BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50080.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485366 jgi|Araly1|485366|fgenesh2_kg.5__1358__AT3G50080.1 1947 0.0
> Ahg485366 jgi|Araly1|485366|fgenesh2_kg.5__1358__AT3G50080.1
Length=1652
Score = 1947 bits (1054), Expect = 0.0
Identities = 1332/1462 (91%), Gaps = 36/1462 (2%)
Strand=Plus/Plus
Query 284 AATCGTCACCGTTTATCACTTGACGCTAAATCTGAGATTCTCCCTTTCTTACCATGTATC 343
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 217 AATCGTCACCGTTTATCACTTGATGCTAAATCTGAGATTCTCCCTTTCTTGCCTTGTATC 276
Query 344 TTCAATCGATTCGATTCCGTAACAAAGCTCGCTCTTCGTTGTGATCGGAGATCTTTTAGC 403
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 277 TTCAATCGGTTCGATTCCGTAACAAAGCTCGCTCTTCGTTGTGATCGGAGGTCTTTTAGC 336
Query 404 TTAAGCGATGAAGCTTTATTCATAG-TCTCGATTCGTTGCTCGAATCTGATTCGAGTCAA 462
|| ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 337 TTGAGCGATGAAGCTTTAGTCAT-GATCTCGATTCGTTGCTCGAATCTGATTCGAGTCAA 395
Query 463 GCTTCGTGGTTGTCGAGAGATAACAGATCTAGGTATGGAATCGTTCGCTAGAAACTGTAA 522
||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
Sbjct 396 GCTTCGTGGTTGTCGCGAGATTACGGATCTAGGAATGGAATCGTTCGCTAGAAACTGTAG 455
Query 523 GAGCTTGAGGAAATTATCATGTGGCTCTTGTACTTTCGGTGCGAAGGGAATAAACGCGAT 582
|| ||||||||| |||| ||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 456 GAACTTGAGGAAGCTATCGTGTGGCTCTTGTAATTTCGGTGCAAAGGGATTAAACGCGAT 515
Query 583 GCTTGAGCATTGTAAGGTTCTTGAGGAGTTATCTCTGAAGAGAATCAGAGGACTTCATGA 642
|||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 516 GCTTGAGCATTGCAAGGTTCTTGAGGAGTTATCTGTGAAGAGAATCAGAGGAATTGATGA 575
Query 643 ATTGGCTGAGCCAATAAAGCTGAGTTTGTCTGCTTCACTTAGATCTG-TGTT-TTTGAAG 700
||||||||||||||| ||| |||||| |||| ||||||||||| | | | || |||||||
Sbjct 576 ATTGGCTGAGCCAATTAAGGTGAGTTCGTCTTCTTCACTTAGAAC-GAT-TTGTTTGAAG 633
Query 701 GAGCTTGTTAATGGTCAGGTGTTTGGATCTTTGGTTGCTACTAGAACTTTGAAGAAAGTT 760
||||||||||||||| |||| |||| ||||||||||||||| | ||||||||| ||| ||
Sbjct 634 GAGCTTGTTAATGGTGAGGTATTTGAATCTTTGGTTGCTACAACAACTTTGAAAAAACTT 693
Query 761 AAAATCATTCGTTGTTTAGGTAATTGGGATAGAGTTTTTGAAATGAATGGAAATGGGAAT 820
| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 694 AGAATCATTCGTTGTTTAGGTGATTGGGATAGAGTTCTTGAAATGAATGGAGATGGGAAT 753
Query 821 AGTTCTTTAACTGAGATTCGTCTAGAGAGGCTTCAAGTGACTGATATTGGACTGTTTGGT 880
|||||||| |||||||||| ||| |||||||||||||||| |||| ||||||| | ||||
Sbjct 754 AGTTCTTTGACTGAGATTCATCTGGAGAGGCTTCAAGTGAGTGATGTTGGACTCTCTGGT 813
Query 881 ATATCTAAATGTTCGAATTTAGAGACTTTGCATATAGTGAAAACTCCTGATTGCTCGAAT 940
|||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 814 ATATCTAAATGTTCAAATTTAGAGACTTTGCATATAGTGAAAACCCCTGAATGTTCGAAT 873
Query 941 TTAGGTTTAGCTAGTGTTGTTGAGAGATGTAAGTTACTGAGAAAGCTTCATATTGATGGT 1000
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATAGGTTTAGCTAGTGTTGTAGAGAGATGTAAGTTACTGAGAAAGCTTCATATTGATGGT 933
Query 1001 TGGAGGGTTAAGAGGATTGGTGATCAAGGTTTGATGTCTGTAGCTAAGCACTGTTTGAAT 1060
|||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||
Sbjct 934 TGGAGGATTAAGAGGATCGGTGATGAAGGTTTGATGTCTGTAGCTAAGCACTGCTTGAAT 993
Query 1061 TTGCAAGAGCTTGTACTTATCGGTGTTGATGCGACGTATATGAGCTTGTCTGCTATTGCT 1120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 994 TTGCAAGAGCTTGTACTTATCGGTGTTGATGCGACGTATATGAGCTTGTCAGCTATTGCT 1053
Query 1121 TCAAACTGTAAGAAGCTTGAACGGTTAGCTCTTTGTGGGAGTGGTACGATTGGGGATGCG 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1054 TCAAACTGTAAGAAGCTTGAACGGTTAGCTCTTTGTGGGAGTGGTACGATTGGGGACACG 1113
Query 1181 GAGATTGGTTGTATCGCGGAGAAATGTGTGACGTTGAGGAAATTCTGTATCAAGGGATGT 1240
||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct 1114 GAGATTGGTTGTATCGCTGAGAAATGTGTGGCGCTGAGGAAATTCTGTATCAAGGGATGT 1173
Query 1241 TTGATTTCAGATGTAGGGGTCCAGGCGTTGGCTTTAGGCTGTCCTAAGTTGGTGAAACTG 1300
||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1174 CTGATTTCAGATGTCGGGATCAAGGCGTTGGCTTTAGGCTGTCCTAAGCTGGTGAAACTG 1233
Query 1301 AAGGTGAAGAAATGTAGTTTGGTTACAGGTGAAGTTAGGGAATGGTTGCGTGAACGGAGG 1360
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1234 AAAGTGAAGAAATGTAGATTGGTTACAGGTGAAGTTAGGGAATGGCTGCGTGAACGGAGG 1293
Query 1361 ATGACATtggtggtgagtatggatgatgatgaaaccaatggtgtgggt-ttggtggatgg 1419
||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 1294 ATGACGTTGGTGGTGAGTATGGATGATGATGAAACCAGTGGTGTGGGTATTG-TGGATGG 1352
Query 1420 tggtgatCAGAGAGTTCTTGAGACGGTTGTTGAGGAGGAGGCTCCGCCAGTGATTGATGG 1479
||||||||||||||||||||||||||| | ||||||||| | | ||| |||| ||||||
Sbjct 1353 TGGTGATCAGAGAGTTCTTGAGACGGTAGCTGAGGAGGATCCGCTGCCGGTGACTGATGG 1412
Query 1480 TGATGGTGGTTTGGGAGTTGCAGGTGGTGGTAGGCTAGGGTTAGCTATCTTGAAGACAAA 1539
|||||||||| ||| |||||||||||||| || |||||||||||||||| ||||||||
Sbjct 1413 TGATGGTGGTGCGGGGGTTGCAGGTGGTGGGAGAATAGGGTTAGCTATCTTAAAGACAAA 1472
Query 1540 GTTAGGGTTACTTGCAGGAAGGAACTTGGTGGCTTGCACGTTGAGAAGATGGTCTCAAAG 1599
|||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 1473 GTTAGGGTTACTTGCAGGAAGGAACTTGGTTGCTTGTACGTTTAGGAGATGGTCTCAAAG 1532
Query 1600 TGAAGCTACTAGTTCCATTTGATTGCACttttttttttAAACAA-GGGTCTTTGACTCGT 1658
||||||||||||||||||||||||| | |||||| ||||||||| | |
Sbjct 1533 TGAAGCTACTAGTTCCATTTGATTG-A-----------AAACAAAGGGTCTTTG--T-G- 1576
Query 1659 TGTGCATTCAGAACAAAACCC-ACTTCTGTATTATTATTTCTTGTTTGTTTAT-TT--TA 1714
|||||||||||||| || |||||||||| |||||||||||||| | || || ||
Sbjct 1577 ----CATTCAGAACAAAAACCTACTTCTGTAT-ATTATTTCTTGTTTCCT-ATGTTGATA 1630
Query 1715 -TCTTCACAATTCATTTTCAAA 1735
|||||||||||||||||||||
Sbjct 1631 ATCTTCACAATTCATTTTCAAA 1652
Score = 353 bits (191), Expect = 2e-96
Identities = 207/215 (96%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 35 ATACTCAACCACACAACAATGGGCCAAGCTCCGTCGTCTCCGGCGGAACCAAACGTACGC 94
|||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1 ATACTCAACCACACAAAAATGGGCCAAGCTCCGTCGTCTCCGGCGGATTCAAGCGTACGC 60
Query 95 GATACTTCTTTATGTCTATGGTCACCGGAATTTCTCGATTGCGAATCGATTGGTTTCGAA 154
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATACTTATTTATGGCTCTGGTCACCGGAATTTCTCGATTGCGAATCGATTGGTTTCGAA 120
Query 155 GACGGAGATTACGATTTCACGGCAAATCTACCAGACGATTGCCTCGCTCATATCTTTCAA 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACGGAGATTACGATTTCACGGCAAATCTACCAGACGATTGCCTCGCTCATATCTTTCAA 180
Query 215 TTTCTCAGTGCCGGAGATCGGAAACGATGCTCTCT 249
|||||||| ||||||||||||||||||||||||||
Sbjct 181 TTTCTCAGCGCCGGAGATCGGAAACGATGCTCTCT 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5