus
Query 71 TCGAAAAATCCAACCGGAGATCAAATGGCACTGCCGTCGATCTCATCAATCGGCGCGAC- 129
||| ||||| |||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 1 TCGGAAAATTCAACCGGAGATCAAATGGCATTGTCGTCGATCTCATCAATCGGCGCTACA 60
Query 130 GTTCTCACTCCTAATCTATTTATCTCTTCCTTATTCAATCACAGCTGGTGAAAACAACCT 189
| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 G-TCTCAATCCTAATCTATTTCTCTCTTCCTTATTCAATCACAGCTGGTGAAAACAA--- 116
Query 190 CCTCCACCAATCTCCAACCGCTAGATCACGACGTCCCATGGTGTTCCCATTGTTCCTCTC 249
||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 117 CCTCCACCAATCTCCCGCCGCTAGATCTCGACGTCCCATGGTGTTCCCATTGTTTCTCTC 176
Query 250 TCAACCAAATTCTTCTTCGAGATCCATATCAATCCCACATCGAAAACTCCACAAATCCGA 309
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 177 TCAACCAAATTCTTCTTCGAGATCCATCTCAATCCCACATCGAAAACTCCACAAATCCGA 236
Query 310 CTCAAAATCACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGGGTA 369
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 CTCAAAATCACTGCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAACGGGTA 296
Query 370 TTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTC 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTC 356
Query 430 TGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGG 488
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGGAAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGG 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80789409645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5