BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50100.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130 1857 0.0
Ahg487347 jgi|Araly1|487347|fgenesh2_kg.6__481__AT5G05540.1 337 1e-91
Ahg940302 jgi|Araly1|940302|scaffold_600846.1 163 3e-39
> Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130
Length=1230
Score = 1857 bits (1005), Expect = 0.0
Identities = 1160/1235 (94%), Gaps = 10/1235 (1%)
Strand=Plus/Plus
Query 59 ATGGAGCTTAAACTAGCCACCGCCGAGAAACAAGTGCTTGACGAGTTGGTGAAGCTA-TT 117
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1 ATGGAGCTTAAACTAGCCACCGCCGAGAAACAAGTGCTTGAAGAGTTGGTGAAGCTACTT 60
Query 118 GCAGAGTCGAGATTTGCGTGGCGAAAATGGAAACTGGAAGGAATTTTTACATGTTTACGA 177
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 61 -CAGAGTCGAGATTTGCGTGGCGAAAATGGAAATTGGAAGGAATTTTTACATGTTCACGA 119
Query 178 CAAAAATGCTGATTCACCAAGTGATCCTTCGAGGCGTTCTCATGAAGATTTGGTTCAGTT 237
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CAAAAATGCCGAATCACCAAGTGACCCTTCGAGGCGTTCTCATGAAGATTTGGTTCAGTT 179
Query 238 TCTGACAACTTTTAAGAAGAAAGAAGATTTGCAACTTCTGAAATGTCACGCCAATCATCT 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 TCTGACAACTTTTAAGAAGAAAGAAGATTTGCAAGTTCTGAAATGTCACGCCAATCATCT 239
Query 298 TCTGATTGAAAATTTGAAGCAAGAATCCCAAGATGAAGACACTCCTGAGCAGATGCTAGT 357
||| ||||||| ||||||| |||||| ||||||||||||||||||||| || ||||||
Sbjct 240 TCTCCTTGAAAAGCTGAAGCAGGAATCCGAAGATGAAGACACTCCTGAGCGGAGGCTAGT 299
Query 358 TAGATTGA-CAGTTGAGCATCCGAGTTACTC-GTTAGACTATTCTTTCAAGCCATACTCA 415
| |||||| || |||||||||||| ||| || | |||||||||| ||||||||||||||
Sbjct 300 TCGATTGACCA-TTGAGCATCCGAATTATTCAG-TAGACTATTCATTCAAGCCATACTCT 357
Query 416 GAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGAAAAAGGTGATGGAATCAACTAAC 475
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 358 GAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGTCAAAGGTGATGCAATCAACTAAC 417
Query 476 ATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGA 477
Query 536 GTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAACAAA 595
||||| | |||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 478 GTTGGCGCTGTAGACCGTGATTTAAAGGTGATTCTTGATGAATTTGTGAAACCGGACAAA 537
Query 596 CCTGTTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCT 655
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CATATTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCT 597
Query 656 AGTCTCTCTGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACGGGTACGATT 715
| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 ACACTCTCTGTGGCAGATATACAGGAAACGTTGCAGCCCTTTCTTTCTACGGGTACGATT 657
Query 716 TTGGTTGGTCACAGTTTAAACAGAGATTTGGAAGTGTTAAAGATAGATCATCCTAAAGTA 775
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 658 TTGGTAGGTCACAGTTTGAACAGAGATTTGGAAGTGTTGAAGATAGATCATCCCAAAGTA 717
Query 776 ATCGATACCGCACTTGTATTCAAGTA-TCCGAATACACGAAAGCTCAGAAGACCTTCACT 834
||||| || ||||||||||||| ||| ||| |||||||||||||| ||||||||||||||
Sbjct 718 ATCGACACTGCACTTGTATTCAGGTATTCC-AATACACGAAAGCTTAGAAGACCTTCACT 776
Query 835 TAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGTGTTCCTCATGA 894
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 TAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGCGTTCCTCATGA 836
Query 895 TTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGT 954
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTGTGTACACGACGCAGAAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGT 896
Query 955 TGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCT 956
Query 1015 ACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGAGCAAGTTCTTTCTGGAAAGTT 1074
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 957 ACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTGGACCAAGTTCTCTCTGGAAAGTT 1016
Query 1075 TACACTTGATGTGAAGCAAGCAAAAACACAGGGACGTTACTATTGTGCATTTGCTCTTTT 1134
||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||
Sbjct 1017 TACACTTGATGTGAAGCAAGCGAAAACACAGGGACGGTACTATTGTGCATTTGTTGTTTT 1076
Query 1135 CCATAGTTCAGAAGACGCAGATCAAGCATTTGAACACATTGATGGAAT-CGAAATGACGG 1193
||||||||||||||||||||||||||||||| || | |||||||| | |||||||||
Sbjct 1077 TGGTAGTTCAGAAGACGCAGATCAAGCATTTGAAAACGTGGATGGAATTC-AAATGACGG 1135
Query 1194 ATTCATTGGGTTTGCCACAAAAAGTGGTCATCATTAAGCTGAGTTCAGGATCAAGAGCTA 1253
||||||| || |||| |||||||||||||||| |||||||||| || |||||||||||||
Sbjct 1136 ATTCATTAGGCTTGCTACAAAAAGTGGTCATCGTTAAGCTGAGATCGGGATCAAGAGCTA 1195
Query 1254 GTATATATGTCCGTAAAATGGTTCAAGATGAATGA 1288
|||||||||||||||||||||||||||||||||||
Sbjct 1196 GTATATATGTCCGTAAAATGGTTCAAGATGAATGA 1230
> Ahg487347 jgi|Araly1|487347|fgenesh2_kg.6__481__AT5G05540.1
Length=1534
Score = 337 bits (182), Expect = 1e-91
Identities = 558/732 (76%), Gaps = 56/732 (8%)
Strand=Plus/Plus
Query 486 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTG 545
||||||||||||||||||||||||||||||||| ||| | | | |||||||||| || |
Sbjct 545 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTCTCGTTAGAGTTGCTGCAG 604
Query 546 TAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAA-CAAACCTGTTGTT 604
| ||||||||||||||||||||||||||||| || ||||||||||| ||| || ||||||
Sbjct 605 TTGACCGTGATTTAAAGGTGATTCTTGACGAATTCGTGAAACCGAATCAA-CCAGTTGTT 663
Query 605 GACTATAGGACAGACATTACAGGGA-TTACTGCTGAAGATATCGAAAATGCTAGTCTCTC 663
||||||||||| ||||| || | |||||||| ||||| | ||||| |||| ||| ||
Sbjct 664 GACTATAGGACTTTTATTACTGG-ACTTACTGCTCAAGATCTTGAAAAGGCTACTCTATC 722
Query 664 TGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACG-GG-TACGATTTTGGTT 721
||||||||||||||||||| |||| | ||||| || | | || ||| ||||||||
Sbjct 723 CGTGGTAGATATACAGGAAAAATTGCTGATGTTTCTCTC-A-GAGGATACAATTTTGGTA 780
Query 722 GGTCACAGTTTAAAC-AGAGAT-TTGGAAGTGTTAAAGATAGATCAT-CCTAAAGTAATC 778
||||| ||||| ||| | ||| || |||| || ||||| |||||| || | ||||||
Sbjct 781 GGTCAAAGTTTGAACCAT-GATCTTA-AAGTATTGAAGATGGATCATGCC-AGAGTAATA 837
Query 779 GATACCGCACTTGTATTCAAGTATC-CGA--A---TACACGAAAGC-TC-A-GA---A-- 824
||||| ||||||| || |||||| | | | |||| ||| || | | || |
Sbjct 838 GATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTAAA 897
Query 825 -GACCTTCACTT-AA-CAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCC-GAAAGACC 880
||||||| || || || | | ||||||| ||| ||||| || ||||| | ||||||
Sbjct 898 AGACCTTCT-TTGAATCATC-TGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAA- 954
Query 881 GGTGTTCCTCATGATTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTT 940
|||||||| || ||||||| ||||| ||| |||||| |||||||||| ||||||| |
Sbjct 955 GGTGTTCCCCACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATA 1014
Query 941 GTAGAGAAAAGAGTTGACACAACAAT-CAAACCATCTAAAGAGATGTTGGAGGTTGAGAA 999
||||||| |||| || || | | | | | |||||||||||||||||| | ||||||
Sbjct 1015 CTAGAGAATGGAGTAGAGACCTCCGTTCCA-CTATCTAAAGAGATGTTGGAAGCTGAGAA 1073
Query 1000 AG-CAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGA--GCA 1056
| |||| |||| || |||| ||||||| |||||| |||| ||||||| || | | |
Sbjct 1074 -GTCAAAGCTCTACCTCCATAGAATCCCTTGCAATGTCCCATATGAAGAG-TTAAATGGA 1131
Query 1057 AGTTCTTTCT-GGAAAGTTTAC-ACTTGATGTGAAGCAAG-C-AAAAACACAGGGA-CGT 1111
||| |||| || | | | | || ||| || |||| | | ||||| ||| | | |||
Sbjct 1132 -GTTGTTTCCAGGGA--TATCCCACATGAAGTTAAGCC-GTCGAAAAA-ACAAG-ATCGT 1185
Query 1112 TACTA-T-T-GTGCATTTGCTCTTTTCCATAGTTCAGAAGACGCAGATCAAGCATTTGAA 1168
|||| | | | ||| ||| | |||| | ||| ||||||| ||| ||||||||||||||
Sbjct 1186 CACTACTATAGCGCAATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAA 1245
Query 1169 CACATTGATGGA 1180
|||||| ||||
Sbjct 1246 AACATTGCTGGA 1257
> Ahg940302 jgi|Araly1|940302|scaffold_600846.1
Length=524
Score = 163 bits (88), Expect = 3e-39
Identities = 155/187 (83%), Gaps = 6/187 (3%)
Strand=Plus/Plus
Query 472 TAACATGGTAGCTG-TTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGT-TTA 529
||| ||||| |||| ||| ||||||||||||||||||||| ||||||| ||| | | ||
Sbjct 180 TAAGATGGTTGCTGTTTG-TTGTGAGATGGTTCTTTGTGATGATGGGAGTGAAGCTGTT- 237
Query 530 GTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCG 589
|| |||||| || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 GTCAGAGTTTCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGACGAATTTGTGAAACCG 297
Query 590 AACAAACCTGTTGT-TGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGA 648
|| ||||| ||| | |||||| || || || |||| ||| |||||||| ||||| | ||
Sbjct 298 AATAAACCAGTT-TCTGACTACAGAACCGATGTTACCGGGCTTACTGCTCAAGATCTTGA 356
Query 649 AAATGCT 655
|| ||||
Sbjct 357 AACTGCT 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5