BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50070.1
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937842 jgi|Araly1|937842|scaffold_502033.1 1803 0.0
Ahg951496 jgi|Araly1|951496|scaffold_803383.1 553 1e-156
> Ahg937842 jgi|Araly1|937842|scaffold_502033.1
Length=1132
Score = 1803 bits (976), Expect = 0.0
Identities = 1074/1121 (96%), Gaps = 7/1121 (1%)
Strand=Plus/Plus
Query 89 CTTCTTCTCGGAAGAGAAAAATCATGGCTTTAGAAGAGGAGGAAGAGAGTCAAAACGCAC 148
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 1 CTTCTTCTCGGAAGAGAAAGATCATGGCTTTAGAAGAAGAAGAAGAGAGTCAAAACGCAC 60
Query 149 CGTTTTGTGTTCTTGATGGTCTTTTCTGTGAGGAAGAGAGTGAGTTTCACGAAC---AAG 205
||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 61 CGTTTTGTGTTCTTGATGGTCTTTTCTGTGAGGAAGAGAGTGAGTTTGAGGAACAAGAAG 120
Query 206 TAGATTTGTGCGACGAGAGTGTTGAAAAGTTTCCTTTTTTAAATCTGGGTTTGTCTGATC 265
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 121 CAGATTTGTGCGACGAGAGTGTCAAAAAGTTTCCTTTTTTACATCTGGGTTTGTCTGATC 180
Query 266 ATGATATGTTGTGGGATGATGATGAGTTATCAACTTTGATTTCGAAACAAGAACCGTGTC 325
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 ATGATATGTTTTGGGATGATGATGAGTTATTAACTTTGATTTCGAAACAAGAACCGTGTC 240
Query 326 TTTATGACGAAATCTTAGATGATGAGTTTCTGGTTTTGTGTCGTGAAAAGGCTCTTGATT 385
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTTATGACGAACTCTTAGATGATGAGTTTCTGGTTCTGTGTCGTGAAAAGGCTCTTGATT 300
Query 386 GGATTTTTAAAGTGAAATCTCATTATGGGTTTAATTCATTGACGGCTCTTTTAGCTGTTA 445
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGATTTTCAAAGTGAAATCTCATTATGGGTTTAATTCATTGACGGCTCTTTTAGCTGTTA 360
Query 446 ATTACTTCGATAGGTTTATTACAAGCAGGAAGTTTCAGACAGATAAGCCATGGATGTCTC 505
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 ATTACTTCGATAGGTTTATTACAAGCATGAAGTTTCAGACAGATAAGCCATGGATGTCTC 420
Query 506 AGCTTACTGCTTTGGCTTGTCTGTCTTTAGCTGCTAAGGTTGAAGAGATCCGTGTTCCTT 565
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 421 AGCTTACTGCTTTGGCTTGTCTATCTTTAGCTGCTAAGGTTGAAGAGATCCGAGTTCCTT 480
Query 566 TTCTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAGA 625
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 TACTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAGGCTAAGACTATACAGA 540
Query 626 GAATGGAGCTTCTTGTTCTGTCTACTCTTGACTGGAGGATGCATCCTGTGACTCCAATCT 685
||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 541 GAATGGAGCTTCTTGTTTTGTCTACTCTTGAGTGGAAGATGCATCCTGTGACTGCAATCT 600
Query 686 CGTTTTTCGATCACATTATTCGACGATACAGCTTTAAATCTCATCATCAATTGGAGTTCT 745
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 CGTTTTTCGATCACATTATTCGACGATACAGCTTTAAATCTCATCAGCAATTGGAGTTCT 660
Query 746 TGAGTAGATGTGAATCTTTATTACTCTCCATTATTCCTGATTCGAGATTTCTGAGTTTTA 805
|||||||||||||||| || || ||||||||| ||||||||||||| |||||||| ||||
Sbjct 661 TGAGTAGATGTGAATCGTTGTTGCTCTCCATTGTTCCTGATTCGAGGTTTCTGAGGTTTA 720
Query 806 GTCCTTCTGTGTTAGCCACTGCAATAATGGTCTCTGTTATTAGAGATTTGAAGATGTGTG 865
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 721 GTCCTTCTGTGTTAGCCACTGCAATAATGGTCTCTGTCATTAGAGATTTCAAGATGTGTG 780
Query 866 ACGAAGCTGTAT-ACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTCGGAGAAGGTA 924
||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 ACGAAGCTG-ATTACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTCGGAGAAAGTA 839
Query 925 AATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATGATGAATTGG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATGATGAATTGG 899
Query 985 ATGCAACAACCCGCTAGTCCGATCGGTGTGTTTGATGCGTCATTCAGTTCTGATAGCTCG 1044
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 900 ATGCAACAACCAGCTAGTCCGATCGGGGTGTTTGATGCGTCATTCAGCTCTGATAGCTCG 959
Query 1045 AATGAGTCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTCTTCACCATCTTCAGAGCCT 1104
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 960 AATGAGTCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTATTCACCATCTTCGGAGCCT 1019
Query 1105 TTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGCTATCTTCAATAAACCGAATG 1164
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 TTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGTTATCTTCAATAAACCGAATG 1079
Query 1165 TTT-TTCGATGTGCTTAGTAGTAGTCCTCGCTAATAATGTC 1204
||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1080 TTTCTT-GATGTGCTTAGTAGTAGCCCTCGCTAATAATGTC 1119
> Ahg951496 jgi|Araly1|951496|scaffold_803383.1
Length=1147
Score = 553 bits (299), Expect = 1e-156
Identities = 702/887 (79%), Gaps = 66/887 (7%)
Strand=Plus/Plus
Query 334 GAAATCTTAGATGATGAGTTTCTGGTTT-TGTGTCGTGAAA-AGGCTCTT-GATTGGATT 390
||||||||||||| | |||| |||||| | ||| | ||| ||||| || |||||| ||
Sbjct 281 GAAATCTTAGATG--G-GTTTTTGGTTTCT-TGTAG-AAAAGAGGCT-TTAGATTGGGTT 334
Query 391 TTTAAAGTGAAATCTCATTATGGGTT-TAATTCATTGACGGCTCT-TTTAGCTGTTAATT 448
|||| || ||||||||||| ||||| | ||||||||||||| | || ||||| || |
Sbjct 335 TTTAGGGTTAAATCTCATTACGGGTTCT-CTTCATTGACGGCTATACTT-GCTGTGAACT 392
Query 449 ACTTCGATAGGTTTATTACAAGCAGGAAGTTTCAGACAGATAAGCCATGGATGTCTCAGC 508
|||||||||||||||| ||||| | ||| ||||||| ||||||||||||||||||||||
Sbjct 393 ACTTCGATAGGTTTATGACAAGTATAAAGCTTCAGACTGATAAGCCATGGATGTCTCAGC 452
Query 509 TTACT-GCTTTGGCTTGTCTGTCTTTAGCTGCTAAGGTTGAAGAGATCCGTGTTCCTTTT 567
|| | ||| |||||| | |||||||||||||||| ||||||||||| | ||||| ||
Sbjct 453 TT-GTAGCTGTGGCTTCTTTGTCTTTAGCTGCTAAAGTTGAAGAGATTCAAGTTCCATTA 511
Query 568 CTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAGAGA 627
||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 512 CTCCTAGACCTCCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAAAGA 571
Query 628 ATGGAGCTTCTTG-TTCTGTCTACTCTTGACTGGAGGATGCATCCTGTGACTCCAATCTC 686
||||||||| ||| |||| ||||||||| | ||||| ||||| |||||||||||||||||
Sbjct 572 ATGGAGCTT-TTGATTCTTTCTACTCTTCAATGGAGAATGCACCCTGTGACTCCAATCTC 630
Query 687 GTT-TTTCGATCACATTATTCGACGATACAGCTT-TAAATCTCATCATCAATTGGAGTTC 744
|| ||| ||||||||||| || |||| | || ||||| || || |||||||| |||
Sbjct 631 TTTCTTT-GATCACATTATCCGGCGATTTGG-TTCTAAATGGCACCAGCAATTGGACTTC 688
Query 745 TTGAGTA-GATGTGAA--TCTTTATTACTCTCCATTATTCCTGAT-TCGAGATTTCTGAG 800
|| || | | ||||| |||| | | |||| ||||| ||||| | ||| ||| ||||
Sbjct 689 TTTAGGAAG-TGTGAGCGTCTTC-TGA-TCTCTGTTATTGCTGATGT-GAGGTTTATGAG 744
Query 801 TTTTAGT-CC-TTCTGTGTTAGCCACTGCAATAATGGTCTCTGTTATTAGAG-ATTTGAA 857
|| | | || |||||| ||||| |||||||||||| ||| ||| || ||| | |||||
Sbjct 745 TT--ACTTCCCTTCTGTCTTAGCTACTGCAATAATGTTCTTTGTCATC-GAGGAATTGAA 801
Query 858 GATG-TGTGACGAAGCTGTATACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTC-G 915
| ||||| |||| || |||||||||||| | |||||||||||||||||| || | |
Sbjct 802 -ACCATGTGATGAAGTTGAATACCAATCTCAAATAATGACTCTACTCAAAGTTAAT-CAG 859
Query 916 GAGAAGGTAAATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATG 975
||||| |||||| |||||||||| || || | || |||| |||||||||||| ||| ||
Sbjct 860 GAGAAAGTAAATGAATGCTATGAACTATTGCTGGAGCACAATCCAAGCAAGAAGAGGGTG 919
Query 976 ATGAATTGGATGCAACAACCCG-CTAGTCCGA-TCGGTGTGTTTGATGCGTCATTCAGTT 1033
||||||| ||| | | | | | ||||| | | ||||| || || | | || |
Sbjct 920 ATGAATT---TGCTAGATCAGGAC-AGTCCAAGT-GGTGTCTTAGA--C-T--TTGA--- 966
Query 1034 CTGATAGCTCGAATGAG-TCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTCTTCA-C- 1090
| || ||||| ||| || || ||| ||| || || ||||||||||||| || ||| |
Sbjct 967 C-GACAGCTCAAAT-AGCTCCTGGAATGT--CT-CTACTGCTTCAGTGTCCTCATCATCT 1021
Query 1091 -CATCTTCAGAGCCTTTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGCTATCT 1149
||||| |||||||| |||||||||| || |||||||| ||||| || ||||| | ||
Sbjct 1022 TCATCTCCAGAGCCTCTGCTCAAGAGAAGGAGAGTGCAGGAGCAACAAATGAGATTGCCT 1081
Query 1150 TCAATAAACCGAATGTTTTTCGATGTGCTTAGTAGTAGTCCTCGCTA 1196
|||||||| || |||||| ||||||||||||||||| ||||||||
Sbjct 1082 TCAATAAATCGTATGTTTCTCGATGTGCTTAGTAGT---CCTCGCTA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5