BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50130.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866 2647 0.0
Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1 1009 0.0
> Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866
Length=1695
Score = 2647 bits (1433), Expect = 0.0
Identities = 1611/1697 (95%), Gaps = 12/1697 (1%)
Strand=Plus/Plus
Query 52 ATGGTGCGTATTCTTTCTTTTAcaccaccgcctcctccaccaccaccaccatcgtttaga 111
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTACGTATTCTTTCATTTACACCACCGCCTCCTCCACCACCACCACCATCGTTTAGA 60
Query 112 tcaattcctcgtccaccaccaccaccaTCTTTTAGATCAATTCCTCCTCGGCGGCATTTC 171
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 TCAATTCCTCGTCCACCACCACCACCATCGTTTAGATCAATTCCTCCTCGGCGGCACTTC 120
Query 172 TTCAAAAAGAAAAGCAAAAGTCTaccaccaccaccaccaccGCTACCGCCAGCACGACCA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TTCAAAAAGAAAAGCAAAAGTCTACCACCACCACCACCACCGCTACCGCCAGCGCGACCA 180
Query 232 TTTGGACCGATTCTTCCTTGGCGGTATTCTGTCAAAAGAAAAA-GAACTAATCGACCACA 290
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 181 TTTGGACCGATTCTTCCTTGGCGGTATTCTGTCAAAAGAAAAAGGAA-TAATCGACTACA 239
Query 291 ACCGTCTACGATCCAGAAAGACATGTTCACATGGTACTTTCTCACCCTCATGATGCGCca 350
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 ACCGTCTACGATCCAGAAAGACATGTTGACATGGTACTTACTCACCCTCATGATGCGCCA 299
Query 351 aaaactccaaaaacaaaaccaaa-aacCCGAAGAGACACGAGAAGAATGGGTGATCTCAA 409
||||||||| || | ||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 300 AAAACTCCATAACCGAAA-CAAACAACCCGAAGAGACACGAGGAGAATGGGTGATCTCAA 358
Query 410 TTAGAGACAAAATGGAGCAAGCACTTAGAGAAGACGCCACAACTAGTTGGGACAAACTAT 469
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 359 TCAGAGACAAGATGGAGCAAGCGCTTAGAGAAGACGCCACAACTAGTTGGGACAAGCTAT 418
Query 470 GTATCTATAGAGTTCCACAATACCTTCAAGAGAACAACAAGAAGTCCTATTTCCCTCAGA 529
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTATCTACAGAGTTCCACAATACCTTCAAGAGAACAACAAGAAGTCCTATTTCCCTCAGA 478
Query 530 CTGTCTCACTTGGTCCGTTCCACCATGGCAACAAACATCTCCTACCCATGGACCGTCACA 589
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCGTCTCACTTGGTCCGTTTCACCATGGCAACAAACATCTCCTACCCATGGACCGTCACA 538
Query 590 AGTGGCGTGCAGTCAATATGGTCATGGCACGTACCAAACACGACATTGAAATGTATATTG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGTGGCGTGCAGTCAATATGGTCATGGCACGTACCAAACACGACATTGAAATGTATATTG 598
Query 650 ACGCCATGAAAGAACTCGAAGACAGGGCTCGTGCTTGCTATGAAGGTCCTATAGATTTGA 709
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 ACGCCATGAAAGAGCTTGAAGACAGGGCTCGTGCTTGCTACGAAGGTCCTATAGATTTGA 658
Query 710 GCAGCAACAAGTT-TAGTGAAATGCTGGTTCTTGATGGTTGTTTCGTTCTTGAACTCTTT 768
||||||||||||| | |||||||| ||||||||||||||||||||||||| || |||||
Sbjct 659 GCAGCAACAAGTTCT-GTGAAATGTTGGTTCTTGATGGTTGTTTCGTTCTCGAGCTCTTC 717
Query 769 AGAGGAGCTGATGAAGGATTCTCCGAACTAGGATATGATCGTAACGATCCAGTTTTCGCA 828
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 718 AGAGGAGCTGATGAAGGATTCTCGGAACTCGGATATGATCGTAACGATCCAGTTTTCGCA 777
Query 829 ATGCGAGGATCAATGCATTCGATTCAACGTGACATGGTAATGCTAGAAAATCAACTCCCT 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 ATGCGAGGATCAATGCATTCGATTCAACGTGACATGGTAATGCTAGAAAATCAACTTCCT 837
Query 889 TTGTTTGTTCTCAACCGGTTATTAGAGATACAGCTTGGTAAACGGCACCAAACCGGTTTA 948
||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 838 TTGTTCGTTCTCAACCGGTTACTAGAGATACAGCTTGGTCAACGGCACCAAACCGGTTTA 897
Query 949 GTGTCGCGATTAGCAGTTCGGTTCTTTGATCCACTAATGCCAACCGACGAGCCGTTGACC 1008
||| ||| ||||||||| ||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 898 GTGGCGCAATTAGCAGTACGGTTCTTTGATCCACTAATGCCTACCGATGAGCTGTTGACC 957
Query 1009 AAAACCGACGACTCGCTGGAACAA-GATAAATTCTTTAACCCAATTGCTGATAAGGACAA 1067
||||||||| |||| ||||| || ||||||||||||||||| ||||| |||||||||||
Sbjct 958 AAAACCGACAACTCATTGGAA-AATGATAAATTCTTTAACCCGATTGCCGATAAGGACAA 1016
Query 1068 GGGTGAGTTGCACTGTCTAGATGTTTTCCGTCGAAATCTACTTCGGCCTTGTTCGAATCC 1127
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 GGGAGAGTTGCATTGTCTAGATGTTTTCCGTCGAAATCTACTTCGGCCTTGTTCGAAACC 1076
Query 1128 GGAGCCAAGGTTATCACGAATGAGATGGTCATGGAGAACTCGCGTGGCGGATAAGCGCCA 1187
|||||| ||||||||| ||| ||||||||| |||| |||||| |||||||||||||||||
Sbjct 1077 GGAGCCGAGGTTATCAAGAAGGAGATGGTCGTGGAAAACTCGTGTGGCGGATAAGCGCCA 1136
Query 1188 ACAACAACTGATACATTGCGTGACCGAACTAAGAGAAGCCGGTATTAAATTCAGGACGAG 1247
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1137 ACAACAACTGATACATTGCGTGACCGAACTAAGAGAAGCTGGTATTAAATTCAGAAGGAG 1196
Query 1248 GAAAACCGACCGGTTTTGGGATATTCGATTCAAAAACGGTTATCTCGAGATACCAAAACT 1307
||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||
Sbjct 1197 GAAAACCGACCGGTTTTGGGATATTAGGTTCGAAAACGGTTATCTCGAGATACCTAAACT 1256
Query 1308 ACTAATCCATGACGGTACCAAATCTCTCTTCTCGAATCTTATAGCCTTCGAACAATGTCA 1367
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1257 ACTAATCCATGACGGTACCAAATCTCTCTTCTCGAATCTTATAGCTTTCGAACAGTGTCA 1316
Query 1368 TATTGACTCGAGCAACGATATAACATCGTACATAATCTTTATGGATAATCTAATAGATTC 1427
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 TATTGACTCGAGCAACGATATAACATCATACATAATCTTTATGGATAATCTAATAGATTC 1376
Query 1428 GTCG-GAAGATGTTAGGTATTTGCATTATTGTGGTATCATCGAACATTGGTTAGGGAATG 1486
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1377 -TCCAGAAGATGTTAGTTATTTGCATTATTGTGGTATCATCGAACATTGGTTAGGAAATG 1435
Query 1487 ATTATGAAGTTGCGGATTTGTTCAACCGGTTATGTCAAGAAGTGGCTTTCGACCCCCAAA 1546
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1436 ATTATGAAGTTGCGGATTTGTTCAACCGGCTATGTCAAGAAGTGGCTTTCGACCCCCAAA 1495
Query 1547 ATAGTTATTTGTCACAATTGTCGAATAAAGTTGATCGGAATTATAGCCGAAAGTGGAATG 1606
|||||||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1496 ATAGTTATTTATCGCAACTGTCGAATAAAGTTGATCGGAATTATAGCCGCAAGTGGAATG 1555
Query 1607 TTCTGAAGGCGATCTTAAAACACAAGTACTTCAATAATCCTTGGGCATACTTCTCttttt 1666
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1556 TTCTGAAGGCGATCTTAAAACACAAGTACTTCAATAATCCTTGGGCATATTTCTCTTTTT 1615
Query 1667 ttGCTGCTCTTGTCCTGCTAGTTCTCACGTTATTTCAGAGTTTCTTT-ACTGCTTATCCT 1725
||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 1616 TTGCTGCACTTGTCCTGCTATTTCTCACGTTATTTCAGAGTTT-TTTCACTGCTTATCCT 1674
Query 1726 TATTTTAACCCACCTTC 1742
|||||| ||||||||||
Sbjct 1675 TATTTTTACCCACCTTC 1691
> Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1
Length=1687
Score = 1009 bits (546), Expect = 0.0
Identities = 1129/1402 (81%), Gaps = 74/1402 (5%)
Strand=Plus/Plus
Query 386 CACGAGAAGAATGGGTGATCTCAATTAGAGACAAAATGGAGCAAGCACTTAGAGAAGACG 445
||||||| || ||||||||||| || | ||||| | || ||||| | |||||| || |
Sbjct 295 CACGAGACGATTGGGTGATCTCCATCACTGACAAGCTCGAACAAGCGCATAGAGACGATG 354
Query 446 CCAC-A-ACTAGTTGGGACAAACTATGTATCTATAGAGTTCCACAATACCTTCAAGAGAA 503
||| | ||| | |||| || || |||||||| ||||||||| | ||||||||||| ||
Sbjct 355 ACACGACACT-CTGGGGA-AAGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAA 412
Query 504 CAACAAGAAGTCCTATTTCCCTCAGACTGTCTCACTTGGTCCGTTCCACCATGGCAACAA 563
| |||| || || |||||||||||||| ||||| |||||||||| ||| || || || ||
Sbjct 413 CGACAACAAATCGTATTTCCCTCAGACCGTCTCGCTTGGTCCGTACCATCACGGTAAAAA 472
Query 564 ACATCTCC--TACCCATGGACCGTCACAAGTGGCGTGCAGTCAATATG-GTCATGGCACG 620
|| ||||| || |||||||||||||| |||||||| |||| || | ||| || |||
Sbjct 473 ACGTCTCCGGTA--TATGGACCGTCACAAATGGCGTGCGGTCAGTA-GAGTCTTGAAACG 529
Query 621 TACCAAACACGACATTGAAATGTATATTGACGCCATGAAAGAACTCGAAGACAGGGCTCG 680
||| || || | |||| |||||||||| |||||||||| ||| || || || | |||| |
Sbjct 530 TACGAACCAAGGCATTAAAATGTATATAGACGCCATGAGAGAGCTAGAGGAAAAGGCTAG 589
Query 681 TGCTTGCTATGAAGGT-CC-TATAGATTTGAGCAGCAAC-AAGTTTAGT-GAAATGCTGG 736
||||| || |||||| || || || ||||| ||| ||| || |||| | |||||||| |
Sbjct 590 AGCTTGTTACGAAGGTCCCTTA-AG-TTTGAACAGTAACGAA-TTTA-TAGAAATGCTTG 645
Query 737 TTCTTGATGGTTGTTTCGTTCTTGAACTCTTTAGAGGAGCTGATGAAGGATTCTCCGAAC 796
|||||||||||||||| |||||||| |||||||||||||| | |||||||||| | ||||
Sbjct 646 TTCTTGATGGTTGTTTTGTTCTTGAGCTCTTTAGAGGAGCCGTTGAAGGATTCACGGAAC 705
Query 797 TAGGATATG-ATCGTAACGATCCAGTTTTCGCAATGCGAGGATCAATGCATTCGATTCAA 855
| ||||||| | ||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 706 TCGGATATGCA-CGTAACGATCCAGTTTTTGCGATGAGAGGATCAATGCATTCGATTCAA 764
Query 856 CGTGACATGGTAATGCTAGAAAATCAACTCCCTTTGTTTGTTCTCAACCGGTTATTAGAG 915
||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||
Sbjct 765 CGTGACATGGTAATGCTAGAAAATCAACTTCCTTTGTTTGTTTTAAACCGATTATTAGAG 824
Query 916 ATACAGCTTGGTA-AACGGCACCAAACCGGTTTAGTGTCGCGATTAGCAGTTCGGTTCTT 974
|||||||||||| || || ||||||||||||||||| | | |||||| |||||||||||
Sbjct 825 CTACAGCTTGGTACAA-GGAACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTT 883
Query 975 TGATCCACTAATGCCAACCGACGAGCCGTTGACCAAAAC---C--G--A---C--GA--- 1019
|||||||||||||||||| |||||||| ||||||||| | | | | | ||
Sbjct 884 TGATCCACTAATGCCAACGGACGAGCCATTGACCAAATCTGGCCAGTCAAAACTCGAGAA 943
Query 1020 CTCGCTGG-AACAAGATAAATTCTTTAACCCAATT-GCTGATAAGGACAAGGGTGAGTTG 1077
|||| ||| || | |||||| |||| ||||| || || |||| || | | | ||
Sbjct 944 CTCGTTGGCAAGA-GATAAAGCCTTTGACCCA-TTCGCCGATATGGG-A-GA---A-TTA 995
Query 1078 CACTGTCTAGATGTTTTCCGTCGAAATCTACTTCGGCCTTGTTCGAATCCGGAGCCAAGG 1137
|| |||||||||||||||||||||| | | || ||| || || | || |||||||| |||
Sbjct 996 CATTGTCTAGATGTTTTCCGTCGAAGTTTGCTCCGGTCTAGTCCTAAACCGGAGCCTAGG 1055
Query 1138 TTATCACGAATGAGATGGTCA--TGGAGAACTCGCGTG-G-CGGATAAGCGCCAACAACA 1193
||| || ||| ||||||||| | || ||| |||||| | |||| ||||||| |||||
Sbjct 1056 TTAACAAGAAAGAGATGGTCTCCTCGA-AACACGCGTGTGGCGGACAAGCGCCGGCAACA 1114
Query 1194 ACTGATACATTGCGTGACCGAACTAAGAGAAGCCGGTATTAAATTCAGGACGA-GGAAAA 1252
| |||||||||| ||||| ||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1115 ATTGATACATTGTGTGACTGAACTAAGAGAGGCCGGTATTAAATTCAGGA-GAAGGAAAA 1173
Query 1253 CCGACCGGTTTTGGGATATTCGATTCAAAAACGGTTATCTCGAGATACCAAAACTACTAA 1312
||||||||||||||||||||| |||||||||||||| ||| || ||||| | ||||| |
Sbjct 1174 CCGACCGGTTTTGGGATATTCAATTCAAAAACGGTTGTCTAGAAATACCGAGGCTACTTA 1233
Query 1313 TCCATGACGGTACCAAATCTCTCTTC-TCGAATCTTATAGCCTTCGAACAATGTCATATT 1371
|||||||||||||||||||||| ||| | |||||||||||| || || || || |||||
Sbjct 1234 TCCATGACGGTACCAAATCTCTTTTCCT-GAATCTTATAGCTTTTGAGCAGTGCCATATC 1292
Query 1372 GACTCGAGCAACGATATAACATCGTACATAATCTTTATGGATAATCTAATAGATTCGTCG 1431
|| || || || || |||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 1293 GATTCCAGTAATGACATAACATCCTACATAATCTTCATGGACAATCTAATAGATTC-TCA 1351
Query 1432 -GAAGATGTTAGGTATTTGCATTATTGTGGTATCATCGAACATTGGTTAGGGAATGATTA 1490
||||||||||| || || || |||||||||||||||||||||||| |||||| ||||
Sbjct 1352 TGAAGATGTTAGCTACTTACACTATTGTGGTATCATCGAACATTGGCTAGGGAGCGATTC 1411
Query 1491 TGAAGTTGCGGATTTGTTCAACCGGTTATGTCAAGAAGTGGCT-TTCGACCCCCAAAATA 1549
|||||| || ||||| |||||||| |||||||||||||| | | |||||| || || |||
Sbjct 1412 TGAAGTCGCAGATTTATTCAACCGTTTATGTCAAGAAGTTG-TATTCGACACCGAAGATA 1470
Query 1550 GTTATTTGTCACAATTGTCGAATAAAGTTGATCGGAATTAT-AGCCGAAAGTGGAATGTT 1608
| ||| | || | || |||| | | ||| | || |||| | | || |||||||| |
Sbjct 1471 GCTATCTATCTCGGTTATCGATTGAGGTTAACCGTTATTACGATCATAA-GTGGAATGCT 1529
Query 1609 CTGAAGG-CGATCTTA-AAACACAAGTACTTCAATAATCCTTGGGCA-TACTTCTCtttt 1665
|| ||| | | ||| ||||| ||||||||||||||||| |||||| | || |||||
Sbjct 1530 -TGGAGGGCTA-CTTTGAAACATAAGTACTTCAATAATCCATGGGCAATTGTT-TCTTTC 1586
Query 1666 tttGCTGCTCTTGTCCTGCTAGTTCTCACGTTATTTCAGAGTTTCTTTACTGCT-TATC- 1723
| |||||| || | || ||||| ||||| || | ||| ||||| || || ||| |||
Sbjct 1587 TGTGCTGCAGTTATTCTACTAGTCCTCACTTTCTCTCAAAGTTT-TT-AC-GCTGTATAT 1643
Query 1724 -CTTATTTTAACCCACCTTCTT 1744
|||||| ||| ||||||||||
Sbjct 1644 GCTTATTATAAACCACCTTCTT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5