BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50180.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137 2407 0.0
Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1 473 1e-132
Ahg485373 jgi|Araly1|485373|fgenesh2_kg.5__1365__AT3G50150.1 427 1e-118
Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1 392 4e-108
> Ahg323593 jgi|Araly1|323593|fgenesh1_pm.C_scaffold_5001137
Length=1743
Score = 2407 bits (1303), Expect = 0.0
Identities = 1553/1673 (93%), Gaps = 20/1673 (1%)
Strand=Plus/Plus
Query 98 caccaccaccaccaccacctccaccaccacggt-taggaccacgactacgactacga-ct 155
||| ||||||||||||||| |||| ||| | || ||| | ||||| || || || | |
Sbjct 68 CACAACCACCACCACCACCACCACTACC-CCGTCTAGAATTACGACGACAACCACCACCA 126
Query 156 cctaccaccaccacgacAACAACTACTACGATTACGAAAGCAACAGCCACTAGTACTACC 215
|| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 127 CC-ACCACCACCACGACAACAACTATTACGATTACGAAAGCAACATCCAC---TACTACC 182
Query 216 TGAACCATTGCCATTACGACCACGGGCGATTCCTTGGCTTACTGGACATGATGTCAAAAA 275
|| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 183 CCAATCATTGCCACTACGACCACGAGCGATTCCTTGGCTTACTGGGCATGATGTCAAAAA 242
Query 276 AGGAAAATCTTATGACAAGTTGAGAGAATACGTCGAAAATGTCCGT-AGACAAAACGAAG 334
||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 243 AGGAAAATCATACGACAAGTTGAGAGAATACGTCGAAAATGTCCGTAAG-CAAAACGAAG 301
Query 335 AATCCGAACGTGTCGTTTTACCCAAAAGTATCAGCTATGAAGACCAAAACTTGGAGAACC 394
||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 302 AATCCGAACTTGTCCTTTTAAACAAAAGTATCAGCTATCAAGACCAAAACTTGGAGAACC 361
Query 395 AGCAAGACACTCGTTCT--A-AACCTGGAATAAACGAGGTGGTCG-A---AG--GGAGCG 445
| ||||||||||||||| | || ||||||| ||||||||||||| | || ||||||
Sbjct 362 ACCAAGACACTCGTTCTGAACAATCTGGAATGAACGAGGTGGTCGAAGGGAGCAGGAGCG 421
Query 446 GGACCAAACGACTTGAGTGGGTGATCTCAATAAAAGACAAGCTCGAGCAAGCATACAGAA 505
||| ||||||||||| |||||||||||||| ||| ||||||| || ||||||| |||
Sbjct 422 GGAGTAAACGACTTGAATGGGTGATCTCAATGGAAGGCAAGCTCAAGGAAGCATATAGAG 481
Query 506 ACGATGACAGAACTAGCTGGGGCAAGCTCTGTATATACAAAGTTCCACATTACCTACATG 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ACGATGACAGAACTAGCTGGGGCAAGCTCTGTATATACAAAGTTCCACATTACCTACATG 541
Query 566 GAAACGACAAGAAGTCGTATTTCCCTCAGACTGTCTCACTTGGTCCATATCACCATGGGA 625
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 542 GAAACGACAAGAAGTCGTATTTCCCTCAGACTGTCTCGCTTGGTCCATACCACCATGGGA 601
Query 626 GACAGCAAACACAGTCCATGGAGTGCCATAAATGGCGTGCCGTCAATATGGTATTAAAAC 685
||||||||||||||| |||||||||||| |||||||||||||||| ||||||| | ||||
Sbjct 602 GACAGCAAACACAGTGCATGGAGTGCCACAAATGGCGTGCCGTCAGTATGGTACTGAAAC 661
Query 686 GTACGAACCAAGGCATTGAAGTGTTTCTTGACGCCATGATAGAGCTGGAGGAGAAGGCTC 745
||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct 662 GTACGAACCAAGGCATTGAAGTGTTTCTTGACGCCATGACAAAGCTTGAAGAGAAGGCTC 721
Query 746 GTGCTTGCTACGAAGGTTCCATTGTTTTG-AGCAGTAACGAGTTCACAGAAATGCTTCTT 804
||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||| ||
Sbjct 722 GTGCTTGCTACGAAGGTCCCATTGTTTTGGA-CAGTAACGGGTTCACAGAAATGCTTGTT 780
Query 805 CTTGATGGCTGTTTTATTCTCGAGCTCCTCCAAGGAGTCAATGAAGGATTCTTGAAACTC 864
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 CTTGATGGCTGCTTTATTCTCGAGCTCCTCCAAGGAGTCGCTGAAGGATTCTTGAAACTC 840
Query 865 GGATATGATCATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATTCAACGT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GGATATGATCATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATACAACGT 900
Query 925 GACATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GACATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTA 960
Query 985 CAACCCGGTACACAGAACCAAACTGGTTTAGTGGAATTAGTGGTTCGGTTCTTTATTCCT 1044
|| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 961 CAGCCCGATTCACAGAACAAAACTGGTTTAGTGGAATTAGTGGTTCGGTTCTTCGTTCCA 1020
Query 1045 CTAATGCCAACGGCCGAGACGTTGACCGAGAACTCGCCTCCAAGAGGCGTATCCAATGGA 1104
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1021 CTAATGCCAACGGCCGAGACGTTGGCCGAGAACTCGCCGCCAAGAGGCGTATCCAATGGC 1080
Query 1105 GAGTTGCACTGTCTTGATGTTTTCCATCGAAGTCTGCTCTTCCCAAGATCATCCGGAAAG 1164
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 GAATTGCACTGTCTTGATGTTTTCCATCGAAGTCTGCTCTTCCCAAGATCAGCCGGAAAG 1140
Query 1165 GCAAATTACTCACGCGTGGCTGACAAACACCTACAACGAGTGATACCTACCGTGACCGAA 1224
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1141 GCAAATTGCTCACGCGTGGCTGACAAACATCTACAACGAGTGATACCAACCGTGACCGAA 1200
Query 1225 CTAAGAGATGCCGGTTTTAAGTTCAAGCTAAATAAAACCGATCGGTTTTGGGATATTAAA 1284
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 CTAAGGGATGCCGGTTTTAAGTTCAAGCTAAATAAAACCGACCGGTTTTGGGATATTAAA 1260
Query 1285 TTCAGCAATGGTTACCTGGAGATACCCGGTCTACTTATCCATGATGGTACCAAATCTCTA 1344
|||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1261 TTCAGCAACGGTTATCTAGAGATACCCAGTCTACTTATCCATGATGGTACCAAATCTCTC 1320
Query 1345 TTCTTGAATCTCATTGCTTTCGAGCAGTGTCATATCGAGTCGAGCAATGATATAACATCC 1404
|||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 TTCTTGAATCTCATAGCTTTTGAGCAGTGTCATCTCGAGTCGAGCAATGATATAACATCC 1380
Query 1405 TACATAATATTTATGGACAATTTAATAGATTCTCCTGAAGATATTAGTTATTTGCATCAC 1464
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TACATAATTTTTATGGACAATTTAATAGATTCTCCTGAAGATATTAGTTATTTGCATCAC 1440
Query 1465 TGTGGTATTATTGAGCACTCGCTAGGAAGTAATTCTGAAGTTGCGGATATGTTCAACCAG 1524
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CGTGGTATTATTGAGCACTCTCTAGGAAGTAATTCTGAAGTTGCGGATATGTTCAACCAG 1500
Query 1525 TTATGTCAGGAAGTGGTTTTCGACACCAAAGATATTTATCTATCTCAATTGTTGATTGAG 1584
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1501 TTATGTCAGGAAGTGGTTTTCGACACCAAAGATATTTATCTATCCCAATTGTTGAGTGAG 1560
Query 1585 GTTCATCGCTGTTATAAACAAAACTACTCCAGGAAGTTGAATTCTTTGAAAACGACCTTG 1644
|||||||| || ||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1561 GTTCATCGTTGCTATGAACAAAACTACTCCAGGAAGTTGAATTCTTTGACAGCGACCTTG 1620
Query 1645 ATACTCAAGTACTTAGATAACCCTTGGGCATATTTGTCTTTCTTTGCTGCAGTTATTCTA 1704
| || |||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1621 AAACACAAGTACTTAGATAACCCTTGGGCGTATTTGTCTTTCATTGCGGCAGTTATTCTT 1680
Query 1705 CTAATTCTTACATTCTCTCAAAGTTATTTTGCTGCTTATGCTTATTTTAATCC 1757
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CTAATTCTTACATTATCTCAAAGTTATTTTGCTGCTTATGCTTATTTTAATCC 1733
> Ahg485374 jgi|Araly1|485374|fgenesh2_kg.5__1366__AT3G50170.1
Length=1771
Score = 473 bits (256), Expect = 1e-132
Identities = 505/623 (81%), Gaps = 25/623 (4%)
Strand=Plus/Plus
Query 463 TGGGTGATCTCAATAAAAGACAAGCTCGAGCAAGCATACAGAAACGATGACAGAACTAGC 522
|||||||||||||||| ||||||| ||||||||||| | ||| |||| |||| | | |
Sbjct 315 TGGGTGATCTCAATAAGAGACAAGGTCGAGCAAGCACATAGAGACGACGACACAGCAATT 374
Query 523 TGGGGCAAGCTCTGTATATACAAAGTTCCACATTACCTACATGGA-AACGACAAGAAGTC 581
||||| |||||||| || |||| ||||||||||||||| | || ||||||||||||||
Sbjct 375 TGGGGAAAGCTCTGCATCTACAGAGTTCCACATTACCT-GAAAGAGAACGACAAGAAGTC 433
Query 582 GTATTTCCCTCAGACTGTCTCACTTGGTCCATATCACCATGGGAGACAGCAAACACAGTC 641
||| ||||||||||| || || |||||||| || |||||||| | | ||| | | | |
Sbjct 434 GTACTTCCCTCAGACCGTTTCGCTTGGTCCGTACCACCATGGTAAAAAGC-GTCTCCGGC 492
Query 642 C-ATGGAGTGCCATAAATGGCGTGCCGTCAATATGGTATTAAAACGTACGAACCAAG-GC 699
| |||||| |||| || ||||| || ||||||| ||| | |||||| || | || ||
Sbjct 493 CTATGGAGCGCCACAAGTGGCGCGCGGTCAATAAGGTCCTGAAACGTTTAAAGC-AGCGC 551
Query 700 ATTGAAGTGT-TTCTTGACGCCATGATAGAGCTGGAGGAGAAGGCTCGTGCTTGCTACGA 758
|| ||| ||| | | | | ||||||| |||||| || |||||||||||||||||||||||
Sbjct 552 ATAGAAATGTATAC-TAATGCCATGAGAGAGCTTGAAGAGAAGGCTCGTGCTTGCTACGA 610
Query 759 AGGTTCCATT-GTTTTGAGCAGTAACGAGTTCACAGAAATGCTTCTTCTTGATGGCTGTT 817
|||| ||||| |||| ||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 611 AGGTCCCATTAGTTT-GAGCAGTAATGAGTTCACTGAAATGCTTGTTCTTGATGGCTGTT 669
Query 818 TTATTCTCGAGCTCCTCCAAGG-AGTCAAT-GAAGGATT--CTTGAAACTCGGATATGAT 873
|| ||||||||||| || | || | | | |||||||| | |||| | |||||||
Sbjct 670 TTGTTCTCGAGCTCTTC-AGGGGAA-CTGTTGAAGGATTTACC-GAAA-TAGGATATGCG 725
Query 874 CATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATTCAACGTGACATGATA 933
| |||||||| |||||||| | ||||||| |||||||||||||||||| |||||||||
Sbjct 726 CGCAACGATCCGGTTTTCGCAATGCGAGGATTGATGCATTCGATTCAACGAGACATGATA 785
Query 934 ATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTACAACCCGGT 993
||||||||||||||||||||| ||||||| ||| ||||||| |||||||||| | |||
Sbjct 786 ATGCTGGAAAATCAACTTCCTCTGTTCGTTCTCGACCGGTTGCTAGAGTTACAGCTTGGT 845
Query 994 ACACAGAACCAAACTGGTTTAGTGG-A-AT-TAG-TGGTTCGGTTCTTT-ATTCCTCTAA 1048
|||||||||||||| ||| |||||| | || ||| || || ||||||| | || ||||
Sbjct 846 ACACAGAACCAAACCGGTATAGTGGCACATGTAGCTG-TTAAGTTCTTTGAC-CCGCTAA 903
Query 1049 TGCCAACGGCCGAGACGTTGACC 1071
||||||||| ||| |||| |||
Sbjct 904 TGCCAACGGGAGAGGCGTTAACC 926
> Ahg485373 jgi|Araly1|485373|fgenesh2_kg.5__1365__AT3G50150.1
Length=1586
Score = 427 bits (231), Expect = 1e-118
Identities = 504/631 (80%), Gaps = 38/631 (6%)
Strand=Plus/Plus
Query 463 TGGGTGATCTCAATAAAAGACAAGCTCGAGCAAGCA-TACAGAAACGATGAC-AGAACTA 520
||||||||||| || || |||||| | ||||||||| | ||| |||||| | | || |
Sbjct 223 TGGGTGATCTCGATCAAGGACAAGATGGAGCAAGCACT-TAGATACGATG-CAACAAATT 280
Query 521 GCTGGGGCAAGCTCTGTATATACAAAGTTCCAC-ATTACCTACATGGA-AACGACAAGAA 578
|||||| ||||||||||| |||| |||||| | ||| || || || |||||||||||
Sbjct 281 GCTGGGAAAAGCTCTGTATCTACAGAGTTCC-CTTTTATCTTCA-AGAGAACGACAAGAA 338
Query 579 GTCGTATTTCCCTCAGACTGTCTC-ACTTGGTCCATATCACCATGGGAGACAGCAA-A-C 635
||| || || ||||| |||||||| | |||||||||| |||||| || | || || | |
Sbjct 339 GTCTTACTTACCTCAAACTGTCTCTA-TTGGTCCATACCACCAT-GG-CA-AGGAACATC 394
Query 636 -ACAGTCCATGGAGTGCCATAAATGGCGTGCCGTCAATATGGT-ATTAAAACGTACGAA- 692
| | |||||||| |||| || ||||| |||||||||||||| | | |||||| ||
Sbjct 395 TCCTGCCCATGGAGCGCCACAAGTGGCGGGCCGTCAATATGGTCA-TGGCACGTACCAAG 453
Query 693 C-CAAGGCATTGAAGTGTTTCTTGACGCCATGATAGAGCTGGAGGAGAAGGCTCGTGCTT 751
| ||| ||| ||| ||| | |||||||||||| |||||| |||||| ||||||||||||
Sbjct 454 CACAA--CATCGAAATGTATATTGACGCCATGAAAGAGCTCGAGGAGGAGGCTCGTGCTT 511
Query 752 GCTACGAAGGTTCCATTGTTTTG-AG--CAGTAACGAGTTCACAGAAATGCTTCTTCTTG 808
||||| ||||| |||||| | || || ||||| |||||||| ||||||||| ||||||
Sbjct 512 GCTACCAAGGTCCCATTGATATGAAGAATAGTAATGAGTTCACCGAAATGCTTGTTCTTG 571
Query 809 ATGGCTGTTTTATTCTCGAGCTCCTCCAA-GGAGTCA-ATGAAGGATTCTTGAAACTCGG 866
|||||||||| |||||||||| || ||| ||| | | | |||||||| |||| ||||
Sbjct 572 ATGGCTGTTTCGTTCTCGAGCT-CTTCAAGGGAAT-AGCTCAAGGATTCCAGAAAATCGG 629
Query 867 ATATG-ATCATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATTCAACGTG 925
||||| | || |||||||| |||||||| ||||| | ||||||||||||||||||||
Sbjct 630 ATATGCA-CAAAACGATCCGGTTTTCGCTAAGCGAGGGTTGATGCATTCGATTCAACGTG 688
Query 926 ACATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTAC 985
||||||||||||||||||| ||||||||| ||||| | ||| |||||||||||| | |||
Sbjct 689 ACATGATAATGCTGGAAAACCAACTTCCTCTGTTCATTCTCGACCGGTTATTAGGGCTAC 748
Query 986 AACCCGGTACACAGAACCAAACTGGTTTAGTGG-A-AT-TAG-TGGTTCGGTTCTTTATT 1041
| |||||||||| ||||||||| ||| |||||| | || | | || ||| |||||| |
Sbjct 749 AGCCCGGTACACCGAACCAAACCGGTATAGTGGCAGATGTTGCTG-TTCAGTTCTTCAAA 807
Query 1042 CCTCTAATGCCAACG-GCCGAGACGTTGACC 1071
| ||||||||||| || ||| || |||||
Sbjct 808 ACACTAATGCCAACAAGC-GAGGCGCTGACC 837
> Ahg485372 jgi|Araly1|485372|fgenesh2_kg.5__1364__AT3G50140.1
Length=1463
Score = 392 bits (212), Expect = 4e-108
Identities = 357/425 (84%), Gaps = 17/425 (4%)
Strand=Plus/Plus
Query 641 CCATGGAGTGCCATAAATGGCGTGCCGTCAATATGGT-ATTAAAACGTACGAACCAAGGC 699
||||||| | || ||||||||||| ||||||||||| | | |||||||| || ||||||
Sbjct 385 CCATGGACTATCACAAATGGCGTGCGGTCAATATGGTCA-TGAAACGTACCAAGCAAGGC 443
Query 700 ATTGAAGTGTTTCTTGACGCCATGATAGAGCTGGAGGAGAAGGCTCGTGCTTGCTACGAA 759
|| | | ||| | |||||||||||| |||||| || |||| ||||||| |||||||| ||
Sbjct 444 ATCGGATTGTATATTGACGCCATGAAAGAGCTCGAAGAGAGGGCTCGTTCTTGCTACAAA 503
Query 760 GGTTC-CATTGTTTTGAGCAGTAACGAGTTCACAGAAATGCTTCTTCTTGATGGCTGTTT 818
|| || |||| ||||||||||||| ||||||| ||||||| |||||||||| |||||
Sbjct 504 GG-TCGTATTGGTTTGAGCAGTAACAAGTTCACCCAAATGCTAGTTCTTGATGGTTGTTT 562
Query 819 TATTCTCGAGCTCCTCCA-AGGAGTCAATGAAGGATTCTTGAAACTCGGATATGATC-AT 876
| ||||||| || || || ||||| | ||||||||||||||||||| ||||| ||| |
Sbjct 563 TGTTCTCGATCT-CTTCAGAGGAGCCTATGAAGGATTCTTGAAACTTGGATACAATCGA- 620
Query 877 AACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATTCAACGTGACATGATAATG 936
|||||||| ||||| || | |||||||||||||||||||||| |||||||||| |||||
Sbjct 621 AACGATCCCGTTTTTGCCATGCGAGGATCGATGCATTCGATTCGACGTGACATGCTAATG 680
Query 937 CTGGAAAATCAACTTCCTTTGTTCGTACTCAA-CCGGTTATTAGAGTTACAACCCGGTAC 995
||||||||||||||||||||||| || || || ||||||||||||| |||||| ||||||
Sbjct 681 CTGGAAAATCAACTTCCTTTGTTTGT-CTTAAACCGGTTATTAGAGCTACAACTCGGTAC 739
Query 996 ACAGA-ACCAAACTGGTTTAGTGG-A-A-TTAGTGGTTCGGTTCTTTATTCC-TCTAATG 1050
||| | ||||||| |||||||||| | | |||| |||||||||||| | ||| | | |||
Sbjct 740 ACA-ATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTCAATCCGT-TGATG 797
Query 1051 CCAAC 1055
|||||
Sbjct 798 CCAAC 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5