BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50150.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485373 jgi|Araly1|485373|fgenesh2_kg.5__1365__AT3G50150.1 2362 0.0
Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1 1038 0.0
Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866 508 4e-143
Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1 414 9e-115
Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1 359 4e-98
> Ahg485373 jgi|Araly1|485373|fgenesh2_kg.5__1365__AT3G50150.1
Length=1586
Score = 2362 bits (1279), Expect = 0.0
Identities = 1476/1572 (94%), Gaps = 10/1572 (1%)
Strand=Plus/Plus
Query 87 AAATCATGGTTTTGTTTTCCGATGGTCGCTCAACTTCCACCCACAAAAGGTACAGACGGT 146
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AAATCATGGTTTTGTTTTCGGATGGTCGCTCAACTTCCACCCACAAAAGGTACAGACGGT 79
Query 147 TGTCATGGTTCGTGCCAATCCACAGTTTCCATGAAATTACCAGACGTGATCTAGGCCAAA 206
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 80 TGTCATGGTTCGTGCCAATCCACAGTTTCCATGAAACTACCAGACGTGATCTAGGCCAAA 139
Query 207 ACTTGCACAACCACGTGGAGACTTACGTGGAGCCCAGTAAGATCGAAGTAAAAGAAGAAA 266
||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |
Sbjct 140 ACTTGCACAACCACGAGGAGACTTACGCGGAGCCCGGTAAGATCGAAGTAAAAGAAGAGA 199
Query 267 AGCCAAGAGAGACACGAGAAGAATGGGTGATCTCGATCAAGGACAAGATGGAGAAAGCAC 326
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 200 AGCCAAGAGAGACACGAGAAGAATGGGTGATCTCGATCAAGGACAAGATGGAGCAAGCAC 259
Query 327 TTAGTTACGACGCAACAAATAGCTGGGACAAGCTCTGTATCTACAGAGTT-CCTTTCTAT 385
|||| ||||| ||||||||| ||||||| ||||||||||||||||||||| ||||| |||
Sbjct 260 TTAGATACGATGCAACAAATTGCTGGGAAAAGCTCTGTATCTACAGAGTTCCCTTT-TAT 318
Query 386 CTTCAAGAGAACGACAAGAAGTCTTACTTACCTCAAACTGTCTCTATTGGTCCGTACCAC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 319 CTTCAAGAGAACGACAAGAAGTCTTACTTACCTCAAACTGTCTCTATTGGTCCATACCAC 378
Query 446 CATGGAAAGGTACACCT-CAGACCCATGGAGCGTCACAAATGGCGAGCGGTCAATATGAT 504
||||| |||| ||| || | | ||||||||||| ||||| ||||| || ||||||||| |
Sbjct 379 CATGGCAAGGAACATCTCCTG-CCCATGGAGCGCCACAAGTGGCGGGCCGTCAATATGGT 437
Query 505 CATGGCACGTACCAAGCACAACATTGAAATGTATATTGACGCCATGAAAGAGCTCGAGGA 564
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 438 CATGGCACGTACCAAGCACAACATCGAAATGTATATTGACGCCATGAAAGAGCTCGAGGA 497
Query 565 GGAGGCTCGTGCTTGCTACCAAGGTCCCATTGACATGAAGAATAGTAATGAGTTCACAGA 624
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 498 GGAGGCTCGTGCTTGCTACCAAGGTCCCATTGATATGAAGAATAGTAATGAGTTCACCGA 557
Query 625 AATGCTTGTTCTTGATGGTTGTTTCGTTCTCGAGCTCTTCAAGGGAACAATTCAAGGATT 684
|||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 558 AATGCTTGTTCTTGATGGCTGTTTCGTTCTCGAGCTCTTCAAGGGAATAGCTCAAGGATT 617
Query 685 CCAGAAAATTGGATATGCACGTAACGACCCGGTTTTCGCTAAGCGAGGATTGATGCATTC 744
||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 618 CCAGAAAATCGGATATGCACAAAACGATCCGGTTTTCGCTAAGCGAGGGTTGATGCATTC 677
Query 745 GATTCAACGTGACATGATAATGTTGGAAAACCAACTTCCTCTGTTCGTTCTCGACCGGTT 804
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 678 GATTCAACGTGACATGATAATGCTGGAAAACCAACTTCCTCTGTTCATTCTCGACCGGTT 737
Query 805 ATTAGGGCTACAAACCGGTACACCGAACCAAACGGGTATAGTGGCAGAAGTAGCTGTTCG 864
|||||||||||| ||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 738 ATTAGGGCTACAGCCCGGTACACCGAACCAAACCGGTATAGTGGCAGATGTTGCTGTTCA 797
Query 865 GTTCTTCAAAACACTAATGCCAACTAGCGAGGTGCTGACCAAATCAGAAAGATCGTTAGA 924
|||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||| ||
Sbjct 798 GTTCTTCAAAACACTAATGCCAACAAGCGAGGCGCTGACCAAATCAAAAAGCCCGTTGGA 857
Query 925 CTCGCAGGAAAAATCCGATGAATTGGGTGACAATGGCGGGTTGCACTGTTTGGATGTGTT 984
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 858 CTCGCAGGAAAAATCCGATGAACTGGCTGACAATGGCGGGTTGCACTGCTTGGATGTGTT 917
Query 985 CCATCGAAGTCTCATCCAATCTAGTGAGACAACTAATCAAGGGACTCCATATGAGGATAT 1044
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 918 CCATCGAAGTCTCATCCAATCTAGTGAGACAACGAATCGGGGGACTCCATATGAGGATAT 977
Query 1045 GAGCATGGTGGAAAAGCAACAACAATTGATACATTGCGTGACAGAACTAAGAGGCGCAGG 1104
||| |||||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 978 GAGGATGGTGGACAAGCAACAACAACTGATACATTGCGTGACAGAACTAAGAGACGCTGG 1037
Query 1105 TGTTAACTTCATGAGGAAAGAAACCGGCCAGCTTTGGGACATTGAATTCAAAAACGGTTA 1164
|||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1038 TGTTAAGTTCATGAGAAAACAAACCGGCCAGCTTTGGGATATTGAATTCAAAAACGGTTA 1097
Query 1165 TCTAAAGATACCGAAACTACTAATCCATGATGGTACCAAGTCTCTTTTCTCAAATCTTAT 1224
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1098 TCTAAAGATACCCAAACTACTAATCCATGACGGTACCAAGTCTCTTTTCTCAAATCTTAT 1157
Query 1225 TGCTTTCGAGCAGTGCCATACACAATCAAGCAACAACATAACATCCTACATAATCTTCAT 1284
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1158 AGCTTTCGAGCAGTGCCATACACAGTCAAGCAACAACATAACATCCTACATAATCTTCAT 1217
Query 1285 GGATAATCTAATAAACTCTTCTCAAGATGTTAGCTACTTGCACCACGACGGTATTATTGA 1344
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1218 GGATAATCTAATAAACTCTTCTCAAGATGTTAGCTACTTGCACCATGACGGTATCATTGA 1277
Query 1345 GCATTGGTTAGGGAGTGATTCTGAAGTTGCAGATTTGTTCAACCGGTTATGTAAAGAAGT 1404
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 GCATTGGCTAGGGAGTGATTCTGAAGTTGCAGATTTGTTCAACCGGTTATGTAAAGAAGG 1337
Query 1405 GATCTTTGATCCAAAAGATGGGTATCTATCTCAACTGTCTCGTGAAGTTAACCGTTATTA 1464
||||||||| ||||||||||| |||||||||||| ||||| | |||||||||||||||||
Sbjct 1338 GATCTTTGACCCAAAAGATGGTTATCTATCTCAATTGTCTGGCGAAGTTAACCGTTATTA 1397
Query 1465 TAGTCGTAAGTGGAACTCGTTGAAGGCTACTCT-AAGACAAAAGTACTTCAATAACCCTT 1523
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1398 TAGTCGTAAGTGGAACTCTTTGAAGGCTAC-CTTAAGACAAAAGTACTTCAATAACCCTT 1456
Query 1524 GGGCATATTTCTCCTTTTCAGCTGCAGTTATTCTGCTATTTCTCACATTCTTTCAAAGCT 1583
|||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||
Sbjct 1457 GGGCATATTTCTCCTTTTCAGCTGCACTTGTTCTGCTAATTCTTACATTCTTTCAAAGCT 1516
Query 1584 TCTTTGCTGTCTATGCTTATTATAAGCCACTCTCTTAGttttcatttttttttttcattt 1643
| ||||||||||||||||||||||||||||| ||||| ||||||| || ||||| ||||
Sbjct 1517 TGTTTGCTGTCTATGCTTATTATAAGCCACTTTCTTAACTTTCATTGTTATTTTT-ATTT 1575
Query 1644 t--atttacaat 1653
| ||||| |||
Sbjct 1576 TTCATTTA-AAT 1586
> Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1
Length=1771
Score = 1038 bits (562), Expect = 0.0
Identities = 1197/1490 (80%), Gaps = 98/1490 (7%)
Strand=Plus/Plus
Query 259 AGAAGAAAAGCCAAGAGAGA-CAC--GAGAAGA-A--TGGGTGATCTCGATCAAG-GACA 311
|||||| | |||| |||| | ||| ||||||| | ||||||||||| || ||| ||||
Sbjct 278 AGAAGAGAGGCCAGGAGATACCACAGGAGAAGACAGTTGGGTGATCTCAAT-AAGAGACA 336
Query 312 AGATGGAGAAAGCACTTAGTTACGACG-CA-A-CAAATAGCTGGGACAAGCTCTGTATCT 368
|| | ||| |||||| ||| |||||| || | ||| | | |||| |||||||| ||||
Sbjct 337 AGGTCGAGCAAGCACATAGAGACGACGACACAGCAATTTG--GGGA-AAGCTCTGCATCT 393
Query 369 ACAGAGTTCC-TTTCTATCTTCAAGAGAACGACAAGAAGTCTTACTTACCTCAAACTGTC 427
|||||||||| | || || ||||||||||||||||||| ||||| ||||| || ||
Sbjct 394 ACAGAGTTCCACAT-TACCTGAAAGAGAACGACAAGAAGTCGTACTTCCCTCAGACCGTT 452
Query 428 TCTATTGGTCCGTACCACCATGG--AAAGGTACACCTCAGACCCATGGAGCGTCACAAAT 485
|| ||||||||||||||||||| ||| | | ||| | || |||||||| ||||| |
Sbjct 453 TCGCTTGGTCCGTACCACCATGGTAAAAAG--CGTCTCCGGCCTATGGAGCGCCACAAGT 510
Query 486 GGCGAGCGGTCAATATGATCATGGCACGTACCAAGCA-CAACATTGAAATGTATATTGAC 544
|||| |||||||||| | || || |||| ||||| | ||| |||||||||| | |
Sbjct 511 GGCGCGCGGTCAATAAGGTCCTGAAACGTTTAAAGCAGC-GCATAGAAATGTATACTAAT 569
Query 545 GCCATGAAAGAGCTCGAGGAGGAGGCTCGTGCTTGCTACCAAGGTCCCATTGACATGAAG 604
||||||| |||||| || ||| ||||||||||||||||| ||||||||||| | | |
Sbjct 570 GCCATGAGAGAGCTTGAAGAGAAGGCTCGTGCTTGCTACGAAGGTCCCATT-A-GT-TTG 626
Query 605 AATAGTAATGAGTTCACAGAAATGCTTGTTCTTGATGGTTGTTTCGTTCTCGAGCTCTTC 664
| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 627 AGCAGTAATGAGTTCACTGAAATGCTTGTTCTTGATGGCTGTTTTGTTCTCGAGCTCTTC 686
Query 665 AAGGGAACAATTCAAGGA-TT-CCAGAAAATTGGATATGCACGTAACGACCCGGTTTTCG 722
| |||||| || ||||| || || | |||| |||||||| || ||||| ||||||||||
Sbjct 687 AGGGGAACTGTTGAAGGATTTACC-G-AAATAGGATATGCGCGCAACGATCCGGTTTTCG 744
Query 723 CTAA-GCGAGGATTGATGCATTCGATTCAACGTGACATGATAATGTTGGAAAACCAACTT 781
| || ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 745 C-AATGCGAGGATTGATGCATTCGATTCAACGAGACATGATAATGCTGGAAAATCAACTT 803
Query 782 CCTCTGTTCGTTCTCGACCGGTTATTAGGGCTACAAACC-GGTACACCGAACCAAACGGG 840
||||||||||||||||||||||| ||| | |||| | ||||||| ||||||||| ||
Sbjct 804 CCTCTGTTCGTTCTCGACCGGTTGCTAGAGTTACAG-CTTGGTACACAGAACCAAACCGG 862
Query 841 TATAGTGGCAGAAGTAGCTGTTCGGTTCTTCAAAACACTAATGCCAACTAGCGAGGTGCT 900
|||||||||| | ||||||||| |||||| | | ||||||||||| | |||| | |
Sbjct 863 TATAGTGGCACATGTAGCTGTTAAGTTCTTTGACCCGCTAATGCCAACGGGAGAGGCGTT 922
Query 901 GACCAAATCAGAA-AGATC---GTT-A-GA-CTCGCAGGAAAAATCCGATG-A-A---TT 948
|||||| | || || || | | | || || || |||||||||| || | | ||
Sbjct 923 AACCAAACCGGACCAG-TCAAAGCTCATGAACTGGCTGGAAAAATCCT-TGGACACACTT 980
Query 949 GGGTGACAATGGCGGGTTGCACTGTTTGGATGTGTTCCATCGAAGTCT-CATCCAATCTA 1007
|| |||||| |||| |||||||||||||||||| |||| ||||||||| | || | ||||
Sbjct 981 GG-TGACAAGGGCGAGTTGCACTGTTTGGATGTTTTCCGTCGAAGTCTACTTC-ACTCTA 1038
Query 1008 GTGAGACAACTAAT-CAAGGGACTCCA-TAT-GAGGAT-A--T-GA-----GC-A-TGGT 1053
|| ||| | ||| |||| ||| | || ||| || | | || || | ||||
Sbjct 1039 GTCCTACACCGAATACAAGAT-CTCTACTAAAGAG-ATTAACTAGAAATACGCGAGTGGT 1096
Query 1054 GGAAAAGC-A-A-CAACAATTGATACATTGCGTGACAGAACTAAGAGGC-GCAGGTGTTA 1109
||| |||| | | |||||| || ||||||||||||| |||||||| || || ||||| |
Sbjct 1097 GGACAAGCGACAACAACAAATGGTACATTGCGTGACGGAACTAAG-GGAAGCTGGTGTGA 1155
Query 1110 ACTTCATGAGGAAAG-AAA-CCGGCCAGCTTTGGGACATTGAATTCAAAAACGGTTATCT 1167
| |||| || |||| ||| ||| || | ||||||| |||||||||||||| ||||||||
Sbjct 1156 AGTTCAGGA--AAAGGAAAACCGACCGGTTTTGGGATATTGAATTCAAAAATGGTTATCT 1213
Query 1168 A-AAGATACCGAAACTACTAATCCATGATGGTACCAAGTCTCTTTTCTCAAATCTTATTG 1226
| || ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1214 AGAA-ATACCCAAACTACTAATCCATGATGGTACTAAGTCTCTCTTCTCAAATCTTATAG 1272
Query 1227 CTTTCGAGCAGTGCCATACACAATCAAGCAACAACATAACATCCTACATAATCTTCATGG 1286
|||| |||||||| |||| | || |||||| ||||||||||||||||||| |||||||
Sbjct 1273 CTTTTGAGCAGTGTCATATTGAGTCGAGCAACCACATAACATCCTACATAATTTTCATGG 1332
Query 1287 ATAATCTAATAAACTCTTCTCAAGATGTTAGCTACTTGCACCAC-GACGGTATTATTGAG 1345
|||||||||||||| ||||| ||||||||||||||||||| | | ||||| || |||
Sbjct 1333 ATAATCTAATAAACGCTTCTGAAGATGTTAGCTACTTGCATTATTGT-GGTATCATCGAG 1391
Query 1346 CATTGG-TTAGGGAGTGATTCTGAAGTTGCAGATTTGTTCAACCGGTTATGTAAAGAAGT 1404
|||||| || || ||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 1392 CATTGGCTT-GGTAGTGATTCTGAAGTTGCGGATTTGTTCAACCGGCTATGTCAAGAAGT 1450
Query 1405 GATCTTT-GATCCAAAAGATGGGT-ATCTATCTCAACTGTCTCGTGAAGTTAACCGTTAT 1462
| | ||| ||||| |||||| | | ||||||||| ||||||| |||| || |||||||||
Sbjct 1451 GGT-TTTCGATCCGAAAGATAG-TCATCTATCTCGACTGTCTGGTGATGTAAACCGTTAT 1508
Query 1463 TATAGTCGTAAGTGGAACTCGTT--GAAGGCTACTCTAAGACA-A-AAGTACTTCAATAA 1518
|| | |||||||||||| | ||| ||||||||| || ||| | ||||||||||| ||
Sbjct 1509 TACAATCGTAAGTGGAA-T-GTTTTGAAGGCTAC-CTT-GACGCACAAGTACTTCAACAA 1564
Query 1519 CCCTTGGGCATATTTCTCCTTTTCAGCTGCAGTTATTCTGCTATTTCTCACATTCTTTCA 1578
|||||||||||||| || ||||| |||||||||||| ||||| |||||||||| | |||
Sbjct 1565 TCCTTGGGCATATTTTTCTTTTTCTGCTGCAGTTATTTTGCTACTTCTCACATTATGTCA 1624
Query 1579 AAGCTTCTTTGCTGTCTATGCTTATTATAAGCCAC-TCTCTTAGttttcatttttttttt 1637
|| |||| ||||| |||||||||||||||||| | ||| | ||| | | ||||||
Sbjct 1625 GAGTTTCTACGCTGTGTATGCTTATTATAAGCCAAAT-TCTAAACTTT-AGTCGTTTTTT 1682
Query 1638 tcattttatttacaatatttgta-tttcttgttttttcaatattttctat 1686
|| || |||| ||| |||||| |||||||||||| ||| |||||||||
Sbjct 1683 TCCTTCAATTTGGAATGTTTGTAGTTTCTTGTTTTT-CAACATTTTCTAT 1731
> Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866
Length=1695
Score = 508 bits (275), Expect = 4e-143
Identities = 528/647 (82%), Gaps = 29/647 (4%)
Strand=Plus/Plus
Query 274 AGAGACACGAGAAGAATGGGTGATCTCGATCAAG-GACAAGATGGAGAAAGCACTTAGTT 332
||||||||||| ||||||||||||||| ||| || |||||||||||| |||| |||||
Sbjct 330 AGAGACACGAGGAGAATGGGTGATCTCAATC-AGAGACAAGATGGAGCAAGCGCTTAGAG 388
Query 333 ACGACGCAACAAATAGCTGGGACAAGCTCTGTATCTACAGAGTTCCTTTCTATCTTCAAG 392
| ||||| |||| ||| ||||||||||| ||||||||||||||||| || |||||||
Sbjct 389 AAGACGCCACAACTAGTTGGGACAAGCTATGTATCTACAGAGTTCCACAATACCTTCAAG 448
Query 393 AGAACGACAAGAAGTCTTACTTACCTCAAACTGTCTCTA-TTGGTCCGTACCACCATGGA 451
||||| |||||||||| || || ||||| || ||||| | ||||||||| ||||||||
Sbjct 449 AGAACAACAAGAAGTCCTATTTCCCTCAGACCGTCTC-ACTTGGTCCGTTTCACCATGGC 507
Query 452 AAGGTACACCTCAGACCCATGGAGCGTCACAAATGGCGAGCGGTCAATATGATCATGGCA 511
|| ||| ||| ||||||||| |||||||| ||||| || ||||||||| ||||||||
Sbjct 508 AACAAACATCTCCTACCCATGGACCGTCACAAGTGGCGTGCAGTCAATATGGTCATGGCA 567
Query 512 CGTACCAAGCACAACATTGAAATGTATATTGACGCCATGAAAGAGCTCGAGGAGGAGG-C 570
|||||||| ||| |||||||||||||||||||||||||||||||||| || || ||| |
Sbjct 568 CGTACCAAACACGACATTGAAATGTATATTGACGCCATGAAAGAGCTTGAAGAC-AGGGC 626
Query 571 TCGTGCTTGCTACCAAGGTCCCATTGACATGAAGAATAGTAATGAGTTCACAGAAATGCT 630
||||||||||||| ||||||| || || ||| | | | || ||||| |||||| |
Sbjct 627 TCGTGCTTGCTACGAAGGTCCTATAGATTTGA-GCA--GCAACAAGTTCTGTGAAATG-T 682
Query 631 TG-TTCTTGATGGTTGTTTCGTTCTCGAGCTCTTCA-AGGGAACA-ATTCAAGGATTC-C 686
|| ||||||||||||||||||||||||||||||||| ||| | | || |||||||| |
Sbjct 683 TGGTTCTTGATGGTTGTTTCGTTCTCGAGCTCTTCAGAGG-AGCTGATG-AAGGATTCTC 740
Query 687 AGAAAATTGGATATGCA-CGTAACGACCCGGTTTTCGCTAA-GCGAGGATTGATGCATTC 744
||| | ||||||| | |||||||| || |||||||| || |||||||| ||||||||
Sbjct 741 GGAAC-TCGGATATG-ATCGTAACGATCCAGTTTTCGC-AATGCGAGGATCAATGCATTC 797
Query 745 GATTCAACGTGACATGATAATGTTGGAAAACCAACTTCCTCTGTTCGTTCTCGACCGGTT 804
|||||||||||||||| ||||| | ||||| ||||||||| ||||||||||| |||||||
Sbjct 798 GATTCAACGTGACATGGTAATGCTAGAAAATCAACTTCCTTTGTTCGTTCTCAACCGGTT 857
Query 805 ATTAGGGCTACAAACC-GGTACACCGA-ACCAAACGGGTATAGTGGCAG-AAGTAGCTGT 861
| ||| | |||| | ||| || || ||||||| ||| ||||||| | || |||| ||
Sbjct 858 ACTAGAGATACAG-CTTGGT-CAACGGCACCAAACCGGTTTAGTGGC-GCAATTAGCAGT 914
Query 862 TCGGTTCTTCAAAACACTAATGCCAACT-AGCGAGGTGCTGACCAAA 907
|||||||| | |||||||||| || | ||| || ||||||||
Sbjct 915 ACGGTTCTTTGATCCACTAATGCCTACCGAT-GAGCTGTTGACCAAA 960
> Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1
Length=1687
Score = 414 bits (224), Expect = 9e-115
Identities = 466/577 (81%), Gaps = 40/577 (7%)
Strand=Plus/Plus
Query 1064 CAACAATTGATACATTGCGTGACAGAACTAAGAG-GCGCAGGTGTTAACTTCATGAGGAA 1122
||||||||||||||||| ||||| |||||||||| | || ||| |||| |||| || |||
Sbjct 1110 CAACAATTGATACATTGTGTGACTGAACTAAGAGAG-GCCGGTATTAAATTCAGGA-GAA 1167
Query 1123 AG-AAACCGGCCAGCTTTGGGACATTGAATTCAAAAACGGTTATCTA-AAGATACCGAAA 1180
| |||||| || | ||||||| ||| ||||||||||||||| |||| || |||||||
Sbjct 1168 GGAAAACCGACCGGTTTTGGGATATTCAATTCAAAAACGGTTGTCTAGAA-ATACCGAGG 1226
Query 1181 CTACTAATCCATGATGGTACCAAGTCTCTTTT-CTCAAATCTTATTGCTTTCGAGCAGTG 1239
||||| |||||||| |||||||| |||||||| || |||||||| ||||| ||||||||
Sbjct 1227 CTACTTATCCATGACGGTACCAAATCTCTTTTCCT-GAATCTTATAGCTTTTGAGCAGTG 1285
Query 1240 CCATACAC-AATCAAGCAACAACATAACATCCTACATAATCTTCATGGATAATCTAATAA 1298
||||| | | || || || |||||||||||||||||||||||||||| |||||||||
Sbjct 1286 CCATA-TCGATTCCAGTAATGACATAACATCCTACATAATCTTCATGGACAATCTAATAG 1344
Query 1299 ACTCTTC-TCAAGATGTTAGCTACTTGCACCAC-GACGGTATTATTGAGCATTGGTTAGG 1356
| ||| | | |||||||||||||||| ||| | | ||||| || || |||||| ||||
Sbjct 1345 ATTCT-CATGAAGATGTTAGCTACTTACACTATTGT-GGTATCATCGAACATTGGCTAGG 1402
Query 1357 GAGTGATTCTGAAGTTGCAGATTTGTTCAACCGGTTATGTAAAGAAGT-GATCTTTGAT- 1414
||| ||||||||||| |||||||| |||||||| |||||| ||||||| | | || ||
Sbjct 1403 GAGCGATTCTGAAGTCGCAGATTTATTCAACCGTTTATGTCAAGAAGTTG-TATTCGACA 1461
Query 1415 CCAAAAGATGGGTATCTATCTCAACTGTCTCG-T-GAAGTTAACCGTTATTAT-AGTCGT 1471
|| || ||| | |||||||||| | | ||| | || |||||||||||||| | || |
Sbjct 1462 CCGAA-GATAGCTATCTATCTCGG-T-TATCGATTGAGGTTAACCGTTATTACGA-TCAT 1517
Query 1472 AAGTGGAACT-CGTTGAAGG-CTACTCT-AAGACAAAAGTACTTCAATAACCCTTGGGCA 1528
|||||||| | | ||| ||| ||||| | || ||| |||||||||||||| || ||||||
Sbjct 1518 AAGTGGAA-TGC-TTGGAGGGCTACTTTGAA-ACATAAGTACTTCAATAATCCATGGGCA 1574
Query 1529 TATT-TCTCCTTT-TCAGCTGCAGTTATTCTGCTATTTCTCACATTCTTTCAAAGCTTCT 1586
||| | || ||| | |||||||||||||| ||| | ||||| |||| |||||| || |
Sbjct 1575 -ATTGTTTC-TTTCTGTGCTGCAGTTATTCTACTAGTCCTCACTTTCTCTCAAAG-TT-T 1630
Query 1587 TT--GCTGTCTATGCTTATTATAAGCCACTCT-CTTA 1620
|| ||||| |||||||||||||| |||| || ||||
Sbjct 1631 TTACGCTGTATATGCTTATTATAAACCAC-CTTCTTA 1666
> Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1
Length=1463
Score = 359 bits (194), Expect = 4e-98
Identities = 446/560 (80%), Gaps = 48/560 (9%)
Strand=Plus/Plus
Query 325 ACTTAGTTACGACGCAACAAATAGCTGGGACAAGCTCTGTATCTACAGAGTTCCTTTCTA 384
|||||| ||||||| |||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 265 ACTTAGAGACGACGCCACAACTAGCTGGGACAAGCTTTGTATCTACAGAGTTCCACTCTC 324
Query 385 TCTTCAAG-AGAACGACAAGAAGTCTTACTTACCTCAAACTGTCTCTATTGGTCCGTACC 443
|||| || | |||||||| || || ||||| |||||||| |||||| ||||||||||||
Sbjct 325 CCTTC-AGAAAAACGACAATAACTCCTACTTCCCTCAAACCGTCTCTCTTGGTCCGTACC 383
Query 444 ACCATGGAAAGGTACACCTCAGACCCATGGAGCGTCACAAATGGCGAGCGGTCAATATGA 503
||||| | || | | | |||||||||||| ||||||||||||
Sbjct 384 ACCAT------G---------GA--C-T--A---TCACAAATGGCGTGCGGTCAATATGG 420
Query 504 TCATGGCACGTACCAAGCACA-ACATTGAAATGTATATTGACGCCATGAAAGAGCTCGAG 562
||||| |||||||||||| | ||| | | ||||||||||||||||||||||||||||
Sbjct 421 TCATGAAACGTACCAAGCA-AGGCATCGGATTGTATATTGACGCCATGAAAGAGCTCGAA 479
Query 563 GAGGAGG-CTCGTGCTTGCTACCAAGGTCCCATTGACATGAAGAATAGTAATGAGTTCAC 621
||| ||| ||||| |||||||| |||||| |||| ||| | | |||| |||||||
Sbjct 480 GAG-AGGGCTCGTTCTTGCTACAAAGGTCGTATTGGTTTGA-GCA--GTAACAAGTTCAC 535
Query 622 AGAAATGCTTGTTCTTGATGGTTGTTTCGTTCTCGAGCTCTTCA-AGGGAACA-ATTCAA 679
||||||| ||||||||||||||||| |||||||| ||||||| ||| | | || ||
Sbjct 536 CCAAATGCTAGTTCTTGATGGTTGTTTTGTTCTCGATCTCTTCAGAGG-AGCCTATG-AA 593
Query 680 GGATTCCAGAAAATTGGATATGCA--CGTAACGA-CCCGGTTTTCGCTAAGCGAGGATTG 736
|||||| |||| ||||||| || || ||||| |||| |||| || | |||||||| |
Sbjct 594 GGATTCTTGAAACTTGGATA--CAATCGAAACGATCCCGTTTTT-GCCATGCGAGGATCG 650
Query 737 ATGCATTCGATTCAACGTGACATGATAATGTTGGAAAACCAACTTCCTCTGTTCGTTCTC 796
||||||||||||| |||||||||| ||||| ||||||| ||||||||| |||| || ||
Sbjct 651 ATGCATTCGATTCGACGTGACATGCTAATGCTGGAAAATCAACTTCCTTTGTTTGT-CTT 709
Query 797 GA-CCGGTTATTAGGGCTACAAAC-CGGTACACCGA-ACCAAACGGGTATAGTGGCAGAA 853
| ||||||||||| ||||||| | |||||||| | ||||||| ||| |||||||| ||
Sbjct 710 AAACCGGTTATTAGAGCTACAA-CTCGGTACACA-ATACCAAACCGGTTTAGTGGCACAA 767
Query 854 GTAGCTGTTCGGTTCTTCAA 873
|||| ||||||||||||||
Sbjct 768 TTAGCGGTTCGGTTCTTCAA 787
Score = 302 bits (163), Expect = 7e-81
Identities = 343/428 (80%), Gaps = 20/428 (5%)
Strand=Plus/Plus
Query 1196 GGTACCAAGTCTCTTTTCTCAAATCTTATTGCTTTCGAGCAGTGCCATACACAAT-CAAG 1254
||||||||||||||||||||||||||||| |||| |||||||||||||| | || |||
Sbjct 1038 GGTACCAAGTCTCTTTTCTCAAATCTTATAGCTTACGAGCAGTGCCATAT-CGATTCAAC 1096
Query 1255 CAACAACATAACATCCTACATAATCTTCATGGATAATCTAATAAACTCTTCTCAAGATGT 1314
|||| | ||||||||||||||||| |||||||| ||||||||| | ||| || | ||| |
Sbjct 1097 CAACGATATAACATCCTACATAATTTTCATGGACAATCTAATAGATTCTGCTGACGATAT 1156
Query 1315 TAGCTACTTGCACCACGACGGTATTATTGAGCATTGGTTAGGGAGTGATTCTGAAGTTGC 1374
||| || |||||| || | | ||| || ||||| |||||||| | |||||| ||||||||
Sbjct 1157 TAGGTATTTGCACTACTATGATATCATCGAGCACTGGTTAGGAAATGATTCGGAAGTTGC 1216
Query 1375 AGATTTGTTCAACCGGTTATGTAAAGAAGTGATCTTT-GATC-CAAAAGATGGGTATCTA 1432
||| | ||||||||| ||||| |||||||| |||| || | | ||| || ||| ||
Sbjct 1217 TGATGTCTTCAACCGGCTATGTCAAGAAGTGG-CTTTCGACCTCGAAA-ATACTTATTTA 1274
Query 1433 TCTCAACTGTCTCGTGAAGTTA-ACCGTTATTATAGTCGTAAGTGGAACTCGTT--GAAG 1489
||| || |||| | ||| | |||||| ||||| || |||||||| | ||| ||||
Sbjct 1275 TCTGAATTGTCAAAT-AAGGTGGACCGTTTTTATAACCGAAAGTGGAA-T-GTTCTGAAG 1331
Query 1490 GCTACTCT--AAGACAAAAGTACTTCAATAACCCTTGGGCATATTTCTCCTT-TTCAGCT 1546
|| || || || ||| |||||||||| ||| ||||||||||||||||| || || ||
Sbjct 1332 GCAAC-CTTGAA-ACACAAGTACTTCAGTAATCCTTGGGCATATTTCTCTTTCTTT-GCA 1388
Query 1547 GCAGTTATTCTGCTATTTCTCACATTCTTTCAAAGCTTCTTTGCT-GTCTATGCTTATTA 1605
||||||||||||||| |||||||||| ||||| || || ||| || || ||| ||||||
Sbjct 1389 GCAGTTATTCTGCTACTTCTCACATTATTTCAGAGTTTTTTTACTAGT-TATCCTTATTT 1447
Query 1606 TAAGCCAC 1613
||||||||
Sbjct 1448 TAAGCCAC 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5