BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50110.1
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485369 jgi|Araly1|485369|fgenesh2_kg.5__1361__AT3G50110.1 3234 0.0
> Ahg485369 jgi|Araly1|485369|fgenesh2_kg.5__1361__AT3G50110.1
Length=2130
Score = 3234 bits (1751), Expect = 0.0
Identities = 2022/2148 (94%), Gaps = 37/2148 (2%)
Strand=Plus/Plus
Query 1 ACGTTCATCGGAAATTTCGTACGCTGCTGCTCTGAATCAGAATCAGCTCCAATCTTCTTC 60
|||||||||||||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 1 ACGTTCATCGGAAATTTCGTACGCTGCTGCTCTGAATC--AA-C-G--CCAATCTTCTTC 54
Query 61 CTCCTCCATTGAATCTCTT-TTCGCTACG----GaaaaaaaCTCGAAGCTTATCGTCCTG 115
|| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 55 TTCATCCATTGAATCTCTTCTTCGCTACGAAAAAAAAAAAACTCGAAGCTAATCGTCCTG 114
Query 116 CATTCTCCGGTTTTCGTTTT-CTCGTAAAGTAAGGCTCATCGTTGTCTGAGCTAGCGTTG 174
||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 115 CATTCTCCGTTTTTC-TTTTGCTCGTAAAGTAAGGCTAATCGTTGTCTGAGCTAGCGTTG 173
Query 175 GATTGCTAAAATGGAAACTGATCCTGCTAACTCTTCATCGAAGTCTCCAGCTGTAGTATC 234
|||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||
Sbjct 174 GATTGCTAAAATGGAAACTGATCCTGCTGACTCTACATCTCAGTCTCCAGCTATAGTATC 233
Query 235 TGAGAAAGATGTATTGATTCCT-G-AACCTTCTGAAAATACTGTGGGCGTTGTACAAGAT 292
||||||||||||| |||||||| | || ||||||||||||| |||||||||||||||||
Sbjct 234 TGAGAAAGATGTAGTGATTCCTGGTAA--TTCTGAAAATACTATGGGCGTTGTACAAGAT 291
Query 293 CCTGTGAGCGCTGAAAGAGAAGCTCATGAAGACTCTATTAGTACAGAAGCTTCTGTTGCA 352
|| |||||| ||| ||||||||||||||||||| |||||||||||||||| |||||
Sbjct 292 CCCGTGAGCTCTGCGGGAGAAGCTCATGAAGACTCCGTTAGTACAGAAGCTTCAATTGCA 351
Query 353 AAGGTTGATGATACTCAAATGCCTGCTAGTTCTACCGGCTCTGAACCTTTAAGTAAAACA 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AAGGTTGATGATACTCAAATGCCTGCTAGTTCTACCGGCTCTGAACCTTTAAGTAAAACG 411
Query 413 GATGATATAGTTCCATGCCCACCAGGTTCCTCCCCACGCGAATCACCGCCGTCTATATTT 472
|||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||
Sbjct 412 GATGATATAGTTCCATGCCCGCCAGGTTCTTCTCCACGCGAATCACCGCCATCTATATTT 471
Query 473 TCTTCTTCTGGTCTTTCTTCTTGGGCCAAAAGTTTTAAATTCCAGCAGCAAGATCCAAAT 532
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 472 TCTTCTTCTGGTCTTTCTTCTTGGGCCAAGAGTTTTAAATTCCCGCAGCAAGATCCAAA- 530
Query 533 C-GTACAGATTCTGGGATGTCAGCTTTCACAAGATTCACCTCTGAACTTGGTCTGCATTT 591
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CGGTACAGATTCTGGGATGTCAGCTTTCACAAGATTCACCTCTGAACTTGGTCTGCATTT 590
Query 592 GCCAACGAAAGGGTCTGAGGAGGTTGGTGATTCTAGATCATCAAACACACAAGTTGGTGG 651
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 591 GCCATCGAAAGGGTCTGAGGAGGTTGGTGACCCTAGATCATCAAACACACAAGTTGGTGG 650
Query 652 TGCTTTTGAGTCCCTCACAAAAGCTGTGGTTGATTCATCTCGTGGTGCCGTTAAAGCAAT 711
||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 651 GGCTCTTGAGTCGCTCACAAAAGCTGTGGTTGATTCATCTCGTGGTGCCGTAAAAGCAAT 710
Query 712 GCAGGTGAAAGCACGCCACATTGTCTCTCAGAACAAAAGAAGATACCAGGAGGGGGAATT 771
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 711 GCAGGTGAAAGCACGCCACATTGTCTCTCAGAACAAAAGAAGATATCAGGAGGGGGAATT 770
Query 772 CGATTTGGACATGACATATATAACTGAGAATATAATCGCAATGGGGTTCCCAGCTGGTGA 831
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 771 CGATTTGGACATGACATATATAACTGAGAATATAATTGCAATGGGGTTCCCAGCTGGTGA 830
Query 832 CATAAGCTCTGGTCTTTTCGGATTTTTCGAGGGACTATATCGTAATCACATGGAAGAGGT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CATAAGCTCTGGTCTTTTCGGATTTTTCGAGGGACTATATCGTAATCACATGGAAGAGGT 890
Query 892 GATAAAGTTTTTTGAAACTCATCATAAGGATAAATATAAGGTCTACAACCTTTGTTCAGA 951
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 891 GATAAAGTTTTTTGAGACTCATCACAAGGACAAATATAAGGTCTACAACCTTTGTTCAGA 950
Query 952 GAGATTGTACGATGCTTCAAGATTTGAGGGGAAGGTTGCATCTTTCCCATTTGATGATCA 1011
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 951 GAGATTATACGATGCTTCAAGATTTGAGGGGAAGGTTGCGTCTTTCCCATTCGATGACCA 1010
Query 1012 TAATTGTCCTCCTATCCAATTGATACCATCGTTTTGTCAAAGTGCATACACATGGCTGAA 1071
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 1011 TAATTGTCCTCCTATCCAATTGATCCCATCGTTTTGTCAGAGTGCATACACATGGTTGAA 1070
Query 1072 GGAAGATATCCAAAATGTAGTGGTAGTTCATTGTAAAGCTGGAATGGCAAGAACCGGATT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGAAGATATCCAAAATGTAGTGGTAGTTCATTGTAAAGCTGGAATGGCAAGAACCGGATT 1130
Query 1132 AATGATTTGCTGTCTTCTTCTATATCTCAAGTTCTTTCCTACAGCTGAAGAGGCTATTGA 1191
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1131 AATGATTTGTTGTCTTCTTCTATATCTCAAGTTCTTTCCTACAGCTGAGGAGGCTATTGA 1190
Query 1192 TTACTATAACCAAAAGAGATGTCTTGATGGGAAAGCTCTTGTTCTCCCAAGTCAGATTCG 1251
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1191 TTACTATAACCAAAAGAGATGTCTTGATGGGAAAGCTCTCGTCCTACCAAGTCAGATTCG 1250
Query 1252 ATATGTCAAGTACTACGAACGTGTTCAAAACCAATTTGACGGGAAAGTTCCACCCGAGCG 1311
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1251 ATATGTCAAGTACTATGAACGTGTTCAAAATCAATTTGACGGGAAAGTTCCACCCGAACG 1310
Query 1312 AAGATGCATGCTCAGAGGATTTCGCCTAATCAACTGCCCTTACTGGATTAGACCTGCCAT 1371
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1311 AAGATGCATGCTCAGAGGGTTTCGCCTAATCAACTGCCCTTACTGGATTAGCCCTGCCAT 1370
Query 1372 TACGATCTCCAACCACACTGATATACTTTTCTCAACAAAGAAACATCAGAAAACCAAGGA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TACGATCTCCAACCACACTGATATACTTTTCTCAACAAAGAAACATCAGAAAACCAAGGA 1430
Query 1432 TTTGGGGCCTGAAGATTTTTGGATAAAGGCACCCAAAAAGGGAGTGGTTGTCTTTGCAAT 1491
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1431 TTTGGGGCCTGAAGATTTTTGGATAAAGGCACCCAAAAAAGGAGTTGTTGTCTTTGCAAT 1490
Query 1492 ACCTGGTGAAGCTGGTCTAACAGAATTAGCCGGCGACTTCAAAATCCACTTTCAAGATAG 1551
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 ACCTGGTGAAGCTGGTTTAACAGAATTAGCCGGCGACTTCAAAATCCACTTTCAAGATAG 1550
Query 1552 CGATGGAGATTTCTACTGTTGGCTAAATACTACACTGACTGATAACAGAACAATGCTGAA 1611
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1551 TGATGGAGATTTCTACTGTTGGCTAAATACTACACTGACTGATAACAGAACTATGCTGAA 1610
Query 1612 AGGCAGTGACTTTGATGGCTTTGACAAGAGAAAACTGCCTGCACCGGGTTTCCATGTCGA 1671
||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 1611 AGGTAGTGACTTTGATGGCTTTGAAAAGAGAAAATTGCCTGCACCGGGTTTTCATGTCGA 1670
Query 1672 GATCGTAATGATAGAACCCGACAATTCACAACCAACAAAGTCCAAATCTGATTCCACCCA 1731
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1671 GATTGTAATGATAGAACCCGACAATTCACAACCAACAAAATCCAAATCTGATTCCACCCA 1730
Query 1732 ACAACAATCTCAAAGCAGCTCCAGTGCTGATTCCAGCAAACTTAAGTCTAATGAGAAAGA 1791
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1731 ACAACAATCTCAAAGCAGCTCCAGTGCTGATTCCAGCAAACTCAAGTCTAATGAGAAAGA 1790
Query 1792 CGACGATGTATTCTCTGACAGTGATGGGGAAGAGGAAGGAAACTC--------TC-AGTC 1842
|| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1791 TGATGATGTATTCTCCGACAGTGATGGGGAAGAGGAAGGAAACTCAAAACCCATCGAGTC 1850
Query 1843 TTATTCAACTAACGAGAAAACCGCA-AGCTCAATGCACACAACTAGTAAACCTCATCAGA 1901
||||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 1851 TTATTCAACTACCGAGAAAACCTCAGA-CTCAATGCACATAACTAGTAAACCTCATCAGA 1909
Query 1902 TCAATGAGCCACCAAAGAGAGATGACCCTTCCGCAAACAGAAGTGTCACAAGTTCATCGT 1961
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 1910 TCAATGAGCCACCTAAGAGAGATGATCCTTCCGCAAACAGAAGTGTCACAAGTTC--C-T 1966
Query 1962 CCTCGGGTCATTATAATCCAATACCAAACAACTCATTAGCAGTTAGTGATATCAAAGCTA 2021
| |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 1967 C---GGGTCATTATAATCCAGTACCGAACGACTCATTAGCAGTTAGTGATATCAAAGCTA 2023
Query 2022 TTGCTGCAGATGCATCGGTCTTCTCCTTTGGAGATGAGGAAGAAGACTATGAAAGCGACT 2081
|||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 2024 TTGCTGCAGACGCATCCGTCTTCTCCTTTGGCGACGAGGAAGAAGACTATGAAAGCGACT 2083
Query 2082 GATCATGAAGACTCAGATTTTATCACACTTATCATACACACACAAGTA 2129
|| | |||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 2084 GAGCTTGAA-ACTCAGGTTTTATCACACTTATCATACACAAACAAGTA 2130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84750795125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5