BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50120.1 Length=1819 Score E Sequences producing significant alignments: (Bits) Value Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1 2490 0.0 Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1 1140 0.0 Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866 1079 0.0 Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1 414 9e-115 Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137 353 2e-96 > Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1 Length=1687 Score = 2490 bits (1348), Expect = 0.0 Identities = 1578/1689 (93%), Gaps = 16/1689 (1%) Strand=Plus/Plus Query 1 ATTCACATATACTTCCTTCTCTC-T-C-ACTCCCTCATTTTCTTAAAAAAGCTTCAAGCA 57 |||||||||||||| |||||||| | | ||| ||||||||||| ||||||||||||||| Sbjct 1 ATTCACATATACTTACTTCTCTCTTCCTCCTCTCTCATTTTCTTGAAAAAGCTTCAAGCA 60 Query 58 ACaaaaaaaaTGGTGGCTGTCTTCTACAAAGACATGTTGAGCTGGTACTTACTCACCCTT 117 || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 61 AC-AAAAAAATGGTGGCTGTCTTCTATAAAGACATGTTGAGTTGGTACTTACTCACCCTC 119 Query 118 AAGATCCGCGAAAAACTCGAAACACAAAACCAAGAATCCGTATTGGTTAATCAAGATCAA 177 ||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| Sbjct 120 AAGATCCGCGAAAAACTCGAAACCCAAAACCAAGAATCCGAATCGGTTAATCAAGATCAA 179 Query 178 AACCTCCCCGGTTTACCCGAAATCACCAGATCCGATCAAGATCAAAACATTCATAACAAC 237 ||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||| | Sbjct 180 AACCTCCCCAGTTTACCCGAAAT---CAGATCCGATCAAGACCAAAACAATCATAACCTC 236 Query 238 CAGCAAACTCA-ATCCGATCCCGCT---ATCTACGTAATCAAAGAGAGTCCAAAAGATTC 293 |||| ||| | ||| || |||| | || | || ||||||||||||||||||||||| Sbjct 237 GAGCAGACT-AGATCTGAGCCCGGTAAGATAGATGTGATCAAAGAGAGTCCAAAAGATTC 295 Query 294 ACGAGACGATTGGGTGATCTCGATCACAGACAAGCTCGAACAAGCACATAGAGATGATGA 353 ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| Sbjct 296 ACGAGACGATTGGGTGATCTCCATCACTGACAAGCTCGAACAAGCGCATAGAGACGATGA 355 Query 354 CACAACACTCTGGGGTAAGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAACGA 413 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CACGACACTCTGGGGAAAGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAACGA 415 Query 414 CAACAAATCGTATTTCCCTCAGACAGTCTCGCTTGGTCCGTACCATCATGGTAAGAAACG 473 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 416 CAACAAATCGTATTTCCCTCAGACCGTCTCGCTTGGTCCGTACCATCACGGTAAAAAACG 475 Query 474 GCTCCGGTCTATGGACCGTCACAAATGGCGTGCTGTCAATAGAGTCTTGAAACGTACGAA 533 ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 476 TCTCCGGTATATGGACCGTCACAAATGGCGTGCGGTCAGTAGAGTCTTGAAACGTACGAA 535 Query 534 CCAAGGCATTAAAATGTATATCGACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAGCTTG 593 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 536 CCAAGGCATTAAAATGTATATAGACGCCATGAGAGAGCTAGAGGAAAAGGCTAGAGCTTG 595 Query 594 TTACGAAGGTCCCTTAAGTTTGAGTAGTAACGAATTTATCGAAATGCTAGTTCTTGATGG 653 ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| Sbjct 596 TTACGAAGGTCCCTTAAGTTTGAACAGTAACGAATTTATAGAAATGCTTGTTCTTGATGG 655 Query 654 TTGTTTTGTGCTTGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACTGAACTCGGATATGC 713 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 656 TTGTTTTGTTCTTGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACGGAACTCGGATATGC 715 Query 714 ACGTAACGATCCAGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACGTGACATGGT 773 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 716 ACGTAACGATCCAGTTTTTGCGATGAGAGGATCAATGCATTCGATTCAACGTGACATGGT 775 Query 774 AATGCTTGAAAATCAACTTCCTTTATTTGTTCTAAACCGGTTATTAGAGTTACAGCTTGG 833 |||||| ||||||||||||||||| |||||| ||||||| ||||||||| |||||||||| Sbjct 776 AATGCTAGAAAATCAACTTCCTTTGTTTGTTTTAAACCGATTATTAGAGCTACAGCTTGG 835 Query 834 TACACGGAACCAAACCGGTTTGGTGGCACAATTAGCAATTCGGTTCTTTGATCCACTAAT 893 |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 836 TACAAGGAACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTTGATCCACTAAT 895 Query 894 GCCAACGGACGAGCCGTTGACTAAATCTGGCCAGTCAAAACTCGAGAACTCACTGGCAAG 953 ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 896 GCCAACGGACGAGCCATTGACCAAATCTGGCCAGTCAAAACTCGAGAACTCGTTGGCAAG 955 Query 954 AGATAAATCCTTTGACCCATTCGCTGATATGGGTGAACTGCATTGTCTAGATGTTTTCCG 1013 ||||||| |||||||||||||||| |||||||| ||| | |||||||||||||||||||| Sbjct 956 AGATAAAGCCTTTGACCCATTCGCCGATATGGGAGAATTACATTGTCTAGATGTTTTCCG 1015 Query 1014 TCGTAGTTTGTTACGGTCTAGTCCTAAACCGGAGCCGAGGTTAACAAGAAAGAGATGGTC 1073 ||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1016 TCGAAGTTTGCTCCGGTCTAGTCCTAAACCGGAGCCTAGGTTAACAAGAAAGAGATGGTC 1075 Query 1074 TC---GAAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGATACATTGTGTGACGGA 1130 || |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1076 TCCTCGAAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGATACATTGTGTGACTGA 1135 Query 1131 ACTAAAAGAGGCTGGTATAAAATTCAGAAGAAGGAAAACCGACCGGTTTTGGGATATGCA 1190 ||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||| || Sbjct 1136 ACTAAGAGAGGCCGGTATTAAATTCAGGAGAAGGAAAACCGACCGGTTTTGGGATATTCA 1195 Query 1191 ATTCAAAAACGGTTATCTAGAAATACCGAGGCTACTTATCCATGACGGTACCAAATCTCT 1250 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 ATTCAAAAACGGTTGTCTAGAAATACCGAGGCTACTTATCCATGACGGTACCAAATCTCT 1255 Query 1251 TTTTCTGAATCTTATAGCTTTTGAGCAGTGTCATATCGATTCGAGCAATGATATAACATC 1310 ||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct 1256 TTTCCTGAATCTTATAGCTTTTGAGCAGTGCCATATCGATTCCAGTAATGACATAACATC 1315 Query 1311 CTACATAATCTTCATGGACAATCTAATAGATTCTCACGAAGATGTTAGCTACTTACACTA 1370 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1316 CTACATAATCTTCATGGACAATCTAATAGATTCTCATGAAGATGTTAGCTACTTACACTA 1375 Query 1371 CTGTGGTATCATCGAACATTGGCTAGGGAGCGATTCTGAAGTCGCGGATTTGTTCAACCG 1430 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1376 TTGTGGTATCATCGAACATTGGCTAGGGAGCGATTCTGAAGTCGCAGATTTATTCAACCG 1435 Query 1431 TTTATGTCAAGAAGTTGTATTCGACACCGAAGATAGCTATTTATCTAGGTTATCGATTGA 1490 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1436 TTTATGTCAAGAAGTTGTATTCGACACCGAAGATAGCTATCTATCTCGGTTATCGATTGA 1495 Query 1491 GGTTAATCGTTACTACGATCATAAGTGGAATGCTTGGAGGGCTACGTTGAAACATAAGTA 1550 |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1496 GGTTAACCGTTATTACGATCATAAGTGGAATGCTTGGAGGGCTACTTTGAAACATAAGTA 1555 Query 1551 CTTCAATAATCCATGGGCAATTGTTTCTTTCTGTGCTGCGGTTATTCTACTAGTCCTCAC 1610 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1556 CTTCAATAATCCATGGGCAATTGTTTCTTTCTGTGCTGCAGTTATTCTACTAGTCCTCAC 1615 Query 1611 TTTCTCTCAAAGTTTTTACGCTGTTTACGCTTATTATAAGCCACCTTCTTAACCTTATAA 1670 |||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 1616 TTTCTCTCAAAGTTTTTACGCTGTATATGCTTATTATAAACCACCTTCTTAACCTTATAC 1675 Query 1671 -CTTGTTTT 1678 |||||||| Sbjct 1676 GCTTGTTTT 1684 > Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1 Length=1771 Score = 1140 bits (617), Expect = 0.0 Identities = 1296/1617 (80%), Gaps = 73/1617 (5%) Strand=Plus/Plus Query 83 ACAAAGACATGTTGAGC-TGGTACTTACTCACCCTTAAGATCCGCGAAAAACTCGAAA-C 140 ||||||||||||| | | |||||||| |||| ||| ||| ||||| ||||| || ||| | Sbjct 97 ACAAAGACATGTT-AACTTGGTACTTGCTCAGCCTCAAGCTCCGCCAAAAATTCCAAACC 155 Query 141 ACAAAACCAAGAATCCGTATTGGTTAATCAAGATCAAAACCTCCCCGGTTTACCCGAAAT 200 | |||||||| | || | | || | ||||||||| || |||| ||||||| |||| || Sbjct 156 A-AAAACCAACACTCGGAACCGG-T--TCAAGATCAGAATCTCCACGGTTTATCCGAGAT 211 Query 201 CACCAGATCCGATCAAGATCAAAACATTCATAACAACCAGCAAACTCAATCCGA-TCCCG 259 || | | |||||| |||||| |||| ||| || | || ||||| ||||| | ||| Sbjct 212 -TCC-G----GTTCAAGACCAAAACTTTCAGAACCACAAACAGACTCATTCCGAGT-CCG 264 Query 260 CTATCTACGTAATCA-AAGAGAGTCCAAAAGAT-TCAC--GAGACG--A-TTGGGTGATC 312 || | || | | ||||||| ||| |||| ||| |||| | | |||||||||| Sbjct 265 GTAAGGAGGTGGT-AGAAGAGAGGCCAGGAGATACCACAGGAGAAGACAGTTGGGTGATC 323 Query 313 TCGATCACAGACAAGCTCGAACAAGCACATAGAGATGATGACACAACACTCTGGGGTAAG 372 || || | ||||||| |||| |||||||||||||| || |||||| || | ||||| ||| Sbjct 324 TCAATAAGAGACAAGGTCGAGCAAGCACATAGAGACGACGACACAGCAATTTGGGGAAAG 383 Query 373 CTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAACGACAACAAATCGTATTTCCCT 432 ||||| ||||||||||||||| ||||||| |||| |||||||| || ||||| |||||| Sbjct 384 CTCTGCATCTACAGAGTTCCACATTACCTGAAAGAGAACGACAAGAAGTCGTACTTCCCT 443 Query 433 CAGACAGTCTCGCTTGGTCCGTACCATCATGGTAAGAAA-CGGCTCCGGTCTATGGACCG 491 ||||| || ||||||||||||||||| |||||||| ||| || |||||| ||||||| || Sbjct 444 CAGACCGTTTCGCTTGGTCCGTACCACCATGGTAA-AAAGCGTCTCCGGCCTATGGAGCG 502 Query 492 TCACAAATGGCGTGCTGTCAAT-AGAGTCTTGAAACGTACGAACCAAG-GCATTA-AAAT 548 ||||| ||||| || |||||| || ||| |||||||| || | || ||| || |||| Sbjct 503 CCACAAGTGGCGCGCGGTCAATAAG-GTCCTGAAACGTTTAAAGC-AGCGCA-TAGAAAT 559 Query 549 GTATATC-GACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAGCTTGTTACGAAGGTCCC- 606 ||||| | | |||||||||||||| || || |||||||| ||||| |||||||||||| Sbjct 560 GTATA-CTAATGCCATGAGAGAGCTTGAAGAGAAGGCTCGTGCTTGCTACGAAGGTCCCA 618 Query 607 TTAAGTTTGAGTAGTAACGAATTTATC-GAAATGCTAGTTCTTGATGGTTGTTTTGTGCT 665 || |||||||| ||||| || || | | |||||||| ||||||||||| |||||||| || Sbjct 619 TT-AGTTTGAGCAGTAATGAGTTCA-CTGAAATGCTTGTTCTTGATGGCTGTTTTGTTCT 676 Query 666 TGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACTGAACTCGGATATGCACGTAACGATCC 725 |||||||| || ||| | ||||||||||| || ||| | |||||||| || |||||||| Sbjct 677 CGAGCTCTTCAGGGGAACTGTTGAAGGATTTACCGAAATAGGATATGCGCGCAACGATCC 736 Query 726 AGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACGTGACATGGTAATGCTTGAAAA 785 |||||||| ||| |||||| |||||||||||||||||| |||||| ||||||| ||||| Sbjct 737 GGTTTTCGCAATGCGAGGATTGATGCATTCGATTCAACGAGACATGATAATGCTGGAAAA 796 Query 786 TCAACTTCCTTTATTTGTTCTAAACCGGTTATTAGAGTTACAGCTTGGTACACGGAACCA 845 |||||||||| | || ||||| ||||||| ||||||||||||||||||||| |||||| Sbjct 797 TCAACTTCCTCTGTTCGTTCTCGACCGGTTGCTAGAGTTACAGCTTGGTACACAGAACCA 856 Query 846 AACCGGTTTGGTGGCACAAT-TAGCAATTCGGTTCTTTGATCCACTAATGCCAAC-GGAC 903 ||||||| | ||||||| || |||| || ||||||||| || ||||||||||| ||| Sbjct 857 AACCGGTATAGTGGCAC-ATGTAGCTGTTAAGTTCTTTGACCCGCTAATGCCAACGGGA- 914 Query 904 GAGCCGTTGACTAAATCTGG-CCAGTCAAAACTCGA-GAACTCACTGGCAAGAGATAAAT 961 ||| |||| || ||| | || ||||||||| ||| | | | |||||| | || |||| Sbjct 915 GAGGCGTTAACCAAA-CCGGACCAGTCAAAGCTC-ATG-A---ACTGGC-TG-GAAAAAT 966 Query 962 CCTTTGACCCA-TTCGCTGATATGGGTGAACTGCATTGTCTAGATGTTTTCCGTCGTAGT 1020 |||| ||| || || | ||| | ||| || |||| ||| | |||||||||||||| ||| Sbjct 967 CCTTGGACACACTT-GGTGACAAGGGCGAGTTGCACTGTTTGGATGTTTTCCGTCGAAGT 1025 Query 1021 -TTGTTACGGTCTAGTCCTAAACCGGAGCCGAGGTTAAC-AAGAAAGAGATGGTCTCGAA 1078 | || | |||||||||| |||| | | | | | | | |||||||| || ||| Sbjct 1026 CTACTT-CACTCTAGTCCTACACCGAATAC-AAGATCTCTACTAAAGAGATTAACTAGAA 1083 Query 1079 ACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGATACATTGTGTGACGGAACTAAAAG 1138 | ||||| |||| ||||||||| | |||||| || ||||||| ||||||||||||| | Sbjct 1084 ATACGCGAGTGGTGGACAAGCGACAACAACAAATGGTACATTGCGTGACGGAACTAAGGG 1143 Query 1139 AGGCTGGTATAAAATTCA-GAAGAAGGAAAACCGACCGGTTTTGGGATA-TGCAATTCAA 1196 | |||||| | || |||| ||| |||||||||||||||||||||||||| || ||||||| Sbjct 1144 AAGCTGGTGTGAAGTTCAGGAA-AAGGAAAACCGACCGGTTTTGGGATATTG-AATTCAA 1201 Query 1197 AAACGGTTATCTAGAAATACCGAGGCTACTTATCCATGACGGTACCAAATCTCTTTTTCT 1256 ||| ||||||||||||||||| | ||||| |||||||| ||||| || |||| | |||| Sbjct 1202 AAATGGTTATCTAGAAATACCCAAACTACTAATCCATGATGGTACTAAGTCTC-TCTTCT 1260 Query 1257 -GAATCTTATAGCTTTTGAGCAGTGTCATATCGATTCGAGCAATGATATAACATCCTACA 1315 ||||||||||||||||||||||||||||| || |||||||| | ||||||||||||| Sbjct 1261 CAAATCTTATAGCTTTTGAGCAGTGTCATATTGAGTCGAGCAACCACATAACATCCTACA 1320 Query 1316 TAATCTTCATGGACAATCTAATAGATTCT-CACGAAGATGTTAGCTACTTACACTACTGT 1374 |||| |||||||| ||||||||| | || | ||||||||||||||||| || || ||| Sbjct 1321 TAATTTTCATGGATAATCTAATAAACGCTTCT-GAAGATGTTAGCTACTTGCATTATTGT 1379 Query 1375 GGTATCATCGAACATTGGCTAGGGAGCGATTCTGAAGTCGCGGATTTGTTCAACCGTTTA 1434 ||||||||||| |||||||| || || ||||||||||| ||||||||||||||||| || Sbjct 1380 GGTATCATCGAGCATTGGCTTGGTAGTGATTCTGAAGTTGCGGATTTGTTCAACCGGCTA 1439 Query 1435 TGTCAAGAAGTTGTATTCGACACCGAA-GATAG-CTATTTATCTAGGTTATC-GATTGAG 1491 ||||||||||| || ||||| ||||| ||||| | || ||||| | | || | | || Sbjct 1440 TGTCAAGAAGTGGTTTTCGAT-CCGAAAGATAGTC-ATCTATCTCGACTGTCTGGT-GAT 1496 Query 1492 GTTAATCGTTACTACGATCATAAGTGGAATGCTTGGAGGGCTACGTTGAAACATAAGTAC 1551 || || ||||| ||| ||| ||||||||||| || || |||||| |||| || |||||| Sbjct 1497 GTAAACCGTTATTACAATCGTAAGTGGAATGTTTTGAAGGCTACCTTGACGCACAAGTAC 1556 Query 1552 TTCAATAATCCATGGGCA-ATTGTTTCTTTCTGTGCTGCGGTTATTCTACTAGTCCTCAC 1610 ||||| ||||| |||||| ||| ||||||| | |||||| |||||| | ||| | ||||| Sbjct 1557 TTCAACAATCCTTGGGCATATT-TTTCTTTTTCTGCTGCAGTTATTTTGCTACTTCTCAC 1615 Query 1611 TTTCTCTCAAAGTTTTTACGCTGTTTACGCTTATTATAAGCCACCTTCTTAACCTTA 1667 || | ||| ||||| |||||||| || ||||||||||||||| |||| ||| ||| Sbjct 1616 ATTATGTCAGAGTTTCTACGCTGTGTATGCTTATTATAAGCCAAATTCTAAACTTTA 1672 > Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866 Length=1695 Score = 1079 bits (584), Expect = 0.0 Identities = 1136/1395 (81%), Gaps = 67/1395 (5%) Strand=Plus/Plus Query 293 CACGA-GACGATTGGGTGATCTCGATCACAGACAAGCTCGAACAAGCACATAGAGATGAT 351 ||||| || || ||||||||||| |||| ||||||| | || ||||| | |||||| || Sbjct 335 CACGAGGA-GAATGGGTGATCTCAATCAGAGACAAGATGGAGCAAGCGCTTAGAGAAGAC 393 Query 352 GACACAAC-ACTCTGGGGTAAGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAA 410 | |||||| | | |||| ||||| |||||||||||||||||| | ||||||||||| || Sbjct 394 GCCACAACTAGT-TGGGACAAGCTATGTATCTACAGAGTTCCACAATACCTTCAAGAGAA 452 Query 411 CGACAACAAATCGTATTTCCCTCAGACAGTCTCGCTTGGTCCGTACCATCATGGTAAGAA 470 | |||| || || |||||||||||||| ||||| |||||||||| || ||||| || || Sbjct 453 CAACAAGAAGTCCTATTTCCCTCAGACCGTCTCACTTGGTCCGTTTCACCATGGCAACAA 512 Query 471 ACGGCTCCGGTCTATGGACCGTCACAAATGGCGTGCTGTCAATA-GAGTCTTGAAACGTA 529 || |||| | |||||||||||||| |||||||| ||||||| | ||| || ||||| Sbjct 513 ACATCTCCTACCCATGGACCGTCACAAGTGGCGTGCAGTCAATATG-GTCATGGCACGTA 571 Query 530 CGAACCAAGGCATTAAAATGTATATCGACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAG 589 | || || | |||| |||||||||| |||||||||| |||||| || || | |||||| | Sbjct 572 CCAAACACGACATTGAAATGTATATTGACGCCATGAAAGAGCTTGAAGACAGGGCTCGTG 631 Query 590 CTTGTTACGAAGGTCCCTTA-AG-TTTGAGTAGTAACGAA-TT-TATCGAAATGCTAGTT 645 |||| ||||||||| || || || |||||| || ||| || || | | |||||| | ||| Sbjct 632 CTTGCTACGAAGGT-CC-TATAGATTTGAGCAGCAAC-AAGTTCTGT-GAAATGTTGGTT 687 Query 646 CTTGATGGTTGTTTTGTGCTTGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACTGAACTC 705 |||||||||||||| || || |||||||| |||||||| | |||||||||| | |||||| Sbjct 688 CTTGATGGTTGTTTCGTTCTCGAGCTCTTCAGAGGAGCTGATGAAGGATTCTCGGAACTC 747 Query 706 GGATATGCA-CGTAACGATCCAGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACG 764 ||||||| | |||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct 748 GGATATG-ATCGTAACGATCCAGTTTTCGCAATGCGAGGATCAATGCATTCGATTCAACG 806 Query 765 TGACATGGTAATGCTTGAAAATCAACTTCCTTTATTTGTTCTAAACCGGTTATTAGAGTT 824 ||||||||||||||| ||||||||||||||||| || ||||| ||||||||| ||||| | Sbjct 807 TGACATGGTAATGCTAGAAAATCAACTTCCTTTGTTCGTTCTCAACCGGTTACTAGAGAT 866 Query 825 ACAGCTTGGTACA-CGGAACCAAACCGGTTTGGTGGCACAATTAGCAATTCGGTTCTTTG 883 |||||||||| || ||| ||||||||||||| ||||| ||||||||| | |||||||||| Sbjct 867 ACAGCTTGGT-CAACGGCACCAAACCGGTTTAGTGGCGCAATTAGCAGTACGGTTCTTTG 925 Query 884 ATCCACTAATGCCAACGGACGAGCCGTTGACTAAATCTGGCCAGTCAAAACTCGAGAACT 943 ||||||||||||| || || |||| |||||| | | ||| | ||| |||| Sbjct 926 ATCCACTAATGCCTACCGATGAGCTGTTGAC-----C-----A---AAA-C-CGACAACT 970 Query 944 CACTGGCAAGA-GATAAATCCTTTGACCC-ATTCGCTGATATGG----GTGA-ACT-GCA 995 || ||| || | ||||||| |||| |||| ||| || |||| || | || | | ||| Sbjct 971 CATTGGAAA-ATGATAAATTCTTTAACCCGATT-GCCGATAAGGACAAGGGAGAGTTGCA 1028 Query 996 TTGTCTAGATGTTTTCCGTCGTAGTTTG-TTACGGTCTAGTCCTAAACCGGAGCCGAGGT 1054 ||||||||||||||||||||| | | | || ||| || || | |||||||||||||||| Sbjct 1029 TTGTCTAGATGTTTTCCGTCGAAATCTACTT-CGGCCTTGTTCGAAACCGGAGCCGAGGT 1087 Query 1055 TAACAAGAAAGAGATGGTC-TCGAAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTG 1113 || |||||| ||||||||| | |||| || ||||||||||| ||||||| |||||| || Sbjct 1088 TATCAAGAAGGAGATGGTCGTGGAAA-ACTCGTGTGGCGGATAAGCGCCAACAACAACTG 1146 Query 1114 ATACATTGTGTGACGGAACTAAAAGAGGCTGGTATAAAATTCAGAAGAAGGAAAACCGAC 1173 |||||||| ||||| ||||||| ||| |||||||| ||||||||||| |||||||||||| Sbjct 1147 ATACATTGCGTGACCGAACTAAGAGAAGCTGGTATTAAATTCAGAAGGAGGAAAACCGAC 1206 Query 1174 CGGTTTTGGGATATGCAA-TTCAAAAACGGTTATCTAGAAATACCGAGGCTACTTATCCA 1232 |||||||||||||| | ||| ||||||||||||| || ||||| | ||||| ||||| Sbjct 1207 CGGTTTTGGGATATT-AGGTTCGAAAACGGTTATCTCGAGATACCTAAACTACTAATCCA 1265 Query 1233 TGACGGTACCAAATCTCTTTT-TCTGAATCTTATAGCTTTTGAGCAGTGTCATATCGATT 1291 |||||||||||||||||| || || ||||||||||||||| || ||||||||||| || | Sbjct 1266 TGACGGTACCAAATCTCTCTTCTC-GAATCTTATAGCTTTCGAACAGTGTCATATTGACT 1324 Query 1292 CGAGCAATGATATAACATCCTACATAATCTTCATGGACAATCTAATAGATTCTC-ACGAA 1350 ||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||| | ||| Sbjct 1325 CGAGCAACGATATAACATCATACATAATCTTTATGGATAATCTAATAGATTCTCCA-GAA 1383 Query 1351 GATGTTAGCTACTTACACTACTGTGGTATCATCGAACATTGGCTAGGGAGCGATTCTGAA 1410 |||||||| || || || || ||||||||||||||||||||| |||| | |||| |||| Sbjct 1384 GATGTTAGTTATTTGCATTATTGTGGTATCATCGAACATTGGTTAGGAAATGATTATGAA 1443 Query 1411 GTCGCGGATTTGTTCAACCGTTTATGTCAAGAAGTTG-TATTCGACACCGAAGATAGCTA 1469 || ||||||||||||||||| ||||||||||||| | | |||||| || || |||| || Sbjct 1444 GTTGCGGATTTGTTCAACCGGCTATGTCAAGAAGTGGCT-TTCGACCCCCAAAATAGTTA 1502 Query 1470 TTTATCT-AGGTTATCGATTGAGGTTAATCGTTACTACGATCAT-AAGTGGAATGCT-TG 1526 |||||| | | |||| | | ||| |||| | || | | |||||||||| | || Sbjct 1503 TTTATCGCAACTG-TCGAATAAAGTTGATCGGAATTAT-AGCCGCAAGTGGAATGTTCTG 1560 Query 1527 GAGG-GCTACGTTGAAACATAAGTACTTCAATAATCCATGGGCA-ATTGTTTCTTTCTGT 1584 ||| | | | || ||||| ||||||||||||||||| |||||| ||| | ||||| | | Sbjct 1561 AAGGCGAT-C-TTAAAACACAAGTACTTCAATAATCCTTGGGCATATT-TCTCTTTTTTT 1617 Query 1585 GCTGCGGTTATTCTACTAGTCCTCACTTTCTCTCAAAGTTTTTACGCTGTTTA-CGCTTA 1643 ||||| || | || ||| | ||||| || | ||| ||||||| | ||| ||| | |||| Sbjct 1618 GCTGCACTTGTCCTGCTATTTCTCACGTTATTTCAGAGTTTTTTCACTGCTTATC-CTTA 1676 Query 1644 TTATAAGCCACCTTC 1658 || | | |||||||| Sbjct 1677 TTTTTACCCACCTTC 1691 > Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1 Length=1463 Score = 414 bits (224), Expect = 9e-115 Identities = 541/686 (79%), Gaps = 53/686 (8%) Strand=Plus/Plus Query 484 ATGGACCGTCACAAATGGCGTGCTGTCAATA-GAGTCTTGAAACGTACGAACCAAGGCAT 542 |||||| ||||||||||||||| ||||||| | ||| |||||||||| || |||||||| Sbjct 387 ATGGACTATCACAAATGGCGTGCGGTCAATATG-GTCATGAAACGTACCAAGCAAGGCAT 445 Query 543 TAAAATGTATATCGACGCCATGAGAGAGCTAGAGGAAAAGGCTCGAGCTTGTTACGAAGG 602 | ||||||| |||||||||| |||||| || || | |||||| |||| ||| |||| Sbjct 446 CGGATTGTATATTGACGCCATGAAAGAGCTCGAAGAGAGGGCTCGTTCTTGCTACAAAGG 505 Query 603 TCCCT-TAAGTTTGAGTAGTAACGAA-TTTATCGAAATGCTAGTTCTTGATGGTTGTTTT 660 | | | | ||||||| |||||| || || | | |||||||||||||||||||||||||| Sbjct 506 T-CGTATTGGTTTGAGCAGTAAC-AAGTTCACCCAAATGCTAGTTCTTGATGGTTGTTTT 563 Query 661 GTGCTTGAGCTCTTTAGAGGAGCCGT-TGAAGGATTCACTGAA-CTCGGATATGCA--CG 716 || || || ||||| ||||||||| | |||||||||| |||| || ||||| || || Sbjct 564 GTTCTCGATCTCTTCAGAGGAGCC-TATGAAGGATTCT-TGAAACTTGGATA--CAATCG 619 Query 717 TAACGATCCAGTTTTCGCGATGAGAGGATCGATGCATTCGATTCAACGTGACATGGTAAT 776 |||||||| ||||| || ||| ||||||||||||||||||||| |||||||||| |||| Sbjct 620 AAACGATCCCGTTTTTGCCATGCGAGGATCGATGCATTCGATTCGACGTGACATGCTAAT 679 Query 777 GCTTGAAAATCAACTTCCTTTATTTGTTCT-AAACCGGTTATTAGAGTTACAGCTTGGTA 835 ||| ||||||||||||||||| ||||| || |||||||||||||||| |||| || |||| Sbjct 680 GCTGGAAAATCAACTTCCTTTGTTTGT-CTTAAACCGGTTATTAGAGCTACAACTCGGTA 738 Query 836 CACGGA-ACCAAACCGGTTTGGTGGCACAATTAGCAATTCGGTTCTTTGATCCACTAATG 894 ||| | ||||||||||||| |||||||||||||| |||||||||| |||| | ||| Sbjct 739 CACA-ATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTCAATCCGTTGATG 797 Query 895 CCAACGGACGA-GCCGTTGACTAAATCTGGCCAGTCAAAACTCGAGAACTCACTGGCAAG 953 ||||| | | ||| | | || | | | ||| | || ||||| | | || Sbjct 798 CCAACCTAT-ATGCCAT---C-AA--C---C-A---AAAT-T-GACAACTCGCAAGAAA- 840 Query 954 AGA-TAAATCCTTTGACCCA-TTCGCTGATATGG-GT-G-AAC--T-GCATTGTCTAGAT 1005 | | ||||| |||| ||||| || ||||| | || | | || | ||| ||||| ||| Sbjct 841 ACAATAAATTCTTTAACCCAATT-GCTGACAAGGAGAAGGAAGAGTTGCACTGTCTGGAT 899 Query 1006 GTTTTCCGTCGTAGTTTGTTACGGTCTAGTCCT-AAACCGGAGCCGAGGTTAACAAGAAA 1064 ||||||||||| ||| || | | | |||||| | ||||||||||| |||||| | ||| Sbjct 900 GTTTTCCGTCGAAGTCTGCTCCAGCCTAGTC-TGAAACCGGAGCCAAGGTTATCGCGAA- 957 Query 1065 G-AGATGGTCTCG-AAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGA-TACATTG 1121 | ||||||||| | |||| ||| ||||||||||||||||| |||||| | | ||||||| Sbjct 958 GTAGATGGTCTAGGAAAC-CGCTTGTGGCGGACAAGCGCCAACAACAACT-ACTACATTG 1015 Query 1122 TGTGACGGAACTAAAAGAGGCTGGTA 1147 ||||| ||||||| |||||| |||| Sbjct 1016 CGTGACAGAACTAAGAGAGGCCGGTA 1041 > Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137 Length=1743 Score = 353 bits (191), Expect = 2e-96 Identities = 415/519 (80%), Gaps = 32/519 (6%) Strand=Plus/Plus Query 1165 AAAACCGACCGGTTTTGGGATATGCAATTCAAAAACGGTTATCTAGAAATACCGAGGCTA 1224 ||||||||||||||||||||||| |||||| |||||||||||||| ||||| || ||| Sbjct 1234 AAAACCGACCGGTTTTGGGATATTAAATTCAGCAACGGTTATCTAGAGATACCCAGTCTA 1293 Query 1225 CTTATCCATGACGGTACCAAATCTCTTTTTC-TGAATCTTATAGCTTTTGAGCAGTGTCA 1283 ||||||||||| ||||||||||||| | ||| ||||||| |||||||||||||||||||| Sbjct 1294 CTTATCCATGATGGTACCAAATCTC-TCTTCTTGAATCTCATAGCTTTTGAGCAGTGTCA 1352 Query 1284 TATCGATTCGAGCAATGATATAACATCCTACATAATCTTCATGGACAATCTAATAGATTC 1343 | |||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 1353 TCTCGAGTCGAGCAATGATATAACATCCTACATAATTTTTATGGACAATTTAATAGATTC 1412 Query 1344 TCAC-GAAGATGTTAGCTACTTACA-CTACTGTGGTATCATCGAACATTGGCTAGGGAGC 1401 || | |||||| |||| || || || | || ||||||| || || || | ||||| || Sbjct 1413 TC-CTGAAGATATTAGTTATTTGCATC-ACCGTGGTATTATTGAGCACTCTCTAGGAAGT 1470 Query 1402 GATTCTGAAGTCGCGGATTTGTTCAACC-GTTTATGTCAAGAAGTTGTATTCGACACCGA 1460 |||||||||| |||||| ||||||||| ||| |||||| ||||| || ||||||||| | Sbjct 1471 AATTCTGAAGTTGCGGATATGTTCAACCAGTT-ATGTCAGGAAGTGGTTTTCGACACCAA 1529 Query 1461 AGATAGCTATTTATCT-AGGTTATCGATTGAGGTTAATCGTTACTACGATCATAAGT--- 1516 ||||| ||| |||| | || | || ||||||| |||||| ||| || || || | Sbjct 1530 AGATATTTATCTATCCCAA-TTGTTGAGTGAGGTTCATCGTTGCTATGAACAAAACTACT 1588 Query 1517 ---GGAA-T-G----CTTGGAGGGCTACGTTGAAACATAAGTACTTCA-ATAATCCATGG 1566 |||| | | ||| || || || |||||||| |||||||| | |||| || ||| Sbjct 1589 CCAGGAAGTTGAATTCTTTGACAGCGACCTTGAAACACAAGTACTT-AGATAACCCTTGG 1647 Query 1567 GCA-ATTGTTTCTTTC-TGTGCTGCGGTTATTCTACTAGTCCTCACTTTCTCTCAAAGTT 1624 || ||| | |||||| | ||| || |||||||| ||| | || || || |||||||||| Sbjct 1648 GCGTATT-TGTCTTTCAT-TGCGGCAGTTATTCTTCTAATTCTTACATTATCTCAAAGTT 1705 Query 1625 -TTTACGCTGTTTACGCTTATTATAAGCCA-CCTTCTTA 1661 ||| |||| ||| ||||||| ||| ||| ||| |||| Sbjct 1706 ATTTT-GCTGCTTATGCTTATTTTAATCCATCCT-CTTA 1742 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68295809285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5