BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50120.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1 2490 0.0
Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1 1140 0.0
Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866 1079 0.0
Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1 414 9e-115
Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137 353 2e-96
> Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1
Length=1687
Score = 2490 bits (1348), Expect = 0.0
Identities = 1578/1689 (93%), Gaps = 16/1689 (1%)
Strand=Plus/Plus
Query 1 ATTCACATATACTTCCTTCTCTC-T-C-ACTCCCTCATTTTCTTAAAAAAGCTTCAAGCA 57
|||||||||||||| |||||||| | | ||| ||||||||||| |||||||||||||||
Sbjct 1 ATTCACATATACTTACTTCTCTCTTCCTCCTCTCTCATTTTCTTGAAAAAGCTTCAAGCA 60
Query 58 ACaaaaaaaaTGGTGGCTGTCTTCTACAAAGACATGTTGAGCTGGTACTTACTCACCCTT 117
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 61 AC-AAAAAAATGGTGGCTGTCTTCTATAAAGACATGTTGAGTTGGTACTTACTCACCCTC 119
Query 118 AAGATCCGCGAAAAACTCGAAACACAAAACCAAGAATCCGTATTGGTTAATCAAGATCAA 177
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 120 AAGATCCGCGAAAAACTCGAAACCCAAAACCAAGAATCCGAATCGGTTAATCAAGATCAA 179
Query 178 AACCTCCCCGGTTTACCCGAAATCACCAGATCCGATCAAGATCAAAACATTCATAACAAC 237
||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||| |
Sbjct 180 AACCTCCCCAGTTTACCCGAAAT---CAGATCCGATCAAGACCAAAACAATCATAACCTC 236
Query 238 CAGCAAACTCA-ATCCGATCCCGCT---ATCTACGTAATCAAAGAGAGTCCAAAAGATTC 293
|||| ||| | ||| || |||| | || | || |||||||||||||||||||||||
Sbjct 237 GAGCAGACT-AGATCTGAGCCCGGTAAGATAGATGTGATCAAAGAGAGTCCAAAAGATTC 295
Query 294 ACGAGACGATTGGGTGATCTCGATCACAGACAAGCTCGAACAAGCACATAGAGATGATGA 353
||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 296 ACGAGACGATTGGGTGATCTCCATCACTGACAAGCTCGAACAAGCGCATAGAGACGATGA 355
Query 354 CACAACACTCTGGGGTAAGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAACGA 413
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CACGACACTCTGGGGAAAGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAACGA 415
Query 414 CAACAAATCGTATTTCCCTCAGACAGTCTCGCTTGGTCCGTACCATCATGGTAAGAAACG 473
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 416 CAACAAATCGTATTTCCCTCAGACCGTCTCGCTTGGTCCGTACCATCACGGTAAAAAACG 475
Query 474 GCTCCGGTCTATGGACCGTCACAAATGGCGTGCTGTCAATAGAGTCTTGAAACGTACGAA 533
||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 476 TCTCCGGTATATGGACCGTCACAAATGGCGTGCGGTCAGTAGAGTCTTGAAACGTACGAA 535
Query 534 CCAAGGCATTAAAATGTATATCGACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAGCTTG 593
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 536 CCAAGGCATTAAAATGTATATAGACGCCATGAGAGAGCTAGAGGAAAAGGCTAGAGCTTG 595
Query 594 TTACGAAGGTCCCTTAAGTTTGAGTAGTAACGAATTTATCGAAATGCTAGTTCTTGATGG 653
||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 596 TTACGAAGGTCCCTTAAGTTTGAACAGTAACGAATTTATAGAAATGCTTGTTCTTGATGG 655
Query 654 TTGTTTTGTGCTTGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACTGAACTCGGATATGC 713
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 656 TTGTTTTGTTCTTGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACGGAACTCGGATATGC 715
Query 714 ACGTAACGATCCAGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACGTGACATGGT 773
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 716 ACGTAACGATCCAGTTTTTGCGATGAGAGGATCAATGCATTCGATTCAACGTGACATGGT 775
Query 774 AATGCTTGAAAATCAACTTCCTTTATTTGTTCTAAACCGGTTATTAGAGTTACAGCTTGG 833
|||||| ||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||
Sbjct 776 AATGCTAGAAAATCAACTTCCTTTGTTTGTTTTAAACCGATTATTAGAGCTACAGCTTGG 835
Query 834 TACACGGAACCAAACCGGTTTGGTGGCACAATTAGCAATTCGGTTCTTTGATCCACTAAT 893
|||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 836 TACAAGGAACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTTGATCCACTAAT 895
Query 894 GCCAACGGACGAGCCGTTGACTAAATCTGGCCAGTCAAAACTCGAGAACTCACTGGCAAG 953
||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 896 GCCAACGGACGAGCCATTGACCAAATCTGGCCAGTCAAAACTCGAGAACTCGTTGGCAAG 955
Query 954 AGATAAATCCTTTGACCCATTCGCTGATATGGGTGAACTGCATTGTCTAGATGTTTTCCG 1013
||||||| |||||||||||||||| |||||||| ||| | ||||||||||||||||||||
Sbjct 956 AGATAAAGCCTTTGACCCATTCGCCGATATGGGAGAATTACATTGTCTAGATGTTTTCCG 1015
Query 1014 TCGTAGTTTGTTACGGTCTAGTCCTAAACCGGAGCCGAGGTTAACAAGAAAGAGATGGTC 1073
||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 TCGAAGTTTGCTCCGGTCTAGTCCTAAACCGGAGCCTAGGTTAACAAGAAAGAGATGGTC 1075
Query 1074 TC---GAAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGATACATTGTGTGACGGA 1130
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1076 TCCTCGAAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGATACATTGTGTGACTGA 1135
Query 1131 ACTAAAAGAGGCTGGTATAAAATTCAGAAGAAGGAAAACCGACCGGTTTTGGGATATGCA 1190
||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1136 ACTAAGAGAGGCCGGTATTAAATTCAGGAGAAGGAAAACCGACCGGTTTTGGGATATTCA 1195
Query 1191 ATTCAAAAACGGTTATCTAGAAATACCGAGGCTACTTATCCATGACGGTACCAAATCTCT 1250
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATTCAAAAACGGTTGTCTAGAAATACCGAGGCTACTTATCCATGACGGTACCAAATCTCT 1255
Query 1251 TTTTCTGAATCTTATAGCTTTTGAGCAGTGTCATATCGATTCGAGCAATGATATAACATC 1310
||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 1256 TTTCCTGAATCTTATAGCTTTTGAGCAGTGCCATATCGATTCCAGTAATGACATAACATC 1315
Query 1311 CTACATAATCTTCATGGACAATCTAATAGATTCTCACGAAGATGTTAGCTACTTACACTA 1370
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 CTACATAATCTTCATGGACAATCTAATAGATTCTCATGAAGATGTTAGCTACTTACACTA 1375
Query 1371 CTGTGGTATCATCGAACATTGGCTAGGGAGCGATTCTGAAGTCGCGGATTTGTTCAACCG 1430
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1376 TTGTGGTATCATCGAACATTGGCTAGGGAGCGATTCTGAAGTCGCAGATTTATTCAACCG 1435
Query 1431 TTTATGTCAAGAAGTTGTATTCGACACCGAAGATAGCTATTTATCTAGGTTATCGATTGA 1490
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1436 TTTATGTCAAGAAGTTGTATTCGACACCGAAGATAGCTATCTATCTCGGTTATCGATTGA 1495
Query 1491 GGTTAATCGTTACTACGATCATAAGTGGAATGCTTGGAGGGCTACGTTGAAACATAAGTA 1550
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1496 GGTTAACCGTTATTACGATCATAAGTGGAATGCTTGGAGGGCTACTTTGAAACATAAGTA 1555
Query 1551 CTTCAATAATCCATGGGCAATTGTTTCTTTCTGTGCTGCGGTTATTCTACTAGTCCTCAC 1610
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1556 CTTCAATAATCCATGGGCAATTGTTTCTTTCTGTGCTGCAGTTATTCTACTAGTCCTCAC 1615
Query 1611 TTTCTCTCAAAGTTTTTACGCTGTTTACGCTTATTATAAGCCACCTTCTTAACCTTATAA 1670
|||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1616 TTTCTCTCAAAGTTTTTACGCTGTATATGCTTATTATAAACCACCTTCTTAACCTTATAC 1675
Query 1671 -CTTGTTTT 1678
||||||||
Sbjct 1676 GCTTGTTTT 1684
> Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1
Length=1771
Score = 1140 bits (617), Expect = 0.0
Identities = 1296/1617 (80%), Gaps = 73/1617 (5%)
Strand=Plus/Plus
Query 83 ACAAAGACATGTTGAGC-TGGTACTTACTCACCCTTAAGATCCGCGAAAAACTCGAAA-C 140
||||||||||||| | | |||||||| |||| ||| ||| ||||| ||||| || ||| |
Sbjct 97 ACAAAGACATGTT-AACTTGGTACTTGCTCAGCCTCAAGCTCCGCCAAAAATTCCAAACC 155
Query 141 ACAAAACCAAGAATCCGTATTGGTTAATCAAGATCAAAACCTCCCCGGTTTACCCGAAAT 200
| |||||||| | || | | || | ||||||||| || |||| ||||||| |||| ||
Sbjct 156 A-AAAACCAACACTCGGAACCGG-T--TCAAGATCAGAATCTCCACGGTTTATCCGAGAT 211
Query 201 CACCAGATCCGATCAAGATCAAAACATTCATAACAACCAGCAAACTCAATCCGA-TCCCG 259
|| | | |||||| |||||| |||| ||| || | || ||||| ||||| | |||
Sbjct 212 -TCC-G----GTTCAAGACCAAAACTTTCAGAACCACAAACAGACTCATTCCGAGT-CCG 264
Query 260 CTATCTACGTAATCA-AAGAGAGTCCAAAAGAT-TCAC--GAGACG--A-TTGGGTGATC 312
|| | || | | ||||||| ||| |||| ||| |||| | | ||||||||||
Sbjct 265 GTAAGGAGGTGGT-AGAAGAGAGGCCAGGAGATACCACAGGAGAAGACAGTTGGGTGATC 323
Query 313 TCGATCACAGACAAGCTCGAACAAGCACATAGAGATGATGACACAACACTCTGGGGTAAG 372
|| || | ||||||| |||| |||||||||||||| || |||||| || | ||||| |||
Sbjct 324 TCAATAAGAGACAAGGTCGAGCAAGCACATAGAGACGACGACACAGCAATTTGGGGAAAG 383
Query 373 CTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAACGACAACAAATCGTATTTCCCT 432
||||| ||||||||||||||| ||||||| |||| |||||||| || ||||| ||||||
Sbjct 384 CTCTGCATCTACAGAGTTCCACATTACCTGAAAGAGAACGACAAGAAGTCGTACTTCCCT 443
Query 433 CAGACAGTCTCGCTTGGTCCGTACCATCATGGTAAGAAA-CGGCTCCGGTCTATGGACCG 491
||||| || ||||||||||||||||| |||||||| ||| || |||||| ||||||| ||
Sbjct 444 CAGACCGTTTCGCTTGGTCCGTACCACCATGGTAA-AAAGCGTCTCCGGCCTATGGAGCG 502
Query 492 TCACAAATGGCGTGCTGTCAAT-AGAGTCTTGAAACGTACGAACCAAG-GCATTA-AAAT 548
||||| ||||| || |||||| || ||| |||||||| || | || ||| || ||||
Sbjct 503 CCACAAGTGGCGCGCGGTCAATAAG-GTCCTGAAACGTTTAAAGC-AGCGCA-TAGAAAT 559
Query 549 GTATATC-GACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAGCTTGTTACGAAGGTCCC- 606
||||| | | |||||||||||||| || || |||||||| ||||| ||||||||||||
Sbjct 560 GTATA-CTAATGCCATGAGAGAGCTTGAAGAGAAGGCTCGTGCTTGCTACGAAGGTCCCA 618
Query 607 TTAAGTTTGAGTAGTAACGAATTTATC-GAAATGCTAGTTCTTGATGGTTGTTTTGTGCT 665
|| |||||||| ||||| || || | | |||||||| ||||||||||| |||||||| ||
Sbjct 619 TT-AGTTTGAGCAGTAATGAGTTCA-CTGAAATGCTTGTTCTTGATGGCTGTTTTGTTCT 676
Query 666 TGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACTGAACTCGGATATGCACGTAACGATCC 725
|||||||| || ||| | ||||||||||| || ||| | |||||||| || ||||||||
Sbjct 677 CGAGCTCTTCAGGGGAACTGTTGAAGGATTTACCGAAATAGGATATGCGCGCAACGATCC 736
Query 726 AGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACGTGACATGGTAATGCTTGAAAA 785
|||||||| ||| |||||| |||||||||||||||||| |||||| ||||||| |||||
Sbjct 737 GGTTTTCGCAATGCGAGGATTGATGCATTCGATTCAACGAGACATGATAATGCTGGAAAA 796
Query 786 TCAACTTCCTTTATTTGTTCTAAACCGGTTATTAGAGTTACAGCTTGGTACACGGAACCA 845
|||||||||| | || ||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 797 TCAACTTCCTCTGTTCGTTCTCGACCGGTTGCTAGAGTTACAGCTTGGTACACAGAACCA 856
Query 846 AACCGGTTTGGTGGCACAAT-TAGCAATTCGGTTCTTTGATCCACTAATGCCAAC-GGAC 903
||||||| | ||||||| || |||| || ||||||||| || ||||||||||| |||
Sbjct 857 AACCGGTATAGTGGCAC-ATGTAGCTGTTAAGTTCTTTGACCCGCTAATGCCAACGGGA- 914
Query 904 GAGCCGTTGACTAAATCTGG-CCAGTCAAAACTCGA-GAACTCACTGGCAAGAGATAAAT 961
||| |||| || ||| | || ||||||||| ||| | | | |||||| | || ||||
Sbjct 915 GAGGCGTTAACCAAA-CCGGACCAGTCAAAGCTC-ATG-A---ACTGGC-TG-GAAAAAT 966
Query 962 CCTTTGACCCA-TTCGCTGATATGGGTGAACTGCATTGTCTAGATGTTTTCCGTCGTAGT 1020
|||| ||| || || | ||| | ||| || |||| ||| | |||||||||||||| |||
Sbjct 967 CCTTGGACACACTT-GGTGACAAGGGCGAGTTGCACTGTTTGGATGTTTTCCGTCGAAGT 1025
Query 1021 -TTGTTACGGTCTAGTCCTAAACCGGAGCCGAGGTTAAC-AAGAAAGAGATGGTCTCGAA 1078
| || | |||||||||| |||| | | | | | | | |||||||| || |||
Sbjct 1026 CTACTT-CACTCTAGTCCTACACCGAATAC-AAGATCTCTACTAAAGAGATTAACTAGAA 1083
Query 1079 ACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGATACATTGTGTGACGGAACTAAAAG 1138
| ||||| |||| ||||||||| | |||||| || ||||||| ||||||||||||| |
Sbjct 1084 ATACGCGAGTGGTGGACAAGCGACAACAACAAATGGTACATTGCGTGACGGAACTAAGGG 1143
Query 1139 AGGCTGGTATAAAATTCA-GAAGAAGGAAAACCGACCGGTTTTGGGATA-TGCAATTCAA 1196
| |||||| | || |||| ||| |||||||||||||||||||||||||| || |||||||
Sbjct 1144 AAGCTGGTGTGAAGTTCAGGAA-AAGGAAAACCGACCGGTTTTGGGATATTG-AATTCAA 1201
Query 1197 AAACGGTTATCTAGAAATACCGAGGCTACTTATCCATGACGGTACCAAATCTCTTTTTCT 1256
||| ||||||||||||||||| | ||||| |||||||| ||||| || |||| | ||||
Sbjct 1202 AAATGGTTATCTAGAAATACCCAAACTACTAATCCATGATGGTACTAAGTCTC-TCTTCT 1260
Query 1257 -GAATCTTATAGCTTTTGAGCAGTGTCATATCGATTCGAGCAATGATATAACATCCTACA 1315
||||||||||||||||||||||||||||| || |||||||| | |||||||||||||
Sbjct 1261 CAAATCTTATAGCTTTTGAGCAGTGTCATATTGAGTCGAGCAACCACATAACATCCTACA 1320
Query 1316 TAATCTTCATGGACAATCTAATAGATTCT-CACGAAGATGTTAGCTACTTACACTACTGT 1374
|||| |||||||| ||||||||| | || | ||||||||||||||||| || || |||
Sbjct 1321 TAATTTTCATGGATAATCTAATAAACGCTTCT-GAAGATGTTAGCTACTTGCATTATTGT 1379
Query 1375 GGTATCATCGAACATTGGCTAGGGAGCGATTCTGAAGTCGCGGATTTGTTCAACCGTTTA 1434
||||||||||| |||||||| || || ||||||||||| ||||||||||||||||| ||
Sbjct 1380 GGTATCATCGAGCATTGGCTTGGTAGTGATTCTGAAGTTGCGGATTTGTTCAACCGGCTA 1439
Query 1435 TGTCAAGAAGTTGTATTCGACACCGAA-GATAG-CTATTTATCTAGGTTATC-GATTGAG 1491
||||||||||| || ||||| ||||| ||||| | || ||||| | | || | | ||
Sbjct 1440 TGTCAAGAAGTGGTTTTCGAT-CCGAAAGATAGTC-ATCTATCTCGACTGTCTGGT-GAT 1496
Query 1492 GTTAATCGTTACTACGATCATAAGTGGAATGCTTGGAGGGCTACGTTGAAACATAAGTAC 1551
|| || ||||| ||| ||| ||||||||||| || || |||||| |||| || ||||||
Sbjct 1497 GTAAACCGTTATTACAATCGTAAGTGGAATGTTTTGAAGGCTACCTTGACGCACAAGTAC 1556
Query 1552 TTCAATAATCCATGGGCA-ATTGTTTCTTTCTGTGCTGCGGTTATTCTACTAGTCCTCAC 1610
||||| ||||| |||||| ||| ||||||| | |||||| |||||| | ||| | |||||
Sbjct 1557 TTCAACAATCCTTGGGCATATT-TTTCTTTTTCTGCTGCAGTTATTTTGCTACTTCTCAC 1615
Query 1611 TTTCTCTCAAAGTTTTTACGCTGTTTACGCTTATTATAAGCCACCTTCTTAACCTTA 1667
|| | ||| ||||| |||||||| || ||||||||||||||| |||| ||| |||
Sbjct 1616 ATTATGTCAGAGTTTCTACGCTGTGTATGCTTATTATAAGCCAAATTCTAAACTTTA 1672
> Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866
Length=1695
Score = 1079 bits (584), Expect = 0.0
Identities = 1136/1395 (81%), Gaps = 67/1395 (5%)
Strand=Plus/Plus
Query 293 CACGA-GACGATTGGGTGATCTCGATCACAGACAAGCTCGAACAAGCACATAGAGATGAT 351
||||| || || ||||||||||| |||| ||||||| | || ||||| | |||||| ||
Sbjct 335 CACGAGGA-GAATGGGTGATCTCAATCAGAGACAAGATGGAGCAAGCGCTTAGAGAAGAC 393
Query 352 GACACAAC-ACTCTGGGGTAAGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAA 410
| |||||| | | |||| ||||| |||||||||||||||||| | ||||||||||| ||
Sbjct 394 GCCACAACTAGT-TGGGACAAGCTATGTATCTACAGAGTTCCACAATACCTTCAAGAGAA 452
Query 411 CGACAACAAATCGTATTTCCCTCAGACAGTCTCGCTTGGTCCGTACCATCATGGTAAGAA 470
| |||| || || |||||||||||||| ||||| |||||||||| || ||||| || ||
Sbjct 453 CAACAAGAAGTCCTATTTCCCTCAGACCGTCTCACTTGGTCCGTTTCACCATGGCAACAA 512
Query 471 ACGGCTCCGGTCTATGGACCGTCACAAATGGCGTGCTGTCAATA-GAGTCTTGAAACGTA 529
|| |||| | |||||||||||||| |||||||| ||||||| | ||| || |||||
Sbjct 513 ACATCTCCTACCCATGGACCGTCACAAGTGGCGTGCAGTCAATATG-GTCATGGCACGTA 571
Query 530 CGAACCAAGGCATTAAAATGTATATCGACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAG 589
| || || | |||| |||||||||| |||||||||| |||||| || || | |||||| |
Sbjct 572 CCAAACACGACATTGAAATGTATATTGACGCCATGAAAGAGCTTGAAGACAGGGCTCGTG 631
Query 590 CTTGTTACGAAGGTCCCTTA-AG-TTTGAGTAGTAACGAA-TT-TATCGAAATGCTAGTT 645
|||| ||||||||| || || || |||||| || ||| || || | | |||||| | |||
Sbjct 632 CTTGCTACGAAGGT-CC-TATAGATTTGAGCAGCAAC-AAGTTCTGT-GAAATGTTGGTT 687
Query 646 CTTGATGGTTGTTTTGTGCTTGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACTGAACTC 705
|||||||||||||| || || |||||||| |||||||| | |||||||||| | ||||||
Sbjct 688 CTTGATGGTTGTTTCGTTCTCGAGCTCTTCAGAGGAGCTGATGAAGGATTCTCGGAACTC 747
Query 706 GGATATGCA-CGTAACGATCCAGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACG 764
||||||| | |||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 748 GGATATG-ATCGTAACGATCCAGTTTTCGCAATGCGAGGATCAATGCATTCGATTCAACG 806
Query 765 TGACATGGTAATGCTTGAAAATCAACTTCCTTTATTTGTTCTAAACCGGTTATTAGAGTT 824
||||||||||||||| ||||||||||||||||| || ||||| ||||||||| ||||| |
Sbjct 807 TGACATGGTAATGCTAGAAAATCAACTTCCTTTGTTCGTTCTCAACCGGTTACTAGAGAT 866
Query 825 ACAGCTTGGTACA-CGGAACCAAACCGGTTTGGTGGCACAATTAGCAATTCGGTTCTTTG 883
|||||||||| || ||| ||||||||||||| ||||| ||||||||| | ||||||||||
Sbjct 867 ACAGCTTGGT-CAACGGCACCAAACCGGTTTAGTGGCGCAATTAGCAGTACGGTTCTTTG 925
Query 884 ATCCACTAATGCCAACGGACGAGCCGTTGACTAAATCTGGCCAGTCAAAACTCGAGAACT 943
||||||||||||| || || |||| |||||| | | ||| | ||| ||||
Sbjct 926 ATCCACTAATGCCTACCGATGAGCTGTTGAC-----C-----A---AAA-C-CGACAACT 970
Query 944 CACTGGCAAGA-GATAAATCCTTTGACCC-ATTCGCTGATATGG----GTGA-ACT-GCA 995
|| ||| || | ||||||| |||| |||| ||| || |||| || | || | | |||
Sbjct 971 CATTGGAAA-ATGATAAATTCTTTAACCCGATT-GCCGATAAGGACAAGGGAGAGTTGCA 1028
Query 996 TTGTCTAGATGTTTTCCGTCGTAGTTTG-TTACGGTCTAGTCCTAAACCGGAGCCGAGGT 1054
||||||||||||||||||||| | | | || ||| || || | ||||||||||||||||
Sbjct 1029 TTGTCTAGATGTTTTCCGTCGAAATCTACTT-CGGCCTTGTTCGAAACCGGAGCCGAGGT 1087
Query 1055 TAACAAGAAAGAGATGGTC-TCGAAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTG 1113
|| |||||| ||||||||| | |||| || ||||||||||| ||||||| |||||| ||
Sbjct 1088 TATCAAGAAGGAGATGGTCGTGGAAA-ACTCGTGTGGCGGATAAGCGCCAACAACAACTG 1146
Query 1114 ATACATTGTGTGACGGAACTAAAAGAGGCTGGTATAAAATTCAGAAGAAGGAAAACCGAC 1173
|||||||| ||||| ||||||| ||| |||||||| ||||||||||| ||||||||||||
Sbjct 1147 ATACATTGCGTGACCGAACTAAGAGAAGCTGGTATTAAATTCAGAAGGAGGAAAACCGAC 1206
Query 1174 CGGTTTTGGGATATGCAA-TTCAAAAACGGTTATCTAGAAATACCGAGGCTACTTATCCA 1232
|||||||||||||| | ||| ||||||||||||| || ||||| | ||||| |||||
Sbjct 1207 CGGTTTTGGGATATT-AGGTTCGAAAACGGTTATCTCGAGATACCTAAACTACTAATCCA 1265
Query 1233 TGACGGTACCAAATCTCTTTT-TCTGAATCTTATAGCTTTTGAGCAGTGTCATATCGATT 1291
|||||||||||||||||| || || ||||||||||||||| || ||||||||||| || |
Sbjct 1266 TGACGGTACCAAATCTCTCTTCTC-GAATCTTATAGCTTTCGAACAGTGTCATATTGACT 1324
Query 1292 CGAGCAATGATATAACATCCTACATAATCTTCATGGACAATCTAATAGATTCTC-ACGAA 1350
||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||| | |||
Sbjct 1325 CGAGCAACGATATAACATCATACATAATCTTTATGGATAATCTAATAGATTCTCCA-GAA 1383
Query 1351 GATGTTAGCTACTTACACTACTGTGGTATCATCGAACATTGGCTAGGGAGCGATTCTGAA 1410
|||||||| || || || || ||||||||||||||||||||| |||| | |||| ||||
Sbjct 1384 GATGTTAGTTATTTGCATTATTGTGGTATCATCGAACATTGGTTAGGAAATGATTATGAA 1443
Query 1411 GTCGCGGATTTGTTCAACCGTTTATGTCAAGAAGTTG-TATTCGACACCGAAGATAGCTA 1469
|| ||||||||||||||||| ||||||||||||| | | |||||| || || |||| ||
Sbjct 1444 GTTGCGGATTTGTTCAACCGGCTATGTCAAGAAGTGGCT-TTCGACCCCCAAAATAGTTA 1502
Query 1470 TTTATCT-AGGTTATCGATTGAGGTTAATCGTTACTACGATCAT-AAGTGGAATGCT-TG 1526
|||||| | | |||| | | ||| |||| | || | | |||||||||| | ||
Sbjct 1503 TTTATCGCAACTG-TCGAATAAAGTTGATCGGAATTAT-AGCCGCAAGTGGAATGTTCTG 1560
Query 1527 GAGG-GCTACGTTGAAACATAAGTACTTCAATAATCCATGGGCA-ATTGTTTCTTTCTGT 1584
||| | | | || ||||| ||||||||||||||||| |||||| ||| | ||||| | |
Sbjct 1561 AAGGCGAT-C-TTAAAACACAAGTACTTCAATAATCCTTGGGCATATT-TCTCTTTTTTT 1617
Query 1585 GCTGCGGTTATTCTACTAGTCCTCACTTTCTCTCAAAGTTTTTACGCTGTTTA-CGCTTA 1643
||||| || | || ||| | ||||| || | ||| ||||||| | ||| ||| | ||||
Sbjct 1618 GCTGCACTTGTCCTGCTATTTCTCACGTTATTTCAGAGTTTTTTCACTGCTTATC-CTTA 1676
Query 1644 TTATAAGCCACCTTC 1658
|| | | ||||||||
Sbjct 1677 TTTTTACCCACCTTC 1691
> Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1
Length=1463
Score = 414 bits (224), Expect = 9e-115
Identities = 541/686 (79%), Gaps = 53/686 (8%)
Strand=Plus/Plus
Query 484 ATGGACCGTCACAAATGGCGTGCTGTCAATA-GAGTCTTGAAACGTACGAACCAAGGCAT 542
|||||| ||||||||||||||| ||||||| | ||| |||||||||| || ||||||||
Sbjct 387 ATGGACTATCACAAATGGCGTGCGGTCAATATG-GTCATGAAACGTACCAAGCAAGGCAT 445
Query 543 TAAAATGTATATCGACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAGCTTGTTACGAAGG 602
| ||||||| |||||||||| |||||| || || | |||||| |||| ||| ||||
Sbjct 446 CGGATTGTATATTGACGCCATGAAAGAGCTCGAAGAGAGGGCTCGTTCTTGCTACAAAGG 505
Query 603 TCCCT-TAAGTTTGAGTAGTAACGAA-TTTATCGAAATGCTAGTTCTTGATGGTTGTTTT 660
| | | | ||||||| |||||| || || | | ||||||||||||||||||||||||||
Sbjct 506 T-CGTATTGGTTTGAGCAGTAAC-AAGTTCACCCAAATGCTAGTTCTTGATGGTTGTTTT 563
Query 661 GTGCTTGAGCTCTTTAGAGGAGCCGT-TGAAGGATTCACTGAA-CTCGGATATGCA--CG 716
|| || || ||||| ||||||||| | |||||||||| |||| || ||||| || ||
Sbjct 564 GTTCTCGATCTCTTCAGAGGAGCC-TATGAAGGATTCT-TGAAACTTGGATA--CAATCG 619
Query 717 TAACGATCCAGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACGTGACATGGTAAT 776
|||||||| ||||| || ||| ||||||||||||||||||||| |||||||||| ||||
Sbjct 620 AAACGATCCCGTTTTTGCCATGCGAGGATCGATGCATTCGATTCGACGTGACATGCTAAT 679
Query 777 GCTTGAAAATCAACTTCCTTTATTTGTTCT-AAACCGGTTATTAGAGTTACAGCTTGGTA 835
||| ||||||||||||||||| ||||| || |||||||||||||||| |||| || ||||
Sbjct 680 GCTGGAAAATCAACTTCCTTTGTTTGT-CTTAAACCGGTTATTAGAGCTACAACTCGGTA 738
Query 836 CACGGA-ACCAAACCGGTTTGGTGGCACAATTAGCAATTCGGTTCTTTGATCCACTAATG 894
||| | ||||||||||||| |||||||||||||| |||||||||| |||| | |||
Sbjct 739 CACA-ATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTCAATCCGTTGATG 797
Query 895 CCAACGGACGA-GCCGTTGACTAAATCTGGCCAGTCAAAACTCGAGAACTCACTGGCAAG 953
||||| | | ||| | | || | | | ||| | || ||||| | | ||
Sbjct 798 CCAACCTAT-ATGCCAT---C-AA--C---C-A---AAAT-T-GACAACTCGCAAGAAA- 840
Query 954 AGA-TAAATCCTTTGACCCA-TTCGCTGATATGG-GT-G-AAC--T-GCATTGTCTAGAT 1005
| | ||||| |||| ||||| || ||||| | || | | || | ||| ||||| |||
Sbjct 841 ACAATAAATTCTTTAACCCAATT-GCTGACAAGGAGAAGGAAGAGTTGCACTGTCTGGAT 899
Query 1006 GTTTTCCGTCGTAGTTTGTTACGGTCTAGTCCT-AAACCGGAGCCGAGGTTAACAAGAAA 1064
||||||||||| ||| || | | | |||||| | ||||||||||| |||||| | |||
Sbjct 900 GTTTTCCGTCGAAGTCTGCTCCAGCCTAGTC-TGAAACCGGAGCCAAGGTTATCGCGAA- 957
Query 1065 G-AGATGGTCTCG-AAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGA-TACATTG 1121
| ||||||||| | |||| ||| ||||||||||||||||| |||||| | | |||||||
Sbjct 958 GTAGATGGTCTAGGAAAC-CGCTTGTGGCGGACAAGCGCCAACAACAACT-ACTACATTG 1015
Query 1122 TGTGACGGAACTAAAAGAGGCTGGTA 1147
||||| ||||||| |||||| ||||
Sbjct 1016 CGTGACAGAACTAAGAGAGGCCGGTA 1041
> Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137
Length=1743
Score = 353 bits (191), Expect = 2e-96
Identities = 415/519 (80%), Gaps = 32/519 (6%)
Strand=Plus/Plus
Query 1165 AAAACCGACCGGTTTTGGGATATGCAATTCAAAAACGGTTATCTAGAAATACCGAGGCTA 1224
||||||||||||||||||||||| |||||| |||||||||||||| ||||| || |||
Sbjct 1234 AAAACCGACCGGTTTTGGGATATTAAATTCAGCAACGGTTATCTAGAGATACCCAGTCTA 1293
Query 1225 CTTATCCATGACGGTACCAAATCTCTTTTTC-TGAATCTTATAGCTTTTGAGCAGTGTCA 1283
||||||||||| ||||||||||||| | ||| ||||||| ||||||||||||||||||||
Sbjct 1294 CTTATCCATGATGGTACCAAATCTC-TCTTCTTGAATCTCATAGCTTTTGAGCAGTGTCA 1352
Query 1284 TATCGATTCGAGCAATGATATAACATCCTACATAATCTTCATGGACAATCTAATAGATTC 1343
| |||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1353 TCTCGAGTCGAGCAATGATATAACATCCTACATAATTTTTATGGACAATTTAATAGATTC 1412
Query 1344 TCAC-GAAGATGTTAGCTACTTACA-CTACTGTGGTATCATCGAACATTGGCTAGGGAGC 1401
|| | |||||| |||| || || || | || ||||||| || || || | ||||| ||
Sbjct 1413 TC-CTGAAGATATTAGTTATTTGCATC-ACCGTGGTATTATTGAGCACTCTCTAGGAAGT 1470
Query 1402 GATTCTGAAGTCGCGGATTTGTTCAACC-GTTTATGTCAAGAAGTTGTATTCGACACCGA 1460
|||||||||| |||||| ||||||||| ||| |||||| ||||| || ||||||||| |
Sbjct 1471 AATTCTGAAGTTGCGGATATGTTCAACCAGTT-ATGTCAGGAAGTGGTTTTCGACACCAA 1529
Query 1461 AGATAGCTATTTATCT-AGGTTATCGATTGAGGTTAATCGTTACTACGATCATAAGT--- 1516
||||| ||| |||| | || | || ||||||| |||||| ||| || || || |
Sbjct 1530 AGATATTTATCTATCCCAA-TTGTTGAGTGAGGTTCATCGTTGCTATGAACAAAACTACT 1588
Query 1517 ---GGAA-T-G----CTTGGAGGGCTACGTTGAAACATAAGTACTTCA-ATAATCCATGG 1566
|||| | | ||| || || || |||||||| |||||||| | |||| || |||
Sbjct 1589 CCAGGAAGTTGAATTCTTTGACAGCGACCTTGAAACACAAGTACTT-AGATAACCCTTGG 1647
Query 1567 GCA-ATTGTTTCTTTC-TGTGCTGCGGTTATTCTACTAGTCCTCACTTTCTCTCAAAGTT 1624
|| ||| | |||||| | ||| || |||||||| ||| | || || || ||||||||||
Sbjct 1648 GCGTATT-TGTCTTTCAT-TGCGGCAGTTATTCTTCTAATTCTTACATTATCTCAAAGTT 1705
Query 1625 -TTTACGCTGTTTACGCTTATTATAAGCCA-CCTTCTTA 1661
||| |||| ||| ||||||| ||| ||| ||| ||||
Sbjct 1706 ATTTT-GCTGCTTATGCTTATTTTAATCCATCCT-CTTA 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5