BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50060.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485364 jgi|Araly1|485364|fgenesh2_kg.5__1356__AT3G50060.1 1062 0.0
> Ahg485364 jgi|Araly1|485364|fgenesh2_kg.5__1356__AT3G50060.1
Length=978
Score = 1062 bits (575), Expect = 0.0
Identities = 785/876 (90%), Gaps = 56/876 (6%)
Strand=Plus/Plus
Query 41 AAAAGATCTGTTTCAATGGCGGATCGTGTTAAAGGTCCATGGAGTCAAGAAGAAGATGAG 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGATCTGTTTCAATGGCGGATCGTGTTAAAGGTCCATGGAGTCAAGAAGAAGATGAG 60
Query 101 CAGCTACGAAGGATGGTTGAGAAATACGGACCGAGGAATTGGTCTGCGATTAGCAAATCG 160
|||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 CAGCTACGTAGGATGGTGGAGAAATACGGTCCGAGGAATTGGTCGGCGATTAGCAAATCG 120
Query 161 ATTCCAGGTCGATCTGGTAAATCGTGTAGATTACGTTGGTGTAATCAGTTATCTCCGGAG 220
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ATTCCAGGTCGATCTGGTAAATCGTGTAGATTACGGTGGTGTAATCAGTTATCTCCGGAG 180
Query 221 GTTGAGCATCGTCCTTTCTCGCCGGAGGAAGATGAGACTATTGTAACCGCCCGTGCTCAG 280
|||||||| |||||||||||||||||||| ||||||||||||||||| || |||||| ||
Sbjct 181 GTTGAGCACCGTCCTTTCTCGCCGGAGGAGGATGAGACTATTGTAACGGCTCGTGCTAAG 240
Query 281 TTTGGTAACAAGTGGGCGACGATTGCTCGTCTTCTTAACGGTCGTACGGATAACGCCGTT 340
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTTGGTAACAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGATAACGCCGTT 300
Query 341 AAAAATCACTGGAACTCTACGCTTAAGAGGAAATGCAGCGGAGGTGTGGCGGT--T-ACG 397
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 301 AAAAATCACTGGAACTCGACGCTTAAGAGGAAATGCAGCGGAGGTGTGGCGGCGGTGACG 360
Query 398 ---ACG--G-TGACGGAGACGGAGGAAGATCAGGATCGGCCGAAGAAGAGGAGATCTGTT 451
||| | |||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 361 GCGACGACGGTGACGGAGACGGAGGAGGAGGAGTATCGGCCGAAGAAGAGGAGATCTGTG 420
Query 452 AGCTTTGATTCTGCTTTTGCTCCGGTGGATACTGGATTGTACATGAGTCCTGAGAGTCCT 511
|||||||||||||||||||||||||| | | || || |||| || ||||
Sbjct 421 AGCTTTGATTCTGCTTTTGCTCCGGT-----C-G-AT---AC-TGAG-----AG--TCCT 462
Query 512 AACGGAATCGATGTTAGTGATTCTAGCACGATTCCGTCACCGTCGTCTCCTGTTGCTCAG 571
|||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 463 AACGGATTCGATGTTAGTGATTCAAGCACGGTTCCGTCTCCGTCGTCTCCTGTTGCTCAG 522
Query 572 CTGTTTAAACCAATGCCGATTTCCGGCGGTTTTACGGTGGTTCCGCAGCCGTTACCGGTT 631
|| |||||||||||||||||||||||||| | ||| |||||||||
Sbjct 523 CTTTTTAAACCAATGCCGATTTCCGGCGG------G------CCG------TTACCGGTT 564
Query 632 GAAATGTCTTCGTCTTCGGAGGATCC-ACCTACTTCGTTGAGTTTGTCACTACCTGGAGC 690
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 565 GAAATGTCTTCGTCTTCGGAGGATCCGACA-ACGTCGTTGAGTTTGTCACTACCTGGAGC 623
Query 691 TGAGAACACGAGTTCGAGCCATAACAATAACAACAACGCGTTGATGTTTCCGAGATTTGA 750
||||||||||||||||| | | | ||| ||||||||||||||||||||||||||||||||
Sbjct 624 TGAGAACACGAGTTCGAACTACATCAACAACAACAACGCGTTGATGTTTCCGAGATTTGA 683
Query 751 GAGTCAGATGAAGATTAATGTAGAGGAGAGAGGAG-A--AG--G-ACGTAGAGGTGAGTT 804
||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct 684 GAGTCAGATGAAGATTAATGTAGAGGAGAGAGGAGGAGGAGAAGGACGTAGAGGTGAGTT 743
Query 805 TATGACGGTGGTGCAGGAGATGATAAAAGCTGAAGTGAGGAGTTACATGGCGGAAATGCA 864
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 744 TATGACGGTGGTGCAAGAGATGATTAAAGCTGAAGTGAGGAGTTACATGGCGGAGATGCA 803
Query 865 GAAAACAAGTGGTGG---ATTCGTCGTCGGAGGTTT 897
|||||| |||||||| ||||||||||||||||||
Sbjct 804 GAAAACGAGTGGTGGTGGATTCGTCGTCGGAGGTTT 839
Score = 91.6 bits (49), Expect = 1e-17
Identities = 54/56 (96%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 1044 aaaacaaaaTGTACAGAGGAATTAAAATTTCTATGGAATAATCTTAAATCTCAAAT 1099
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 924 AAAA-AAAATGTACAGATGAATTAAAATTTCTATGGAATAATCTTAAATCTCAAAT 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5