BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50140.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866 1358 0.0
Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1 1098 0.0
Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1 931 0.0
Ahg485373 jgi|Araly1|485373|fgenesh2_kg.5__1365__AT3G50150.1 496 3e-139
Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137 449 2e-125
> Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866
Length=1695
Score = 1358 bits (735), Expect = 0.0
Identities = 1222/1454 (84%), Gaps = 45/1454 (3%)
Strand=Plus/Plus
Query 186 ATGTTGACCTGGTACTTCCTCACCTTCATGATGCGCCAAAAACTCCA-AACCCGAAACCA 244
|||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||| |
Sbjct 262 ATGTTGACATGGTACTTACTCACCCTCATGATGCGCCAAAAACTCCATAA-CCGAAACAA 320
Query 245 ACAACCCGAAGAGACACG-GGAAGAATGGGTGATTTGGATCAAAGACAAGATGGAGCAAG 303
|||||||||||||||||| || |||||||||||| | |||| |||||||||||||||||
Sbjct 321 ACAACCCGAAGAGACACGAGG-AGAATGGGTGATCTCAATCAGAGACAAGATGGAGCAAG 379
Query 304 TAATGAGAGACGCCGCCACAACTAGCTGGGACAAGATCTGTATCTACAGAGTTCCACTCT 363
| ||||| | |||||||||||| ||||||||| | ||||||||||||||||||| |
Sbjct 380 CGCTTAGAGAAGACGCCACAACTAGTTGGGACAAGCTATGTATCTACAGAGTTCCACAAT 439
Query 364 CCCTT-aaaaaaaGCGACAAGAATTCTTACTTCCCTCAAG-CAGTCTCGCTTGGTCCGTA 421
|||| || | || | ||||||| || || ||||||| || | ||||| ||||||||||
Sbjct 440 ACCTTCAAGAGAA-CAACAAGAAGTCCTATTTCCCTC-AGACCGTCTCACTTGGTCCGTT 497
Query 422 CCACCATGGGGACGAACATCTCCGACCCATGGACTATCACAAATGGCGTGCGGTCAATAT 481
|||||||| || ||||||||| |||||||||| |||||| |||||||| ||||||||
Sbjct 498 TCACCATGGCAACAAACATCTCCTACCCATGGACCGTCACAAGTGGCGTGCAGTCAATAT 557
Query 482 GGTCATGAAACGTACCAAGCAAGGCATCGAAATGTATATTGACGCCATGAAAGAGCTCGA 541
||||||| ||||||||| || | ||| ||||||||||||||||||||||||||||| ||
Sbjct 558 GGTCATGGCACGTACCAAACACGACATTGAAATGTATATTGACGCCATGAAAGAGCTTGA 617
Query 542 AGAGAGGGCTCGTGCTTGCTACGAAGGTCCTATTGGTTTGAGCAGTAACAAGTTCACCCA 601
||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||| |
Sbjct 618 AGACAGGGCTCGTGCTTGCTACGAAGGTCCTATAGATTTGAGCAGCAACAAGTTCTGTGA 677
Query 602 AATGCTAGTTCTTGATGGCTGTTTTGTTCTCGATCTCTTCAGAGGAGCCT-ATGAAGGAT 660
|||| | ||||||||||| ||||| |||||||| ||||||||||||| || |||||||||
Sbjct 678 AATGTTGGTTCTTGATGGTTGTTTCGTTCTCGAGCTCTTCAGAGGAG-CTGATGAAGGAT 736
Query 661 TCTCGAAACTTGGGTACGACCGAAACGATCCCGTTTTCGCGATGCGAGGATCTATGCATT 720
||||| |||| || || || || |||||||| |||||||| ||||||||||| |||||||
Sbjct 737 TCTCGGAACTCGGATATGATCGTAACGATCCAGTTTTCGCAATGCGAGGATCAATGCATT 796
Query 721 CGATTCGACGTGACATGCTAATGCTGGAAAATCAACTTCCTTTGTTTG-TCTTAAACCGG 779
|||||| |||||||||| ||||||| |||||||||||||||||||| | || | ||||||
Sbjct 797 CGATTCAACGTGACATGGTAATGCTAGAAAATCAACTTCCTTTGTTCGTTC-TCAACCGG 855
Query 780 TTATTAGAGCTACAACTCGGTAC-ACAATACCAAACCGGTTTAGTGGCACAATTAGCGGT 838
||| ||||| |||| || ||| | || ||||||||||||||||||| |||||||| ||
Sbjct 856 TTACTAGAGATACAGCTTGGT-CAACGGCACCAAACCGGTTTAGTGGCGCAATTAGCAGT 914
Query 839 TCGGTTCTTCAATCCGTTGATGCCAACTTAT-ATGTC-ATCAACCAAAATCGAGAACTCC 896
|||||||| |||| | ||||| || || | | | | ||||||| ||| ||||
Sbjct 915 ACGGTTCTTTGATCCACTAATGCCTACCGATGA-G-CTGTTGACCAAAACCGACAACT-- 970
Query 897 CA-AGAAAACAACAATAAATTCTTTAACCCAATTGCTGACAAGGAGAAGGAAGAGTTGCA 955
|| | || || |||||||||||||||| ||||| || ||||| |||| |||||||||
Sbjct 971 CATTG-GAA-AATGATAAATTCTTTAACCCGATTGCCGATAAGGACAAGGGAGAGTTGCA 1028
Query 956 TTGTCTGGATGTTTTCCGTCGAAGTCTGCTCCAGCCTAG-TCTAAAACCGGACCCGAGGT 1014
|||||| |||||||||||||||| ||| || | |||| | || |||||||| |||||||
Sbjct 1029 TTGTCTAGATGTTTTCCGTCGAAATCTACTTCGGCCTTGTTC-GAAACCGGAGCCGAGGT 1087
Query 1015 TATCGCGGAGTAGATGGTCCAGG-AAAC-CGCTGGTGGCGGACAAGCGCCAACAACAACT 1072
|||| | || |||||||| || |||| || | |||||||| |||||||||||||||||
Sbjct 1088 TATCAAGAAGGAGATGGTCGTGGAAAACTCG-T-GTGGCGGATAAGCGCCAACAACAACT 1145
Query 1073 -ACTACATTGCGTGACAGAACTAAGAGAAGCCGGTATAAAATTCA-AAAGAAGAAAATCT 1130
| ||||||||||||| |||||||||||||| ||||| ||||||| || || ||||| |
Sbjct 1146 GA-TACATTGCGTGACCGAACTAAGAGAAGCTGGTATTAAATTCAGAAGGAGGAAAA-CC 1203
Query 1131 GACCGGTTTTGGGATATTCA-ATTCAAAAACGGTTGTCTAGAAATACCAAAATTACTTAT 1189
|||||||||||||||||| | ||| ||||||||| ||| || ||||| ||| |||| ||
Sbjct 1204 GACCGGTTTTGGGATATT-AGGTTCGAAAACGGTTATCTCGAGATACCTAAACTACTAAT 1262
Query 1190 CCATGATGGTACCAAGTCTCTTTTCTCAAATCTTATAGCTTACGAGCAGTGCCATATCGA 1249
|||||| |||||||| ||||| ||||| ||||||||||||| ||| ||||| ||||| ||
Sbjct 1263 CCATGACGGTACCAAATCTCTCTTCTCGAATCTTATAGCTTTCGAACAGTGTCATATTGA 1322
Query 1250 TTC-AACGAACGACATAACATCCTACATTATCTTCATGGACAATCTAATAGATTCTGCTG 1308
|| | | ||||| |||||||| ||||| ||||| ||||| ||||||||||||||| | |
Sbjct 1323 CTCGAGC-AACGATATAACATCATACATAATCTTTATGGATAATCTAATAGATTCTCCAG 1381
Query 1309 AAGATATTAGGTATTTGCATTACTATGATATCATCGAGCACTGGTTAGGAAATGATTCA- 1367
||||| |||| ||||||||||| | || ||||||||| || |||||||||||||||| |
Sbjct 1382 AAGATGTTAGTTATTTGCATTATTGTGGTATCATCGAACATTGGTTAGGAAATGATT-AT 1440
Query 1368 GAAGTTGCTGATGTCTTCAACCGGCTATGTCAAGAAGTGGCTTTCGACCTCGAAAATACT 1427
|||||||| ||| | |||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 1441 GAAGTTGCGGATTTGTTCAACCGGCTATGTCAAGAAGTGGCTTTCGACCCCCAAAATAGT 1500
Query 1428 TACTTATCTG-AATTGTCAAATAAGGTGGACCGTTATTATAACCGAAAGTGGAATGTTCT 1486
|| ||||| | || |||| ||||| || || || |||||| ||| ||||||||||||||
Sbjct 1501 TATTTATC-GCAACTGTCGAATAAAGTTGATCGGAATTATAGCCGCAAGTGGAATGTTCT 1559
Query 1487 GAAGGCAACCTTGAAACACAAGTACTTTAGTAATCCTTGGGCATATTTCTCTTTCTTTGC 1546
|||||| | ||| |||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1560 GAAGGCGATCTTAAAACACAAGTACTTCAATAATCCTTGGGCATATTTCTCTTTTTTTGC 1619
Query 1547 GGCAGTTATTCTGCTACTTCTCACATTATTTCAGAGCTTTTTT-ACTAG-TTATCCTTAT 1604
||| || | |||||| ||||||| ||||||||||| |||||| ||| | ||||||||||
Sbjct 1620 TGCACTTGTCCTGCTATTTCTCACGTTATTTCAGAG-TTTTTTCACT-GCTTATCCTTAT 1677
Query 1605 TTTAAGCCACCTTC 1618
||| | ||||||||
Sbjct 1678 TTTTACCCACCTTC 1691
> Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1
Length=1463
Score = 1098 bits (594), Expect = 0.0
Identities = 736/800 (92%), Gaps = 28/800 (4%)
Strand=Plus/Plus
Query 309 AGAGACGCCGCCACAACTAGCTGGGACAAGATCTGTATCTACAGAGTTCCACTCTCCCTT 368
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 269 AGAGACGACGCCACAACTAGCTGGGACAAGCTTTGTATCTACAGAGTTCCACTCTCCCTT 328
Query 369 -aaaaaaaGCGACAAGAATTCTTACTTCCCTCAAGCAGTCTCGCTTGGTCCGTACCACCA 427
| ||||| |||||| || || |||||||||||| | ||||| |||||||||
Sbjct 329 CAGAAAAA-CGACAATAACTCCTACTTCCCTCAAACCGTCTCTCTTGGTCCG-------- 379
Query 428 TGGGGACGAACATCTCCGACCCATGGACTATCACAAATGGCGTGCGGTCAATATGGTCAT 487
| | || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 380 T----------A---CC-A-CCATGGACTATCACAAATGGCGTGCGGTCAATATGGTCAT 424
Query 488 GAAACGTACCAAGCAAGGCATCGAAATGTATATTGACGCCATGAAAGAGCTCGAAGAGAG 547
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 425 GAAACGTACCAAGCAAGGCATCGGATTGTATATTGACGCCATGAAAGAGCTCGAAGAGAG 484
Query 548 GGCTCGTGCTTGCTACGAAGGTCCTATTGGTTTGAGCAGTAACAAGTTCACCCAAATGCT 607
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 485 GGCTCGTTCTTGCTACAAAGGTCGTATTGGTTTGAGCAGTAACAAGTTCACCCAAATGCT 544
Query 608 AGTTCTTGATGGCTGTTTTGTTCTCGATCTCTTCAGAGGAGCCTATGAAGGATTCTCGAA 667
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 545 AGTTCTTGATGGTTGTTTTGTTCTCGATCTCTTCAGAGGAGCCTATGAAGGATTCTTGAA 604
Query 668 ACTTGGGTACGACCGAAACGATCCCGTTTTCGCGATGCGAGGATCTATGCATTCGATTCG 727
|||||| ||| | ||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 605 ACTTGGATACAATCGAAACGATCCCGTTTTTGCCATGCGAGGATCGATGCATTCGATTCG 664
Query 728 ACGTGACATGCTAATGCTGGAAAATCAACTTCCTTTGTTTGTCTTAAACCGGTTATTAGA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ACGTGACATGCTAATGCTGGAAAATCAACTTCCTTTGTTTGTCTTAAACCGGTTATTAGA 724
Query 788 GCTACAACTCGGTACACAATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GCTACAACTCGGTACACAATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTT 784
Query 848 CAATCCGTTGATGCCAACTTATATGTCATCAACCAAAATCGAGAACTCCCAAGAAAACAA 907
|||||||||||||||||| |||||| ||||||||||||| || ||||| |||||||||||
Sbjct 785 CAATCCGTTGATGCCAACCTATATGCCATCAACCAAAATTGACAACTCGCAAGAAAACAA 844
Query 908 CAATAAATTCTTTAACCCAATTGCTGACAAGGAGAAGGAAGAGTTGCATTGTCTGGATGT 967
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 845 ---TAAATTCTTTAACCCAATTGCTGACAAGGAGAAGGAAGAGTTGCACTGTCTGGATGT 901
Query 968 TTTCCGTCGAAGTCTGCTCCAGCCTAGTCTAAAACCGGACCCGAGGTTATCGCGGAGTAG 1027
|||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||
Sbjct 902 TTTCCGTCGAAGTCTGCTCCAGCCTAGTCTGAAACCGGAGCCAAGGTTATCGCGAAGTAG 961
Query 1028 ATGGTCCAGGAAACCGCTGGTGGCGGACAAGCGCCAACAACAACTACTACATTGCGTGAC 1087
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 962 ATGGTCTAGGAAACCGCTTGTGGCGGACAAGCGCCAACAACAACTACTACATTGCGTGAC 1021
Query 1088 AGAACTAAGAGAAGCCGGTA 1107
|||||||||||| |||||||
Sbjct 1022 AGAACTAAGAGAGGCCGGTA 1041
Score = 717 bits (388), Expect = 0.0
Identities = 412/424 (97%), Gaps = 0/424 (0%)
Strand=Plus/Plus
Query 1197 GGTACCAAGTCTCTTTTCTCAAATCTTATAGCTTACGAGCAGTGCCATATCGATTCAACG 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GGTACCAAGTCTCTTTTCTCAAATCTTATAGCTTACGAGCAGTGCCATATCGATTCAACC 1097
Query 1257 AACGACATAACATCCTACATTATCTTCATGGACAATCTAATAGATTCTGCTGAAGATATT 1316
||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1098 AACGATATAACATCCTACATAATTTTCATGGACAATCTAATAGATTCTGCTGACGATATT 1157
Query 1317 AGGTATTTGCATTACTATGATATCATCGAGCACTGGTTAGGAAATGATTCAGAAGTTGCT 1376
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1158 AGGTATTTGCACTACTATGATATCATCGAGCACTGGTTAGGAAATGATTCGGAAGTTGCT 1217
Query 1377 GATGTCTTCAACCGGCTATGTCAAGAAGTGGCTTTCGACCTCGAAAATACTTACTTATCT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1218 GATGTCTTCAACCGGCTATGTCAAGAAGTGGCTTTCGACCTCGAAAATACTTATTTATCT 1277
Query 1437 GAATTGTCAAATAAGGTGGACCGTTATTATAACCGAAAGTGGAATGTTCTGAAGGCAACC 1496
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1278 GAATTGTCAAATAAGGTGGACCGTTTTTATAACCGAAAGTGGAATGTTCTGAAGGCAACC 1337
Query 1497 TTGAAACACAAGTACTTTAGTAATCCTTGGGCATATTTCTCTTTCTTTGCGGCAGTTATT 1556
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1338 TTGAAACACAAGTACTTCAGTAATCCTTGGGCATATTTCTCTTTCTTTGCAGCAGTTATT 1397
Query 1557 CTGCTACTTCTCACATTATTTCAGAGCTTTTTTACTAGTTATCCTTATTTTAAGCCACCT 1616
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1398 CTGCTACTTCTCACATTATTTCAGAGTTTTTTTACTAGTTATCCTTATTTTAAGCCACCT 1457
Query 1617 TCTT 1620
||||
Sbjct 1458 TCTT 1461
Score = 300 bits (162), Expect = 3e-80
Identities = 238/273 (87%), Gaps = 11/273 (4%)
Strand=Plus/Plus
Query 1 AAATGGCAACTCCTAGTAAACGACGACCACCACCTCCACCGCCGCCGCCTCCTCGTCTAT 60
||||||| | || ||||||||||||||||||||||||| || || || || || |
Sbjct 1 AAATGGCCATTCTTAGTAAACGACGACCACCACCTCCA---CCACCACCACCGCGGC--- 54
Query 61 TGGTGCTGCCACCACTTCCACCGCCACCACCACCGCCGCCGCCCCAGCTACCATTTGGAC 120
| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 55 --CT-CTTCCACCACTTCCGCCGCCACCACCACCCCCGCCGCCCCAGCTACCATTTGGAC 111
Query 121 CGAAGCTTCCTTTCCCTCATATTATCATAAGAAGAAAAGCAAGAAGAAACTATCAACTAC 180
|||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 112 CGAATCTTCCTTTACCTCATATTATCATAAGAAGGAAAGGAAGAAGAAACTATCAACTAC 171
Query 181 GACCGATGTTGACCTGGTACTTCCTCACCTTCATGATGCGC-CAAAAACTCCAAACCCGA 239
||| ||||||||||| ||||||||| || ||||| |||||| ||||| | ||||||| |
Sbjct 172 GACAGATGTTGACCTTGTACTTCCTAACATTCATAATGCGCAAAAAAAAT-CAAACCCAA 230
Query 240 AACCAACAACCCGAAGAGACACGGGAAGAATGG 272
|||||||||||||||||||||||||||||||||
Sbjct 231 AACCAACAACCCGAAGAGACACGGGAAGAATGG 263
> Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1
Length=1687
Score = 931 bits (504), Expect = 0.0
Identities = 1125/1413 (80%), Gaps = 89/1413 (6%)
Strand=Plus/Plus
Query 259 CACGGGAAGAATGGGTGATTTGGATCAAAGACAAGATGGAGCAAG-TAATGAGAGACGCC 317
|||| || || |||||||| | |||| |||||| | || |||| || |||||||
Sbjct 295 CACGAGACGATTGGGTGATCTCCATCACTGACAAGCTCGAACAAGCGCAT-AGAGACGAT 353
Query 318 GCCAC-A-ACTAGCT-GGGACAAGATCTGTATCTACAGAGTTCCACT-CTCCCTT-aaaa 372
| ||| | ||| || |||| ||| |||||||||||||||||||| | | |||| || |
Sbjct 354 GACACGACACT--CTGGGGA-AAGCTCTGTATCTACAGAGTTCCA-TATTACCTTCAAGA 409
Query 373 aaaGCGACAAGAATTCTTACTTCCCTCAAG-CAGTCTCGCTTGGTCCGTACCACCATGGG 431
||| |||||| || || || ||||||| || | |||||||||||||||||||| || ||
Sbjct 410 AAA-CGACAACAAATCGTATTTCCCTC-AGACCGTCTCGCTTGGTCCGTACCATCACGGT 467
Query 432 GACGAACATCTCCGACCCATGGACTATCACAAATGGCGTGCGGTCAATATG-GTCATGAA 490
| ||| |||||| |||||| |||||||||||||||||||| || | ||| ||||
Sbjct 468 AAAAAACGTCTCCGGTATATGGACCGTCACAAATGGCGTGCGGTCAGTA-GAGTCTTGAA 526
Query 491 ACGTACCAAGCAAGGCATCGAAATGTATATTGACGCCATGAAAGAGCTCGAAGAGAGGGC 550
|||||| || |||||||| |||||||||| |||||||||| |||||| || || | |||
Sbjct 527 ACGTACGAACCAAGGCATTAAAATGTATATAGACGCCATGAGAGAGCTAGAGGAAAAGGC 586
Query 551 TCGTGCTTGCTACGAAGGT-CCTATTGGTTTGAGCAGTAAC-AAGTTCACCCAAATGCTA 608
| | ||||| ||||||||| ||| | |||||| ||||||| || || | |||||||
Sbjct 587 TAGAGCTTGTTACGAAGGTCCCT-TAAGTTTGAACAGTAACGAA-TTTATAGAAATGCTT 644
Query 609 GTTCTTGATGGCTGTTTTGTTCTCGATCTCTTCAGAGGAGCC-TATGAAGGATTCTCGAA 667
||||||||||| ||||||||||| || ||||| ||||||||| | |||||||||| || |
Sbjct 645 GTTCTTGATGGTTGTTTTGTTCTTGAGCTCTTTAGAGGAGCCGT-TGAAGGATTCACGGA 703
Query 668 ACTTGGGTACGAC-CGAAACGATCCCGTTTTCGCGATGCGAGGATCTATGCATTCGATTC 726
||| || || | | || |||||||| ||||| |||||| ||||||| |||||||||||||
Sbjct 704 ACTCGGATATG-CACGTAACGATCCAGTTTTTGCGATGAGAGGATCAATGCATTCGATTC 762
Query 727 GACGTGACATGCTAATGCTGGAAAATCAACTTCCTTTGTTTGTCTTAAACCGGTTATTAG 786
|||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 763 AACGTGACATGGTAATGCTAGAAAATCAACTTCCTTTGTTTGTTTTAAACCGATTATTAG 822
Query 787 AGCTACAACTCGGTAC-ACAATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTC 845
||||||| || ||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGCTACAGCTTGGTACAAGGA-ACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTC 881
Query 846 TTCAATCCGTTGATGCCAACTTA-TATGTCATCAACCAAAATC--G--AG----AACTC- 895
|| |||| | |||||||| | | | ||| ||| ||||| | || |||||
Sbjct 882 TTTGATCCACTAATGCCAACGGACGA-GCCATTGACC-AAATCTGGCCAGTCAAAACTCG 939
Query 896 CCAA---GAAAACAACA-ATAAATTCTTTAACCCAATTGCTGACAAGGAGAAGGAAGAGT 951
|| | ||| | ||||| |||| |||| ||| | | | || | || ||| |
Sbjct 940 AGAACTCGTTGGCAAGAGATAAAGCCTTTGACCC-ATT-C-G-C--CGATATGGGAGAAT 993
Query 952 TGCATTGTCTGGATGTTTTCCGTCGAAGTCTGCTCCAGCCTAGT-CTAAAACCGGACCCG 1010
| |||||||| |||||||||||||||||| |||||| | ||||| || |||||||| ||
Sbjct 994 TACATTGTCTAGATGTTTTCCGTCGAAGTTTGCTCCGGTCTAGTCCT-AAACCGGAGCCT 1052
Query 1011 AGGTTATCGCG-GAGTAGATGG--TCCAGGAAAC-CGCTG-GTGGCGGACAAGCGCCAAC 1065
|||||| | | || |||||| ||| ||||| ||| | |||||||||||||||| |
Sbjct 1053 AGGTTAACAAGAAAG-AGATGGTCTCCTCGAAACACGC-GTGTGGCGGACAAGCGCCGGC 1110
Query 1066 AACAACT-ACTACATTGCGTGACAGAACTAAGAGAAGCCGGTATAAAATTCAAAAGAA-G 1123
||||| | | ||||||| ||||| ||||||||||| |||||||| ||||||| |||| |
Sbjct 1111 AACAATTGA-TACATTGTGTGACTGAACTAAGAGAGGCCGGTATTAAATTCAGGAGAAGG 1169
Query 1124 AAAATCTGACCGGTTTTGGGATATTCAATTCAAAAACGGTTGTCTAGAAATACCAAAATT 1183
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1170 AAAA-CCGACCGGTTTTGGGATATTCAATTCAAAAACGGTTGTCTAGAAATACCGAGGCT 1228
Query 1184 ACTTATCCATGATGGTACCAAGTCTCTTTTC-TCAAATCTTATAGCTTACGAGCAGTGCC 1242
|||||||||||| |||||||| ||||||||| | || ||||||||||| ||||||||||
Sbjct 1229 ACTTATCCATGACGGTACCAAATCTCTTTTCCTGAA-TCTTATAGCTTTTGAGCAGTGCC 1287
Query 1243 ATATCGATTCAACG-AACGACATAACATCCTACATTATCTTCATGGACAATCTAATAGAT 1301
|||||||||| | | || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1288 ATATCGATTCCA-GTAATGACATAACATCCTACATAATCTTCATGGACAATCTAATAGAT 1346
Query 1302 TCTGC-TGAAGATATTAGGTATTTGCATTACTATGATATCATCGAGCACTGGTTAGGAAA 1360
||| | ||||||| |||| || || || || | || ||||||||| || ||| |||| |
Sbjct 1347 TCT-CATGAAGATGTTAGCTACTTACACTATTGTGGTATCATCGAACATTGGCTAGGGAG 1405
Query 1361 TGATTCAGAAGTTGCTGATGTCTTCAACCGGCTATGTCAAGAAGTGGCT-TTCGAC-CTC 1418
||||| ||||| || ||| | |||||||| ||||||||||||| | | |||||| | |
Sbjct 1406 CGATTCTGAAGTCGCAGATTTATTCAACCGTTTATGTCAAGAAGTTG-TATTCGACAC-C 1463
Query 1419 GAAAATA-CT-TACTTATCT-GAATTGTCAAATAAGGTGGACCGTTATTATAACCGA-AA 1474
||| ||| || | || |||| | || || | | |||| |||||||||| | | | ||
Sbjct 1464 GAAGATAGCTAT-CT-ATCTCGG-TTATCGATTGAGGTTAACCGTTATTACGATC-ATAA 1519
Query 1475 GTGGAATGTTCTGAAGG-CAACCTTGAAACACAAGTACTTTAGTAATCCTTGGGCATATT 1533
|||||||| | || ||| | || |||||||| |||||||| | |||||| |||||| |||
Sbjct 1520 GTGGAATGCT-TGGAGGGCTACTTTGAAACATAAGTACTTCAATAATCCATGGGCA-ATT 1577
Query 1534 -TCTCTTTCTTTGCGGCAGTTATTCTGCTACTTCTCACATTATTTCAGAGCTTTTTTAC- 1591
| ||||||| ||| ||||||||||| ||| | ||||| || | ||| || ||||| ||
Sbjct 1578 GTTTCTTTCTGTGCTGCAGTTATTCTACTAGTCCTCACTTTCTCTCAAAG-TTTTT-ACG 1635
Query 1592 -TAGT-TATCCTTATTTTAAGCCACCTTCTTAA 1622
| || ||| |||||| ||| ||||||||||||
Sbjct 1636 CT-GTATATGCTTATTATAAACCACCTTCTTAA 1667
> Ahg485373 jgi|Araly1|485373|fgenesh2_kg.5__1365__AT3G50150.1
Length=1586
Score = 496 bits (268), Expect = 3e-139
Identities = 504/614 (82%), Gaps = 31/614 (5%)
Strand=Plus/Plus
Query 254 AGAGACACGGGAAGAATGGGTGATTTGGATCAAAGACAAGATGGAGCAAGTAATGAGAGA 313
||||||||| |||||||||||||| | |||||| |||||||||||||||| | | ||| |
Sbjct 207 AGAGACACGAGAAGAATGGGTGATCTCGATCAAGGACAAGATGGAGCAAGCACTTAGATA 266
Query 314 CGCCGCCACAACTAGCTGGGACAAGATCTGTATCTACAGAGTTCCAC-TCTCCCTT-aaa 371
|| || |||| | ||||||| ||| ||||||||||||||||||| | | | ||| ||
Sbjct 267 CGATGCAACAAATTGCTGGGAAAAGCTCTGTATCTACAGAGTTCC-CTTTTATCTTCAAG 325
Query 372 aaaaGCGACAAGAATTCTTACTTCCCTCAAGCAGTCTCGCTTGGTCCGTACCACCATGGG 431
| || ||||||||| |||||||| |||||| | ||||| ||||||| |||||||||||
Sbjct 326 AGAA-CGACAAGAAGTCTTACTTACCTCAAACTGTCTCTATTGGTCCATACCACCATGGC 384
Query 432 GACGAACATCTCC-GACCCATGGA-CTATCACAAATGGCGTGCGGTCAATATGGTCATGA 489
| |||||||||| | |||||||| | ||||| ||||| || |||||||||||||||
Sbjct 385 AAGGAACATCTCCTG-CCCATGGAGC-GCCACAAGTGGCGGGCCGTCAATATGGTCATGG 442
Query 490 AACGTACCAAGCA-AGGCATCGAAATGTATATTGACGCCATGAAAGAGCTCGAAGAG-AG 547
|||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 443 CACGTACCAAGCACA-ACATCGAAATGTATATTGACGCCATGAAAGAGCTCGAGGAGGAG 501
Query 548 GGCTCGTGCTTGCTACGAAGGTCCTATTGGTTTGA-GCA--GTAACAAGTTCACCCAAAT 604
| |||||||||||||| ||||||| |||| | ||| | | |||| |||||||| ||||
Sbjct 502 G-CTCGTGCTTGCTACCAAGGTCCCATTGATATGAAGAATAGTAATGAGTTCACCGAAAT 560
Query 605 GCTAGTTCTTGATGGCTGTTTTGTTCTCGATCTCTTCAGAGGAGCCTA--TGAAGGATTC 662
||| ||||||||||||||||| |||||||| ||||||| ||| | || | ||||||||
Sbjct 561 GCTTGTTCTTGATGGCTGTTTCGTTCTCGAGCTCTTCA-AGG-GAATAGCTCAAGGATTC 618
Query 663 TC-GAAACTTGGGTACG-ACCGAAACGATCCCGTTTTCGCGATGCGAGGATCT-ATGCAT 719
| |||| | || || | || ||||||||| |||||||| | |||||| | | ||||||
Sbjct 619 -CAGAAAATCGGATATGCACA-AAACGATCCGGTTTTCGCTAAGCGAGGGT-TGATGCAT 675
Query 720 TCGATTCGACGTGACATGCTAATGCTGGAAAATCAACTTCCTTTGTTTGT-CTTAAACCG 778
||||||| |||||||||| ||||||||||||| ||||||||| |||| | || | |||
Sbjct 676 TCGATTCAACGTGACATGATAATGCTGGAAAACCAACTTCCTCTGTTCATTCTCGA-CCG 734
Query 779 GTTATTAGAGCTACAACTCGGTACACA-ATACCAAACCGGTTTAGTGGCACAA-TTAGCG 836
|||||||| |||||| | |||||||| | ||||||||||| |||||||| | || ||
Sbjct 735 GTTATTAGGGCTACAGCCCGGTACACCGA-ACCAAACCGGTATAGTGGCAGATGTT-GCT 792
Query 837 GTTCGGTTCTTCAA 850
|||| |||||||||
Sbjct 793 GTTCAGTTCTTCAA 806
Score = 436 bits (236), Expect = 2e-121
Identities = 484/599 (81%), Gaps = 35/599 (6%)
Strand=Plus/Plus
Query 1048 TGGCGGACAAGCGCCAACAACAACT-ACTACATTGCGTGACAGAACTAAGAGAAGCCGGT 1106
||| |||||| | ||||||||||| | ||||||||||||||||||||||||| || |||
Sbjct 983 TGGTGGACAA--G-CAACAACAACTGA-TACATTGCGTGACAGAACTAAGAGACGCTGGT 1038
Query 1107 ATAAAATTCAAAAGAAGAA-AATCTGACCGGTTTTGGGATATTCAATTCAAAAACGGTTG 1165
| || |||| |||| || || | | || | ||||||||||| |||||||||||||||
Sbjct 1039 GTTAAGTTCATGAGAA-AACAAACCGGCCAGCTTTGGGATATTGAATTCAAAAACGGTTA 1097
Query 1166 TCTAGAA-ATACCAAAATTACTTATCCATGATGGTACCAAGTCTCTTTTCTCAAATCTTA 1224
|||| || ||||| ||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1098 TCTA-AAGATACCCAAACTACTAATCCATGACGGTACCAAGTCTCTTTTCTCAAATCTTA 1156
Query 1225 TAGCTTACGAGCAGTGCCATAT-CGATTCAA-CGAACGACATAACATCCTACATTATCTT 1282
|||||| |||||||||||||| | | |||| | ||| |||||||||||||||| |||||
Sbjct 1157 TAGCTTTCGAGCAGTGCCATACAC-AGTCAAGC-AACAACATAACATCCTACATAATCTT 1214
Query 1283 CATGGACAATCTAATAGATTCTGCTGAAGATATTAGGTATTTGCATTACT-ATGATATCA 1341
|||||| ||||||||| | ||| || ||||| |||| || ||||| | | | | |||||
Sbjct 1215 CATGGATAATCTAATAAACTCTTCTCAAGATGTTAGCTACTTGCACCA-TGACGGTATCA 1273
Query 1342 TCGAGCACTGGTTAGGAAATGATTCAGAAGTTGCTGATGTCTTCAACCGGCTATGTCAAG 1401
| ||||| ||| |||| | |||||| |||||||| ||| | ||||||||| ||||| |||
Sbjct 1274 TTGAGCATTGGCTAGGGAGTGATTCTGAAGTTGCAGATTTGTTCAACCGGTTATGTAAAG 1333
Query 1402 AAGTGG--CTTTCGACCTCGAAA-ATACTTA-CTTATCTGAATTGTCAAAT-AAGGTGGA 1456
||| || |||| |||| | ||| || ||| || |||| ||||||| ||| | |
Sbjct 1334 AAG-GGATCTTT-GACC-CAAAAGATGGTTATCT-ATCTCAATTGTCTGGCGAAGTTA-A 1388
Query 1457 CCGTTATTATAACCGAAAGTGGAA-TGTTCTGAAGGCAACCTTGAA-ACACAAGTACTTT 1514
||||||||||| || |||||||| | || ||||||| ||||| || ||| ||||||||
Sbjct 1389 CCGTTATTATAGTCGTAAGTGGAACTCTT-TGAAGGCTACCTT-AAGACAAAAGTACTTC 1446
Query 1515 AGTAATCCTTGGGCATATTTCTCTTTCTTT-GCGGCAGTTATTCTGCTACTTCTCACATT 1573
| ||| ||||||||||||||||| || || || ||| || |||||||| |||| |||||
Sbjct 1447 AATAACCCTTGGGCATATTTCTCCTT-TTCAGCTGCACTTGTTCTGCTAATTCTTACATT 1505
Query 1574 ATTTCAGAGCTTTTTTACTAGT-TATCCTTATTTTAAGCCACCTTCTTAA-TTCTCATT 1630
||||| ||||| ||| || || ||| |||||| |||||||| ||||||| || |||||
Sbjct 1506 CTTTCAAAGCTTGTTTGCT-GTCTATGCTTATTATAAGCCACTTTCTTAACTT-TCATT 1562
> Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137
Length=1743
Score = 449 bits (243), Expect = 2e-125
Identities = 495/613 (81%), Gaps = 31/613 (5%)
Strand=Plus/Plus
Query 267 GAATGGGTGATTTGGATCAAAGACAAGATGGAGCAAGTA-ATGAGAGACGCCGCCACAAC 325
||||||||||| | || ||| |||| | || ||| | || ||||||| | || |||
Sbjct 436 GAATGGGTGATCTCAATGGAAGGCAAGCTCAAGGAAGCATAT-AGAGACGATGACAGAAC 494
Query 326 TAGCTGGGACAAGATCTGTATCTACAGAGTTCCAC-TCTCCCTTa-a-aaaaaGCGACAA 382
|||||||| |||| ||||||| |||| |||||||| | | || || | ||| ||||||
Sbjct 495 TAGCTGGGGCAAGCTCTGTATATACAAAGTTCCACAT-TACC-TACATGGAAA-CGACAA 551
Query 383 GAATTCTTACTTCCCTCAAG-CAGTCTCGCTTGGTCCGTACCACCATGGG-GACGAAC-A 439
||| || || ||||||| || | |||||||||||||| |||||||||||| ||| | | |
Sbjct 552 GAAGTCGTATTTCCCTC-AGACTGTCTCGCTTGGTCCATACCACCATGGGAGAC-AGCAA 609
Query 440 TCTCCGACCCATGGACTATCACAAATGGCGTGCGGTCAATATGGTCA-TGAAACGTACCA 498
| | | |||||| | |||||||||||||| |||| |||||| | |||||||||| |
Sbjct 610 ACACAG-TGCATGGAGTGCCACAAATGGCGTGCCGTCAGTATGGT-ACTGAAACGTACGA 667
Query 499 AGCAAGGCATCGAAATGTATATTGACGCCATGA-AAGAGCTCGAAGAGAGGGCTCGTGCT 557
| |||||||| ||| ||| | |||||||||||| || |||| ||||||| ||||||||||
Sbjct 668 ACCAAGGCATTGAAGTGTTTCTTGACGCCATGACAA-AGCTTGAAGAGAAGGCTCGTGCT 726
Query 558 TGCTACGAAGGTCCTATTGGTTT-GAGCAGTAACAAGTTCACCCAAATGCTAGTTCTTGA 616
|||||||||||||| |||| ||| || ||||||| |||||| ||||||| ||||||||
Sbjct 727 TGCTACGAAGGTCCCATTGTTTTGGA-CAGTAACGGGTTCACAGAAATGCTTGTTCTTGA 785
Query 617 TGGCTGTTTTGTTCTCGATCT-CTTCAGAGGAGCCTATGAAGGATTCTCGAAACTTGGGT 675
|||||| ||| ||||||| || || || ||||| | ||||||||||| |||||| || |
Sbjct 786 TGGCTGCTTTATTCTCGAGCTCCTCCA-AGGAGTCGCTGAAGGATTCTTGAAACTCGGAT 844
Query 676 ACGACCGA-AACGATCCCGTTTTCGCGATGCGAGGATCTATGCATTCGATTCGACGTGAC 734
| || | | |||||||| ||||||||| | |||||||| ||||||||||| | |||||||
Sbjct 845 ATGATC-ATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATACAACGTGAC 903
Query 735 ATGCTAATGCTGGAAAATCAACTTCCTTTGTTTGT-CTTAAACCGGTTATTAGAGCTACA 793
||| |||||||||||||||||||||||||||| || || || ||||||||||||| ||||
Sbjct 904 ATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAA-CCGGTTATTAGAGTTACA 962
Query 794 ACTCGGTACACA-ATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTCAATC 852
| || | |||| | || |||| |||||||||| | | |||| ||||||||||||| ||
Sbjct 963 GCCCGATTCACAGA-ACAAAACTGGTTTAGTGG-A-A-TTAGTGGTTCGGTTCTTCGTTC 1018
Query 853 CGTTGATGCCAAC 865
| | ||||||||
Sbjct 1019 CACTAATGCCAAC 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5