BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50170.1
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1 2663 0.0
Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1 1170 0.0
Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866 1027 0.0
Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137 468 7e-131
> Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1
Length=1771
Score = 2663 bits (1442), Expect = 0.0
Identities = 1677/1788 (94%), Gaps = 26/1788 (1%)
Strand=Plus/Plus
Query 3 AATTACAGCTTTTGCTCTCAATCTCCTGAAAAAAGCTTCAACCAGCAAAACCAATGGTTT 62
|||||||||| ||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 1 AATTACAGCTCTTGCTCTCAATCTCCTG---AAACCTCCAACCAGCAAAACCAATGGTTT 57
Query 63 TAGTTAATGTTCATTCCGATGGACAACCAATTATCATCAACAAAGACATGTTAACTTGGT 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TAGTTAATGTTCATTCCGATGGACAACCAATTATCATCAACAAAGACATGTTAACTTGGT 117
Query 123 ACTTGCTCAGCCTCAAGCTCAGACAAAAATTTCAAACCAAAAACCAACACTCGGAACCGG 182
|||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 118 ACTTGCTCAGCCTCAAGCTCCGCCAAAAATTCCAAACCAAAAACCAACACTCGGAACCGG 177
Query 183 TTCAAGATCCGAATCTCCACGGTTTA-CCGGAAG-TTACCAGACCGAATCAAGACCAAAA 240
||||||||| |||||||||||||||| || | || || || | | ||||||||||||
Sbjct 178 TTCAAGATCAGAATCTCCACGGTTTATCC-G-AGATT-CC-G---G-TTCAAGACCAAAA 229
Query 241 CGTGCAGAACCACAAGCAGTCTCATTCCGAGTCAGGTAAGGAGGTGGTAGAAGAGAGGCC 300
| | ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 230 CTTTCAGAACCACAAACAGACTCATTCCGAGTCCGGTAAGGAGGTGGTAGAAGAGAGGCC 289
Query 301 AGAAGAGACCACA-G-G-AGACAGTTGGGTGATCTCAATAAGAGACAAGCTCGAGCAAGC 357
|| ||| |||||| | | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 290 AGGAGATACCACAGGAGAAGACAGTTGGGTGATCTCAATAAGAGACAAGGTCGAGCAAGC 349
Query 358 AGATAGAGACGACGACACAACAATTTGGGGAAAGCTCTGCATCTACAGAGTTCCACATTA 417
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 350 ACATAGAGACGACGACACAGCAATTTGGGGAAAGCTCTGCATCTACAGAGTTCCACATTA 409
Query 418 CCT-ACAAGAGAACGACAAGAAGTCCTATTTCCCTCAGACTGTTTCGCTTGGTCCGTACC 476
||| | ||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 410 CCTGA-AAGAGAACGACAAGAAGTCGTACTTCCCTCAGACCGTTTCGCTTGGTCCGTACC 468
Query 477 ACCATGGTAAAAAGCGTCTTCGGCCTATGGAGCGCCACAAGTGGCGTGCGCTCAATAAGG 536
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 469 ACCATGGTAAAAAGCGTCTCCGGCCTATGGAGCGCCACAAGTGGCGCGCGGTCAATAAGG 528
Query 537 TCCTGAAACGTTTAAAGCAGCGCATTGAAATGTATACTAATGCCATGAGAGAGCTTGAAG 596
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 529 TCCTGAAACGTTTAAAGCAGCGCATAGAAATGTATACTAATGCCATGAGAGAGCTTGAAG 588
Query 597 AGAAGGCTCGTGCTTGCTATGAAGGTCCCATTAGTTTGAGCAGGAATGAGTTCACAGAAA 656
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 589 AGAAGGCTCGTGCTTGCTACGAAGGTCCCATTAGTTTGAGCAGTAATGAGTTCACTGAAA 648
Query 657 TGCTTGTTCTTGATGGCTGTTTTGTTCTCGAGCTCTTCAGGGGAACCGTTGAAGGATTTA 716
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 649 TGCTTGTTCTTGATGGCTGTTTTGTTCTCGAGCTCTTCAGGGGAACTGTTGAAGGATTTA 708
Query 717 CCGAGATAGGATATGCACGTAACGACCCGGTTTTCGCGATGCGAGGATTGATGCATTCAA 776
|||| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| |
Sbjct 709 CCGAAATAGGATATGCGCGCAACGATCCGGTTTTCGCAATGCGAGGATTGATGCATTCGA 768
Query 777 TTCAACGTGATATGATAATGCTGGAAAATCAACTTCCCCTGTTTGTTCTTGACCGGTTAT 836
||||||| || |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 769 TTCAACGAGACATGATAATGCTGGAAAATCAACTTCCTCTGTTCGTTCTCGACCGGTTGC 828
Query 837 TAGAGTTACAGCTCGGTACACAAAACCAAACCGGTATAGTGGCACACGTAGCCGTTAAGT 896
||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 829 TAGAGTTACAGCTTGGTACACAGAACCAAACCGGTATAGTGGCACATGTAGCTGTTAAGT 888
Query 897 TCTTTGACCCGCTAATGCCAACGGGAGAGGCGTTGACCAAACCGGACCAGTCAAAACTCA 956
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 889 TCTTTGACCCGCTAATGCCAACGGGAGAGGCGTTAACCAAACCGGACCAGTCAAAGCTCA 948
Query 957 TGAACTGGCTGGAAAAATCATTGGACACACTTGGTGACAAGGGCGAGTTGCACTGTTTGG 1016
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGAACTGGCTGGAAAAATCCTTGGACACACTTGGTGACAAGGGCGAGTTGCACTGTTTGG 1008
Query 1017 ATGTTTTCCGTCGAAGTCTACTCCAGTCTAGTCCTACACCGAACACAAGATCTCTCCTAA 1076
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct 1009 ATGTTTTCCGTCGAAGTCTACTTCACTCTAGTCCTACACCGAATACAAGATCTCTACTAA 1068
Query 1077 AGAGATTGACTAGGAATACGCGAGTGGTGGATAAGCGACAACAACAACTGGTACATTGCG 1136
||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1069 AGAGATTAACTAGAAATACGCGAGTGGTGGACAAGCGACAACAACAAATGGTACATTGCG 1128
Query 1137 TGACAGAACTAAGGGAAGCTGGTGTGAAGTTCAGGAAAAGGAAAACCGACCGGTTTTGGG 1196
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TGACGGAACTAAGGGAAGCTGGTGTGAAGTTCAGGAAAAGGAAAACCGACCGGTTTTGGG 1188
Query 1197 ATATTGAATTCAAAAATGGTTATCTAGAAATACCCAAACTACTAATCCATGATGGTACTA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ATATTGAATTCAAAAATGGTTATCTAGAAATACCCAAACTACTAATCCATGATGGTACTA 1248
Query 1257 AGTCTCTCTTCTCAAATCTTATAGCATTTGAGCAGTGTCATATCGAGTCGAGCAACCACA 1316
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1249 AGTCTCTCTTCTCAAATCTTATAGCTTTTGAGCAGTGTCATATTGAGTCGAGCAACCACA 1308
Query 1317 TAACATCCTACATTATTTTTATGGATAATCTAATAAACTCTAGC-GAAGATGTTAGCTAC 1375
||||||||||||| ||||| |||||||||||||||||| || | |||||||||||||||
Sbjct 1309 TAACATCCTACATAATTTTCATGGATAATCTAATAAACGCTT-CTGAAGATGTTAGCTAC 1367
Query 1376 TTGCATTATTGTGGTATCATCGAGCATTGGCTTGGGAGTGATTCGGAAGTTGCGGATTTG 1435
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1368 TTGCATTATTGTGGTATCATCGAGCATTGGCTTGGTAGTGATTCTGAAGTTGCGGATTTG 1427
Query 1436 TTCAACCGGCTATGTCAAGAAGTGGTTTTCGATCCCAAAGATAGTCATCTATCTCGACTG 1495
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1428 TTCAACCGGCTATGTCAAGAAGTGGTTTTCGATCCGAAAGATAGTCATCTATCTCGACTG 1487
Query 1496 TCTGGTGATGTAAACCGTTATTACAATCGTAAGTGGAATGTTTTGAAGGCTACCTTGACA 1555
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCTGGTGATGTAAACCGTTATTACAATCGTAAGTGGAATGTTTTGAAGGCTACCTTGACG 1547
Query 1556 CACAAGTACTTCAATAATCCTTGGGCATATTTTTCTTTTTCTGCTGCAGTTATTTTGCTA 1615
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CACAAGTACTTCAACAATCCTTGGGCATATTTTTCTTTTTCTGCTGCAGTTATTTTGCTA 1607
Query 1616 CTTCTCACATTATGTCAGAGTTTTTATGCTGTTTATGCTTATTATAAGCCCAATTCTAAA 1675
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 1608 CTTCTCACATTATGTCAGAGTTTCTACGCTGTGTATGCTTATTATAAGCCAAATTCTAAA 1667
Query 1676 CTCTAGTTGGGGGTTTTTCCCATCAATTTGGAATGTTTGTATTTTCTTGTTTTTCAACAT 1735
|| |||| | ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1668 CTTTAGTCGTT--TTTTTCCT-TCAATTTGGAATGTTTGTAGTTTCTTGTTTTTCAACAT 1724
Query 1736 TTTCTATGTACT-TGACCAAGA-TTTTGCATTGTAATAATTGGGTTTT 1781
||||||||| | | | ||| ||||||||||||| |||||||||||
Sbjct 1725 TTTCTATGTTTTCT-ATTTAGAATTTTGCATTGTAACAATTGGGTTTT 1771
> Ahg485370 jgi|Araly1|485370|fgenesh2_kg.5__1362__AT3G50120.1
Length=1687
Score = 1170 bits (633), Expect = 0.0
Identities = 1291/1601 (81%), Gaps = 75/1601 (5%)
Strand=Plus/Plus
Query 104 AAAGACATGTTAACTTGGTACTTGCTCAGCCTCAAGCTCAGAC-AAAAATTTC-AAACCA 161
||||||||||| | ||||||||| |||| ||||||| || | | ||||| || |||||
Sbjct 87 AAAGACATGTTGAGTTGGTACTTACTCACCCTCAAGATCCG-CGAAAAA-CTCGAAACCC 144
Query 162 AAAACCAACACTCGGAACCGG-T--TCAAGATCCGAATCTCCACGGTTTACCGGAAGTTA 218
|||||||| | || ||| ||| | |||||||| || |||| | ||||||| ||| |
Sbjct 145 AAAACCAAGAATCCGAATCGGTTAATCAAGATCAAAACCTCCCCAGTTTACCCGAA---A 201
Query 219 CCAGA-CCGAATCAAGACCAAAAC-GTGCAGAACCACAAGCAGTCTCA-TTCCGAGTCAG 275
|||| ||| |||||||||||||| | || |||| | ||||| || | || ||| | |
Sbjct 202 TCAGATCCG-ATCAAGACCAAAACAAT-CATAACCTCGAGCAGACT-AGATCTGAGCCCG 258
Query 276 GTAAG---GAGGTGGT-AGAAGAGAGGCCAGAAGAGACCACAGGAGACAG-TTGGGTGAT 330
||||| || ||| | | ||||||| ||| || ||| || ||||| | |||||||||
Sbjct 259 GTAAGATAGATGTGATCA-AAGAGAGTCCA-AA-AGA-TTCACGAGAC-GATTGGGTGAT 313
Query 331 CTCAATAAGAGACAAGCTCGAGCAAGCAG-ATAGAGACGACGACACAACAATTTGGGGAA 389
||| || | ||||||||||| ||||| | |||||||||| ||||| ||| | |||||||
Sbjct 314 CTCCATCACTGACAAGCTCGAACAAGC-GCATAGAGACGATGACACGACACTCTGGGGAA 372
Query 390 AGCTCTGCATCTACAGAGTTCCACATTACCTACAAGAGAACGACAAGAAGTCCTATTTCC 449
||||||| ||||||||||||||| ||||||| ||||| |||||||| || || |||||||
Sbjct 373 AGCTCTGTATCTACAGAGTTCCATATTACCTTCAAGAAAACGACAACAAATCGTATTTCC 432
Query 450 CTCAGACTGTTTCGCTTGGTCCGTACCACCATGGTAAAAAGCGTCTTCGGCCTATGGAGC 509
||||||| || ||||||||||||||||| || |||||||| ||||| ||| |||||| |
Sbjct 433 CTCAGACCGTCTCGCTTGGTCCGTACCATCACGGTAAAAAACGTCTCCGGTATATGGACC 492
Query 510 GCCACAAGTGGCGTGCGCTCAATAAG-GTCCTGAAACGTTTAAAGC-AGCGCATTGAAAT 567
| ||||| ||||||||| ||| | || ||| |||||||| || | || ||||| ||||
Sbjct 493 GTCACAAATGGCGTGCGGTCAGT-AGAGTCTTGAAACGTACGAACCAAG-GCATTAAAAT 550
Query 568 GTATACTA-ATGCCATGAGAGAGCTTGAAGAGAAGGCTCGTGCTTGCTATGAAGGTCCCA 626
||||| || | |||||||||||||| || || |||||| | ||||| || |||||||||
Sbjct 551 GTATA-TAGACGCCATGAGAGAGCTAGAGGAAAAGGCTAGAGCTTGTTACGAAGGTCCC- 608
Query 627 TT-AGTTTGAGCAGGAATGAGTTCACAGAAATGCTTGTTCTTGATGGCTGTTTTGTTCTC 685
|| ||||||| ||| || || || | ||||||||||||||||||||| |||||||||||
Sbjct 609 TTAAGTTTGAACAGTAACGAATTTATAGAAATGCTTGTTCTTGATGGTTGTTTTGTTCTT 668
Query 686 GAGCTCTTCAGGGGAACCGTTGAAGGATTTACCGAGA-TAGGATATGCACGTAACGACCC 744
|||||||| || ||| ||||||||||||| || || | | ||||||||||||||||| ||
Sbjct 669 GAGCTCTTTAGAGGAGCCGTTGAAGGATTCACGGA-ACTCGGATATGCACGTAACGATCC 727
Query 745 GGTTTTCGCGATGCGAGGATTGATGCATTCAATTCAACGTGATATGATAATGCTGGAAAA 804
||||| |||||| |||||| |||||||| ||||||||||| ||| ||||||| |||||
Sbjct 728 AGTTTTTGCGATGAGAGGATCAATGCATTCGATTCAACGTGACATGGTAATGCTAGAAAA 787
Query 805 TCAACTTCCCCTGTTTGTTCTT-GACCGGTTATTAGAGTTACAGCTCGGTACACA-AAAC 862
||||||||| |||||||| || |||| ||||||||| ||||||| |||||| | |||
Sbjct 788 TCAACTTCCTTTGTTTGTT-TTAAACCGATTATTAGAGCTACAGCTTGGTACA-AGGAAC 845
Query 863 CAAACCGGTATAGTGGCACACGTAGCCGTTAAGTTCTTTGACCCGCTAATGCCAACGGGA 922
||||||||| |||||||||| |||| ||| ||||||||| || ||||||||||| |||
Sbjct 846 CAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTTGATCCACTAATGCCAAC-GGA 904
Query 923 -GAGGCGTTGACCAAA-CCGGACCAGTCAAAACTC-ATGAA--C--TGGC-TG-GAAAAA 973
||| | ||||||||| | || ||||||||||||| | ||| | |||| | || |||
Sbjct 905 CGAGCCATTGACCAAATCTGG-CCAGTCAAAACTCGA-GAACTCGTTGGCAAGAGATAAA 962
Query 974 TCATTGGACACACTT-GGTGACAAGGGCGAGTTGCACTGTTTGGATGTTTTCCGTCGAAG 1032
| || ||| || || | || | ||| || || || ||| | |||||||||||||||||
Sbjct 963 GCCTTTGACCCA-TTCGCCGATATGGGAGAATTACATTGTCTAGATGTTTTCCGTCGAAG 1021
Query 1033 TCTACTCCAGTCTAGTCCTACACC-GAACACAAGATCTCTC-CTAAAGAGAT--T-GACT 1087
| | |||| ||||||||||| ||| || | | || | | | |||||||| | ||
Sbjct 1022 TTTGCTCCGGTCTAGTCCTAAACCGGAGC-CTAGGT-TAACAAGAAAGAGATGGTCTCCT 1079
Query 1088 AGGAATACGCGAGTGGTGGATAAGCGACAACAACAACTGGTACATTGCGTGACAGAACTA 1147
| || ||||| |||| ||| ||||| | |||||| || ||||||| ||||| ||||||
Sbjct 1080 CGAAACACGCGTGTGGCGGACAAGCGCCGGCAACAATTGATACATTGTGTGACTGAACTA 1139
Query 1148 AGGGAAGCTGGTGTGAAGTTCAGGAAAAGGAAAACCGACCGGTTTTGGGATATTGAATTC 1207
|| || || ||| | || ||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1140 AGAGAGGCCGGTATTAAATTCAGGAGAAGGAAAACCGACCGGTTTTGGGATATTCAATTC 1199
Query 1208 AAAAATGGTTATCTAGAAATACCCAAACTACTAATCCATGATGGTACTAAGTCTCTCTTC 1267
||||| |||| |||||||||||| | ||||| |||||||| ||||| || ||||| |||
Sbjct 1200 AAAAACGGTTGTCTAGAAATACCGAGGCTACTTATCCATGACGGTACCAAATCTCTTTTC 1259
Query 1268 -TCAAATCTTATAGCATTTGAGCAGTGTCATATCGAGTCGAGCAACCACATAACATCCTA 1326
| || ||||||||| ||||||||||| |||||||| || || || |||||||||||||
Sbjct 1260 CTGAA-TCTTATAGCTTTTGAGCAGTGCCATATCGATTCCAGTAATGACATAACATCCTA 1318
Query 1327 CATTATTTTTATGGATAATCTAATAAACTCT-AGCGAAGATGTTAGCTACTTGCATTATT 1385
||| || || ||||| ||||||||| | ||| | ||||||||||||||||| || ||||
Sbjct 1319 CATAATCTTCATGGACAATCTAATAGATTCTCAT-GAAGATGTTAGCTACTTACACTATT 1377
Query 1386 GTGGTATCATCGAGCATTGGCTTGGGAGTGATTCGGAAGTTGCGGATTTGTTCAACCGGC 1445
||||||||||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||
Sbjct 1378 GTGGTATCATCGAACATTGGCTAGGGAGCGATTCTGAAGTCGCAGATTTATTCAACCGTT 1437
Query 1446 TATGTCAAGAAGTGGTTTTCGATC-CCAAAGATAG-TCATCTATCTCGACTGTCTGGT-G 1502
||||||||||||| || ||||| | || ||||||| | |||||||||| | || | | |
Sbjct 1438 TATGTCAAGAAGTTGTATTCGA-CACCGAAGATAGCT-ATCTATCTCGGTTATC-GATTG 1494
Query 1503 ATGTAAACCGTTATTACAATCGTAAGTGGAATGTTTTGAAGGCTACCTTGACACACAAGT 1562
| || |||||||||||| ||| ||||||||||| || || |||||| |||| ||| ||||
Sbjct 1495 AGGTTAACCGTTATTACGATCATAAGTGGAATGCTTGGAGGGCTACTTTGAAACATAAGT 1554
Query 1563 ACTTCAATAATCCTTGGGCATATT-TTTCTTTTTCTGCTGCAGTTATTTTGCTACTTCTC 1621
||||||||||||| |||||| ||| ||||||| | ||||||||||||| | ||| | |||
Sbjct 1555 ACTTCAATAATCCATGGGCA-ATTGTTTCTTTCTGTGCTGCAGTTATTCTACTAGTCCTC 1613
Query 1622 ACATTATGTCAGAGTTTTTATGCTGTTTATGCTTATTATAA 1662
|| || | ||| |||||||| ||||| ||||||||||||||
Sbjct 1614 ACTTTCTCTCAAAGTTTTTACGCTGTATATGCTTATTATAA 1654
> Ahg897900 jgi|Araly1|897900|Al_scaffold_0005_1866
Length=1695
Score = 1027 bits (556), Expect = 0.0
Identities = 1126/1392 (81%), Gaps = 76/1392 (5%)
Strand=Plus/Plus
Query 302 GAAGAGACCAC-AGGAGACAGTTGGGTGATCTCAATAAGAGACAAGCTCGAGCAAGCAG- 359
||||||| ||| |||||| | |||||||||||||| ||||||||| | |||||||| |
Sbjct 328 GAAGAGA-CACGAGGAGA-A--TGGGTGATCTCAATCAGAGACAAGATGGAGCAAGC-GC 382
Query 360 ATAGAGACGACGACACAACAATTTGGGGA-AAGCTCTGCATCTACAGAGTTCCACATTAC 418
|||||| |||| |||||| | || |||| ||||| || ||||||||||||||||| |||
Sbjct 383 TTAGAGAAGACGCCACAACTAGTT-GGGACAAGCTATGTATCTACAGAGTTCCACAATAC 441
Query 419 CTACAAGAGAACGACAAGAAGTCCTATTTCCCTCAGACTGTTTCGCTTGGTCCGTACCAC 478
|| ||||||||| ||||||||||||||||||||||||| || || |||||||||| |||
Sbjct 442 CTTCAAGAGAACAACAAGAAGTCCTATTTCCCTCAGACCGTCTCACTTGGTCCGTTTCAC 501
Query 479 CATGGTAA-AAAGCGTCTTCGGCCTATGGAGCGCCACAAGTGGCGTGC-GCTCAATAAGG 536
||||| || ||| | ||| | || ||||| || |||||||||||||| | |||||| ||
Sbjct 502 CATGGCAACAAA-CATCTCCTACCCATGGACCGTCACAAGTGGCGTGCAG-TCAATATGG 559
Query 537 TCCTGAAACGT-TTAAAGCAGCG-CATTGAAATGTATACTAATGCCATGAGAGAGCTTGA 594
|| || |||| ||| || || |||||||||||||| | | ||||||| |||||||||
Sbjct 560 TCATGGCACGTACCAAA-CA-CGACATTGAAATGTATATTGACGCCATGAAAGAGCTTGA 617
Query 595 AGAGAAGGCTCGTGCTTGCTATGAAGGTCCCATTAG-TTTGAGCAGGAATGAGTTCACAG 653
||| | ||||||||||||||| |||||||| | ||| ||||||||| || ||||| |
Sbjct 618 AGACAGGGCTCGTGCTTGCTACGAAGGTCCTA-TAGATTTGAGCAGCAACAAGTTCTGTG 676
Query 654 AAATGCTT-GTTCTTGATGGCTGTTTTGTTCTCGAGCTCTTCAGGGGAACCGTTGAAGGA 712
||||| || ||||||||||| ||||| ||||||||||||||||| ||| | | |||||||
Sbjct 677 AAATG-TTGGTTCTTGATGGTTGTTTCGTTCTCGAGCTCTTCAGAGGAGCTGATGAAGGA 735
Query 713 TT-TACCGAGA-TAGGATATGCA-CGTAACGACCCGGTTTTCGCGATGCGAGGATTGATG 769
|| | | || | | ||||||| | |||||||| || |||||||| |||||||||| |||
Sbjct 736 TTCT-CGGA-ACTCGGATATG-ATCGTAACGATCCAGTTTTCGCAATGCGAGGATCAATG 792
Query 770 CATTCAATTCAACGTGATATGATAATGCTGGAAAATCAACTTCCCCTGTTTGTTCTTGAC 829
||||| ||||||||||| ||| ||||||| |||||||||||||| |||| ||||| ||
Sbjct 793 CATTCGATTCAACGTGACATGGTAATGCTAGAAAATCAACTTCCTTTGTTCGTTCTCAAC 852
Query 830 CGGTTATTAGAGTTACAGCTCGGTAC-ACAAAACCAAACCGGTATAGTGGCACACGTAGC 888
|||||| ||||| ||||||| ||| | || ||||||||||| ||||||| || ||||
Sbjct 853 CGGTTACTAGAGATACAGCTTGGT-CAACGGCACCAAACCGGTTTAGTGGCGCAATTAGC 911
Query 889 CGTTA-AGTTCTTTGACCCGCTAATGCCAACGGGA-GAGGC-GTTGACC-AAACCGGACC 944
| || ||||||||| || |||||||| || || || || ||||||| ||||| |||
Sbjct 912 AG-TACGGTTCTTTGATCCACTAATGCCTAC-CGATGA-GCTGTTGACCAAAACC-GACA 967
Query 945 AGTCA----AAACTCATGAACTGGCTGGAAAAATC-ATTGGACAC-ACTTGGTGACAAGG 998
| ||| ||| | || || | || || | ||| | | | | | | |||||||
Sbjct 968 ACTCATTGGAAAATGAT-AAAT-TCT--TTAACCCGATT-G-C-CGA-TAAG-GACAAGG 1018
Query 999 GCGAGTTGCACTGTTTGGATGTTTTCCGTCGAAGTCTACTCCAGTCTAGTCCTACACC-G 1057
| |||||||| ||| | |||||||||||||||| |||||| | | || || | | ||| |
Sbjct 1019 GAGAGTTGCATTGTCTAGATGTTTTCCGTCGAAATCTACTTCGGCCTTGTTCGAAACCGG 1078
Query 1058 AACACAAGATCTCTCCTA-AA-GAGATTGAC-TAGGAATACGCGAGTGGTGGATAAGCGA 1114
| | | || | | | | | || ||||| | | | |||| || || |||| |||||||||
Sbjct 1079 AGC-CGAGGT-TAT-CAAGAAGGAGATGGTCGT-GGAAAACTCGTGTGGCGGATAAGCGC 1134
Query 1115 CAACAACAACTGGTACATTGCGTGACAGAACTAAGGGAAGCTGGTGTGAAGTTCAGGAA- 1173
|||||||||||| ||||||||||||| |||||||| ||||||||| | || |||| |||
Sbjct 1135 CAACAACAACTGATACATTGCGTGACCGAACTAAGAGAAGCTGGTATTAAATTCA-GAAG 1193
Query 1174 AAGGAAAACCGACCGGTTTTGGGATATTGA-ATTCAAAAATGGTTATCTAGAAATACCCA 1232
||||||||||||||||||||||||||| | ||| |||| |||||||| || ||||| |
Sbjct 1194 GAGGAAAACCGACCGGTTTTGGGATATT-AGGTTCGAAAACGGTTATCTCGAGATACCTA 1252
Query 1233 AACTACTAATCCATGATGGTACTAAGTCTCTCTTCTCAAATCTTATAGCATTT-GAGCAG 1291
|||||||||||||||| ||||| || ||||||||||| ||||||||||| ||| || |||
Sbjct 1253 AACTACTAATCCATGACGGTACCAAATCTCTCTTCTCGAATCTTATAGC-TTTCGAACAG 1311
Query 1292 TGTCATATCGAGTCGAGCAACCACATAACATCCTACATTATTTTTATGGATAATCTAATA 1351
|||||||| || ||||||||| | |||||||| ||||| || ||||||||||||||||||
Sbjct 1312 TGTCATATTGACTCGAGCAACGATATAACATCATACATAATCTTTATGGATAATCTAATA 1371
Query 1352 AACTCTAGC-GAAGATGTTAGCTACTTGCATTATTGTGGTATCATCGAGCATTGGCTT-G 1409
| ||| | ||||||||||| || ||||||||||||||||||||||| |||||| || |
Sbjct 1372 GATTCT-CCAGAAGATGTTAGTTATTTGCATTATTGTGGTATCATCGAACATTGG-TTAG 1429
Query 1410 GGAGTGATTCGGAAGTTGCGGATTTGTTCAACCGGCTATGTCAAGAAGTGGTTTTCGATC 1469
| | ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1430 GAAATGATTATGAAGTTGCGGATTTGTTCAACCGGCTATGTCAAGAAGTGGCTTTCGACC 1489
Query 1470 CC-AAAGATAGTCATCTATCTCGACTGTCTGG-TGATGTAAACCGTTATTACAATCGTAA 1527
|| ||| ||||| || |||| | |||||| | | | || | || |||| | || ||
Sbjct 1490 CCCAAA-ATAGTTATTTATCGCAACTGTC-GAATAAAGTTGATCGGAATTATAGCCGCAA 1547
Query 1528 GTGGAATGTTTTGAAGGCTACCTTGACACACAAGTACTTCAATAATCCTTGGGCATATTT 1587
|||||||||| ||||||| | ||| | |||||||||||||||||||||||||||||||||
Sbjct 1548 GTGGAATGTTCTGAAGGCGATCTTAAAACACAAGTACTTCAATAATCCTTGGGCATATTT 1607
Query 1588 TTCTTTTTCTGCTGCAGTTATTTTGCTACTTCTCACATTATGTCAGAGTTTTTATG-CTG 1646
||||||| ||||||| || | ||||| ||||||| |||| ||||||||||| | |||
Sbjct 1608 CTCTTTTTTTGCTGCACTTGTCCTGCTATTTCTCACGTTATTTCAGAGTTTTT-TCACTG 1666
Query 1647 TTTATGCTTATT 1658
|||| ||||||
Sbjct 1667 CTTATCCTTATT 1678
> Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137
Length=1743
Score = 468 bits (253), Expect = 7e-131
Identities = 505/623 (81%), Gaps = 31/623 (5%)
Strand=Plus/Plus
Query 323 TGGGTGATCTCAATAAG-AGACAAGCTCGAGCAAGCAGATAGAGACGACGACACAACAAT 381
|||||||||||||| | || ||||||| || ||||| |||||||||| |||| ||| |
Sbjct 439 TGGGTGATCTCAAT-GGAAGGCAAGCTCAAGGAAGCATATAGAGACGATGACAGAACTAG 497
Query 382 TTGGGGAAAGCTCTGCATCTACAGAGTTCCACATTACCTACA-AGAGAACGACAAGAAGT 440
||||| |||||||| || |||| |||||||||||||||||| || |||||||||||||
Sbjct 498 CTGGGGCAAGCTCTGTATATACAAAGTTCCACATTACCTACATGGA-AACGACAAGAAGT 556
Query 441 CCTATTTCCCTCAGACTGTTTCGCTTGGTCCGTACCACCATGGTAAAAAGC-GTCTTC-G 498
| ||||||||||||||||| ||||||||||| ||||||||||| | | ||| | | |
Sbjct 557 CGTATTTCCCTCAGACTGTCTCGCTTGGTCCATACCACCATGGGAGACAGCAAAC-ACAG 615
Query 499 -GCCTATGGAGCGCCACAAGTGGCGTG-CGCTCAATAAGGTCCTGAAACGTTTAAAGC-A 555
| | |||||| ||||||| ||||||| || ||| || ||| ||||||||| || | |
Sbjct 616 TG-C-ATGGAGTGCCACAAATGGCGTGCCG-TCAGTATGGTACTGAAACGTACGAACCAA 672
Query 556 GCGCATTGAAATGTATAC-TAATGCCATGAGAGAGCTTGAAGAGAAGGCTCGTGCTTGCT 614
| |||||||| ||| | | | | ||||||| | |||||||||||||||||||||||||||
Sbjct 673 G-GCATTGAAGTGT-TTCTTGACGCCATGACAAAGCTTGAAGAGAAGGCTCGTGCTTGCT 730
Query 615 ATGAAGGTCCCATTAG-TTT-GAGCAGGAATGAGTTCACAGAAATGCTTGTTCTTGATGG 672
| |||||||||||| | ||| || ||| || | |||||||||||||||||||||||||||
Sbjct 731 ACGAAGGTCCCATT-GTTTTGGA-CAGTAACGGGTTCACAGAAATGCTTGTTCTTGATGG 788
Query 673 CTGTTTTGTTCTCGAGCTCTTC-AGGGGAACCGTTGAAGGATT-TACCGAGA-TAGGATA 729
||| ||| ||||||||||| || | || | || ||||||||| | || | | |||||
Sbjct 789 CTGCTTTATTCTCGAGCTCCTCCAAGG-AGTCGCTGAAGGATTCTT--GAAACTCGGATA 845
Query 730 TGCA-CGTAACGACCCGGTTTTCGCGATGCGAGGATTGATGCATTCAATTCAACGTGATA 788
|| | | |||||| || ||||||||| | ||||||| ||||||||| || |||||||| |
Sbjct 846 TG-ATCATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATACAACGTGACA 904
Query 789 TGATAATGCTGGAAAATCAACTTCCCCTGTTTGTTCTTGACCGGTTATTAGAGTTACAGC 848
||||||||||||||||||||||||| |||| || || |||||||||||||||||||||
Sbjct 905 TGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTACAGC 964
Query 849 TCGGTACACAAAACCAAACCGGTATAGTGGCACACGTAGCCGTTAAGTTCTTTGACCCGC 908
|| | |||| ||| |||| ||| |||||| | | ||| ||| |||||| | || |
Sbjct 965 CCGATTCACAGAACAAAACTGGTTTAGTGG-A-AT-TAGTGGTTCGGTTCTTCGTTCCAC 1021
Query 909 TAATGCCAACGGGAGAGGCGTTG 931
|||||||||||| ||| |||||
Sbjct 1022 TAATGCCAACGGCCGAGACGTTG 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66924560465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5