BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50210.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485377 jgi|Araly1|485377|fgenesh2_kg.5__1369__AT3G50210.3 1561 0.0
Ahg494969 jgi|Araly1|494969|fgenesh2_kg.8__785__AT3G49620.1 863 0.0
Ahg485319 jgi|Araly1|485319|fgenesh2_kg.5__1311__AT3G49620.1 863 0.0
Ahg348065 jgi|Araly1|348065|fgenesh1_pg.C_scaffold_5001457 760 0.0
> Ahg485377 jgi|Araly1|485377|fgenesh2_kg.5__1369__AT3G50210.3
Length=1037
Score = 1561 bits (845), Expect = 0.0
Identities = 976/1040 (94%), Gaps = 6/1040 (1%)
Strand=Plus/Plus
Query 214 AGAGAGAGAAATGGCGACGGACTTCAAG-TCTTTACCAGTCATCGACATCTCTCGTTTAC 272
||||||||| ||||| ||||||||| || |||||||||||||||||||| |||| | ||
Sbjct 1 AGAGAGAGAGATGGCAACGGACTTC-AGATCTTTACCAGTCATCGACATATCTCCTCTAT 59
Query 273 T-CCTCAAGTGTGATGATCCCGACATGGCAGAGGATGTCGGTGTGGCCGAGGTTGTCCAG 331
| | |||||||||||||||||||||||| || |||| ||| |||||||| ||||||| |
Sbjct 60 TGGC-CAAGTGTGATGATCCCGACATGGCTGATGATGCCGGCGTGGCCGATGTTGTCCGG 118
Query 332 CAACTGGATAAAGCTTGTCGGGACGCCGGATTCTTCTACGTGATAGGCCATGGAATATCA 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 CAACTGGATAAAGCTTGTCGGGACGCCGGATTCTTCTACGTGATAGGCCATGGAATTTCG 178
Query 392 GAGGA-TGTTATTAACAAGGTTAGAGAGATCACTCGTGAGTTCTTTAAGCTTCCTTATGA 450
|| || |||||| || || ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 179 GA-GAGTGTTATGAATAAAGTTAGGGAGATCACTCGTGGGTTCTTTAAGCTTCCTTATGA 237
Query 451 AGAGAAACTTAAAATCAAAATGACTCCAGCTGCTGGATACAGAGGATATCAGAGAATTGG 510
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAAAAACTTAAGATCAAGATGACTCCAGCTGCTGGATACAGAGGATATCAGAGAATTGG 297
Query 511 AGAAAATGTGACCAAAGGAATACCAGATATTCATGAAGCCATTGATTGTTACAGAGAGAT 570
||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 AGAAAATGTAACCAAGGGTATACCAGATATTCACGAAGCCATTGATTGTTACAGAGAGAT 357
Query 571 TAAGCAGGGGAAGTATGGGGATATAGGCAAAGTTATGGAAGGGCCAAACCAGTGGCCAGA 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TAAGCAGGGGAAGTATGGGGATATAGGCAAAGTTATGGAAGGGCCAAACCAGTGGCCAGA 417
Query 631 GAATCCTCAGGAGTTTAAAGAGTTGATGGAGGAGTATATTAAGCTATGTACAGATCTTTC 690
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAATCCTCAAGAGTTTAAAGAATTGATGGAGGAGTATATTAAGCTATGTACAGATCTTTC 477
Query 691 TAGAAAGATTTTGAGAGGAATCTCCTTAGCTCTTGCTGGATCACCTTATGAGTTCGAGGG 750
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 478 TAGAAAGATCTTGAGAGGAATCTCCTTAGCTCTTACTGGATCACCTTATGAGTTTGAGGG 537
Query 751 AAAGATGGCTGGTGATCCTTTTTGGGTGATGCGTCTTATTGGTTATCCAGGTGCTGAGTT 810
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 AAAGATGGCTGGTGACCCTTTTTGGGTGATGCGTCTTATTGGTTATCCAGGTGCTCCCTT 597
Query 811 CACAAATGGCCAACCTGAAAATGATATTGGATGTGGAGCTCACACTGACTATGGCTTGTT 870
| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 CGCAAATGGCCAACCCGAAAATGATATCGGATGTGGAGCTCACACTGACTATGGCTTGTT 657
Query 871 AACTCTTGTGAATCAAGATGATGACAAAACTGCTCTTCAGGTGAGAAACTTGGGCGGTGA 930
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 AACTCTTGTAAATCAAGACGATGACAAAACTGCTCTTCAGGTGAGAAACTTGGGCGGCGA 717
Query 931 GTGGATATCAGCCATTCCAATCCCTGGATCGTTTGTTTGCAACATCGGTGACATGTTAAA 990
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 TTGGATATCAGCCGTTCCAATCCCTGGATCGTTTGTTTGCAACATCGGCGACATGTTAAA 777
Query 991 GATACTTTCAAACGGAGTATACGAATCCACACTTCATAGAGTGATCAATAACTCTCCTCA 1050
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 GATACTTTCAAACGGAGTATACGAATCGACACTTCATAGAGTGATCAATAACTCTCCTCT 837
Query 1051 ATACCGTGTTTGTGTCGCATTCTTCTATGAGACTAACTTCGACGCGGTGGTGGAGCCATT 1110
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 838 ATACCGTGTCTGTGTCGCATTCTTCTATGAGACTAATTTCGACGCGGTAGTGGAGCCATT 897
Query 1111 GGATATATGTAAACAGAAGTACCCGGGAGGGAGAGGAGGATGCCAAGTTTTCAAAAGAGC 1170
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||
Sbjct 898 GGATATATGTAAACAGAAGTACCCTGCAGGGAGAGGAGGATCCCAAGTTTTCAAAAGGGC 957
Query 1171 TGTGTATGGAGAGCATCTCGTAAGTAAAGTCCAGACCAACTTTGCTATGTAATGGAAGGC 1230
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGTCTACGGAGAGCATCTCGTTAGTAAAGTCCAGACCAACTTTGCTATGTAATGGAAGGC 1017
Query 1231 AGATCTCTCTCTCCTTCTTT 1250
||||||||||| ||||||||
Sbjct 1018 AGATCTCTCTCGCCTTCTTT 1037
> Ahg494969 jgi|Araly1|494969|fgenesh2_kg.8__785__AT3G49620.1
Length=1187
Score = 863 bits (467), Expect = 0.0
Identities = 849/1027 (83%), Gaps = 51/1027 (5%)
Strand=Plus/Plus
Query 221 GAAATGGCGAC-G--GACTTCAAGT--CT-TTACCAGTCATCGACATCTCTCGTTTACT- 273
||||||| ||| | |||||||| | || ||||||| ||||||||| || ||||||
Sbjct 108 GAAATGGTGACTGCAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCTTTACTG 167
Query 274 CCTCAAGTGTGATGATCCCGACATGGC-AGAGGATGTCGGTGTGGCCGAGGTTGTCCAGC 332
| ||| ||||||||| ||||||||| | |||||| ||| || || || |||||| |
Sbjct 168 GC-CAAATGTGATGATTTCGACATGGCTA-AGGATGCCGGGGTTGCGGAAGTTGTCAAAA 225
Query 333 AACTGGATAAAGCTTGTCGGGACGCCGGATTCTTCTACGTGATAGGCCATGGAATATCAG 392
|||| || | || |||||||||| |||||||||||||||| | || ||||||||||| |
Sbjct 226 AACTAGACAGGGCATGTCGGGACGTCGGATTCTTCTACGTGGTTGGTCATGGAATATCGG 285
Query 393 AGGATGTTATTAACAAGGTTAGAGAGATCACTCGTGAGTTCTTT-AAGCTTCCTTATGAA 451
| ||| |||| || ||||| |||||| | || | | | || ||| ||||||||||||||
Sbjct 286 ATGATCTTATAAAGAAGGTGAGAGAGGTGACGCATCAATT-TTTCGAGCTTCCTTATGAA 344
Query 452 GAGAAACTTAAAATCAAAATGACTCCAGCTGCTGGATACAGAGGATATCAGAGAATTGGA 511
||||||||||| ||||| || |||||||||| ||| ||||||||||||||||||||||||
Sbjct 345 GAGAAACTTAAGATCAAGATTACTCCAGCTGGTGGTTACAGAGGATATCAGAGAATTGGA 404
Query 512 GAAAATGTGACCAA--AGGAATACCAGATATTCATGAAGCCATTGATTGTTACAGAGAGA 569
| |||| | | ||| |||| || |||||| || ||||||||||||||||||||||||
Sbjct 405 GTAAATTTTA-CAAGTGGGAA-ACAAGATATGCACGAAGCCATTGATTGTTACAGAGAG- 461
Query 570 TT-AAGCAGGGGAAGTATGGGGATATAGGCAAA-GT-TATGGAAGGGCCAAACCAGTGGC 626
|| ||||| |||| ||||||||| || || ||| || | |||||||| ||||||| ||||
Sbjct 462 TTCAAGCAAGGGAGGTATGGGGACATTGG-AAAGGTCT-TGGAAGGGTCAAACCATTGGC 519
Query 627 CAGAGAATCCTCAGGAGTTTAAAGAGTTGATGGAGGAGTATATTAAGCTATGTACAGATC 686
||| ||||||||| |||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 520 CAGGGAATCCTCAAGAGTACAAAGATTTGATGGAGGAGTACATTAAGCTATGCACAGATC 579
Query 687 TTTCTAGAAAGATTTTGAGAGGAATCTCCTTAGCTCTTGCTGGATCACCTTATGAGTTCG 746
|||||||||| || || || |||||||||||||| |||| ||||||||||||||||||||
Sbjct 580 TTTCTAGAAATATCTTAAGGGGAATCTCCTTAGCCCTTGGTGGATCACCTTATGAGTTCG 639
Query 747 AGGGAAAGATGGCTG-GTGATCCTTTTTGGGTGATGCGTCTTATTGGTTATCCAGGTGCT 805
||||||||||| || | || ||||||||||| |||||| | |||||||||||||||| |
Sbjct 640 AGGGAAAGATG-CTTAGCGACCCTTTTTGGGTAATGCGTATCATTGGTTATCCAGGTG-T 697
Query 806 GAGTTCACAAATGGCCAACCTGAAAATGATATTGGATGTGGAGCTCACACTGACTATGGC 865
| | | |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 698 -A----A-A-----CCAA---GAAAATGTTATTGGATGTGGAGCTCACACTGACTATGGC 743
Query 866 TTGTTAACTCTTGTGAATCAAGATGATGACAAAACTGCTCTTCAGGTGAGAAACTTGGGC 925
||||| || ||| | |||||||||||||| ||||||||||||||||||| |||| ||| |
Sbjct 744 TTGTTGACACTTATAAATCAAGATGATGATAAAACTGCTCTTCAGGTGAAAAACGTGGAC 803
Query 926 GGTGAGTGGATATCAGCCATTCCAATCCCTGGATCGTTTGTTTGCAACATCGGTGACATG 985
||||| |||||| |||| ||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 804 GGTGATTGGATACCAGCTATTCCGATCCCTGGATCGTTTATCTGCAACATCGGTGACATG 863
Query 986 TTAAAGATACTTTCAAACGGAGTATACGAATCCACACTTCATAGAGTGATCAATAACTCT 1045
|||| |||||| ||||||||||| ||| |||||||||| |||| ||| ||||| ||||||
Sbjct 864 TTAACGATACTATCAAACGGAGTTTACCAATCCACACTACATAAAGTAATCAACAACTCT 923
Query 1046 CCTCAATACCGTGTTTGTGTCGCATTCTTCTATGAGACTAACTTCGACGCGGTGGTGGAG 1105
||| |||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||
Sbjct 924 CCTAAATACCGTGTTTGTGTTGCATTCTTCTACGAGACTAACTTCGAGGCGGAGGTGGAG 983
Query 1106 CCATTGGATATATGT-AAACAGAAGTACCCGGGAGGGAGAGGAGGATGC-CAAGTTTTCA 1163
||| ||||||| | | ||| |||||||||| || ||| | || | |||||| ||
Sbjct 984 CCACTGGATATCT-TCAAAGAGAAGTACCCAAGAAA-AGAA-AC-AT-CTCAAGTTGCCA 1038
Query 1164 AAAGAGCTGTGTATGGAGAGCATCTCG-T-AAGTAAAGTCCAGACCAACTTTGCTA-TGT 1220
|||||| ||| |||||| ||||||| | | || ||||||| ||| | |||||| | | |
Sbjct 1039 AAAGAGTTGTCTATGGACAGCATCT-GATTAAC-AAAGTCCTGACTACCTTTGCAAATTT 1096
Query 1221 AATGGAA 1227
| |||||
Sbjct 1097 AGTGGAA 1103
> Ahg485319 jgi|Araly1|485319|fgenesh2_kg.5__1311__AT3G49620.1
Length=1149
Score = 863 bits (467), Expect = 0.0
Identities = 849/1027 (83%), Gaps = 51/1027 (5%)
Strand=Plus/Plus
Query 221 GAAATGGCGAC-G--GACTTCAAGT--CT-TTACCAGTCATCGACATCTCTCGTTTACT- 273
||||||| ||| | |||||||| | || ||||||| ||||||||| || ||||||
Sbjct 108 GAAATGGTGACTGCAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCTTTACTG 167
Query 274 CCTCAAGTGTGATGATCCCGACATGGC-AGAGGATGTCGGTGTGGCCGAGGTTGTCCAGC 332
| ||| ||||||||| ||||||||| | |||||| ||| || || || |||||| |
Sbjct 168 GC-CAAATGTGATGATTTCGACATGGCTA-AGGATGCCGGGGTTGCGGAAGTTGTCAAAA 225
Query 333 AACTGGATAAAGCTTGTCGGGACGCCGGATTCTTCTACGTGATAGGCCATGGAATATCAG 392
|||| || | || |||||||||| |||||||||||||||| | || ||||||||||| |
Sbjct 226 AACTAGACAGGGCATGTCGGGACGTCGGATTCTTCTACGTGGTTGGTCATGGAATATCGG 285
Query 393 AGGATGTTATTAACAAGGTTAGAGAGATCACTCGTGAGTTCTTT-AAGCTTCCTTATGAA 451
| ||| |||| || ||||| |||||| | || | | | || ||| ||||||||||||||
Sbjct 286 ATGATCTTATAAAGAAGGTGAGAGAGGTGACGCATCAATT-TTTCGAGCTTCCTTATGAA 344
Query 452 GAGAAACTTAAAATCAAAATGACTCCAGCTGCTGGATACAGAGGATATCAGAGAATTGGA 511
||||||||||| ||||| || |||||||||| ||| ||||||||||||||||||||||||
Sbjct 345 GAGAAACTTAAGATCAAGATTACTCCAGCTGGTGGTTACAGAGGATATCAGAGAATTGGA 404
Query 512 GAAAATGTGACCAA--AGGAATACCAGATATTCATGAAGCCATTGATTGTTACAGAGAGA 569
| |||| | | ||| |||| || |||||| || ||||||||||||||||||||||||
Sbjct 405 GTAAATTTTA-CAAGTGGGAA-ACAAGATATGCACGAAGCCATTGATTGTTACAGAGAG- 461
Query 570 TT-AAGCAGGGGAAGTATGGGGATATAGGCAAA-GT-TATGGAAGGGCCAAACCAGTGGC 626
|| ||||| |||| ||||||||| || || ||| || | |||||||| ||||||| ||||
Sbjct 462 TTCAAGCAAGGGAGGTATGGGGACATTGG-AAAGGTCT-TGGAAGGGTCAAACCATTGGC 519
Query 627 CAGAGAATCCTCAGGAGTTTAAAGAGTTGATGGAGGAGTATATTAAGCTATGTACAGATC 686
||| ||||||||| |||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 520 CAGGGAATCCTCAAGAGTACAAAGATTTGATGGAGGAGTACATTAAGCTATGCACAGATC 579
Query 687 TTTCTAGAAAGATTTTGAGAGGAATCTCCTTAGCTCTTGCTGGATCACCTTATGAGTTCG 746
|||||||||| || || || |||||||||||||| |||| ||||||||||||||||||||
Sbjct 580 TTTCTAGAAATATCTTAAGGGGAATCTCCTTAGCCCTTGGTGGATCACCTTATGAGTTCG 639
Query 747 AGGGAAAGATGGCTG-GTGATCCTTTTTGGGTGATGCGTCTTATTGGTTATCCAGGTGCT 805
||||||||||| || | || ||||||||||| |||||| | |||||||||||||||| |
Sbjct 640 AGGGAAAGATG-CTTAGCGACCCTTTTTGGGTAATGCGTATCATTGGTTATCCAGGTG-T 697
Query 806 GAGTTCACAAATGGCCAACCTGAAAATGATATTGGATGTGGAGCTCACACTGACTATGGC 865
| | | |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 698 -A----A-A-----CCAA---GAAAATGTTATTGGATGTGGAGCTCACACTGACTATGGC 743
Query 866 TTGTTAACTCTTGTGAATCAAGATGATGACAAAACTGCTCTTCAGGTGAGAAACTTGGGC 925
||||| || ||| | |||||||||||||| ||||||||||||||||||| |||| ||| |
Sbjct 744 TTGTTGACACTTATAAATCAAGATGATGATAAAACTGCTCTTCAGGTGAAAAACGTGGAC 803
Query 926 GGTGAGTGGATATCAGCCATTCCAATCCCTGGATCGTTTGTTTGCAACATCGGTGACATG 985
||||| |||||| |||| ||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 804 GGTGATTGGATACCAGCTATTCCGATCCCTGGATCGTTTATCTGCAACATCGGTGACATG 863
Query 986 TTAAAGATACTTTCAAACGGAGTATACGAATCCACACTTCATAGAGTGATCAATAACTCT 1045
|||| |||||| ||||||||||| ||| |||||||||| |||| ||| ||||| ||||||
Sbjct 864 TTAACGATACTATCAAACGGAGTTTACCAATCCACACTACATAAAGTAATCAACAACTCT 923
Query 1046 CCTCAATACCGTGTTTGTGTCGCATTCTTCTATGAGACTAACTTCGACGCGGTGGTGGAG 1105
||| |||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||
Sbjct 924 CCTAAATACCGTGTTTGTGTTGCATTCTTCTACGAGACTAACTTCGAGGCGGAGGTGGAG 983
Query 1106 CCATTGGATATATGT-AAACAGAAGTACCCGGGAGGGAGAGGAGGATGC-CAAGTTTTCA 1163
||| ||||||| | | ||| |||||||||| || ||| | || | |||||| ||
Sbjct 984 CCACTGGATATCT-TCAAAGAGAAGTACCCAAGAAA-AGAA-AC-AT-CTCAAGTTGCCA 1038
Query 1164 AAAGAGCTGTGTATGGAGAGCATCTCG-T-AAGTAAAGTCCAGACCAACTTTGCTA-TGT 1220
|||||| ||| |||||| ||||||| | | || ||||||| ||| | |||||| | | |
Sbjct 1039 AAAGAGTTGTCTATGGACAGCATCT-GATTAAC-AAAGTCCTGACTACCTTTGCAAATTT 1096
Query 1221 AATGGAA 1227
| |||||
Sbjct 1097 AGTGGAA 1103
> Ahg348065 jgi|Araly1|348065|fgenesh1_pg.C_scaffold_5001457
Length=1035
Score = 760 bits (411), Expect = 0.0
Identities = 714/855 (84%), Gaps = 41/855 (5%)
Strand=Plus/Plus
Query 373 GATAGGCCATGGAATATCAGAGGATGTTATTAACAAGGTTAGAGAGATCA-CTCG--TGA 429
||| || ||||||||||| |||||| |||| || ||||| |||| ||| | ||| | |
Sbjct 184 GATTGGTCATGGAATATCGGAGGATCTTATAAAGAAGGTGAGAGTGAT-ATGTCGAATCA 242
Query 430 GTTCTTTAAGCTTCCTTATGAAGAGAAACTTAAAATCAAAATGACTCCAGCTGCTGGATA 489
|||||| ||||||||||||||||||||||||| ||||| || | ||||||||||||||
Sbjct 243 ATTCTTTGAGCTTCCTTATGAAGAGAAACTTAAGATCAAGATTAGGCCAGCTGCTGGATA 302
Query 490 CAGAGGATATCAGAGAATTGGA-GAAAATGTGACCA-AAGGAATACCAGATATTCATGAA 547
|||||||||||||||||| ||| ||| | | || | |||| || ||| || || |||
Sbjct 303 CAGAGGATATCAGAGAATGGGACTAAACT-TAACGAGTGGGAA-ACAAGACATGCACGAA 360
Query 548 GCCATTGATTGTTACAGAGAGATTAA-GCAGGGGAAGTATGGGGATATAGGCAAA-GTTA 605
|||||||||||||||| |||| |||| | | |||| ||||||||| | || ||| |||
Sbjct 361 GCCATTGATTGTTACAAAGAGTTTAATG-AAGGGACGTATGGGGACCTTGG-AAAGGTTT 418
Query 606 TGGAAGGGCCAAACCAGTGGCCAGAGAATCCTCAGGAGTTTAAAGAGTTGATGGAGGAGT 665
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 419 TGGAAGGGCCAAACCAGTGGCCAGAGAATCCTCAAGAGTACAAAGAGTTGATGGAGGAGT 478
Query 666 ATATTAAGCTATGTACAGATCTTTCTAGAAAGATTTTGAGAGGAATCTCCTTAGCTCTTG 725
|||||||||| || | ||||||||||||||| || || || |||||||||||||| ||||
Sbjct 479 ATATTAAGCTCTGCATAGATCTTTCTAGAAATATCTTAAGGGGAATCTCCTTAGCCCTTG 538
Query 726 CTGGATCACCTTATGAGTTCGAGGGAAAGATGGC-T-G-G-TGATCCTTTTTGGGTGATG 781
||||||||||||||| || ||||||||||| || | | | || ||||||||| | |||
Sbjct 539 GTGGATCACCTTATGAATTTGAGGGAAAGAT-GCTTAGAGACGACCCTTTTTGGATAATG 597
Query 782 CGTCTTATTGGTTATCCAGGTGCTGAGTTCACAAATGGCCAACCTGAAAATGATATTGGA 841
||| || ||||||||||| | | | | | ||| |||| ||||||| ||| |||
Sbjct 598 CGTATTCTTGGTTATCCA-G-G-T--G-T---AAA---CCAA---GAAAATGTTATCGGA 642
Query 842 TGTGGAGCTCACACTGACTATGGCTTGTTAACTCTTGTGAATCAAGATGATGACAAAACT 901
||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||
Sbjct 643 TGTGGAGCTCACACTGACTATGGCTTGTTGTCGCTTATAAATCAAGATGATGACAAAACT 702
Query 902 GCTCTTCAGGTGAGAAACTTGGGCGGTGAGTGGATATCAGCCATTCCAATCCCTGGATCG 961
||||||||||||||| |||||| ||| || |||| | ||| ||||| |||||||||||
Sbjct 703 GCTCTTCAGGTGAGAGACTTGGCCGGCGATTGGACACCAGTGATTCCGATCCCTGGATCA 762
Query 962 TTTGTTTGCAACATCGGTGACATGTTAAAGATACTTTCAAACGGAGTATACGAATCCACA 1021
||||| |||||||||||||||||| ||||| | ||||| |||||||| ||||||||||||
Sbjct 763 TTTGTCTGCAACATCGGTGACATGCTAAAGTTTCTTTCTAACGGAGTTTACGAATCCACA 822
Query 1022 CTTCATAGAGTGATCAATAACTCTCCTCAATACCGTGTTTGTGTCGCATTCTTCTATGAG 1081
|||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||
Sbjct 823 CTTCATAGAGTGATCAATAACTCTCCTCGATACCGTGTTTGCGTCGGATTCTTCTACGAG 882
Query 1082 ACTAACTTCGACGCGGTGGTGGAGCCATTGGATATATGT-AAACAGAAGTACCCGGGAGG 1140
||||||||| ||||||||||||||||||||||||| | | ||| |||||||||| | |
Sbjct 883 ACTAACTTCAACGCGGTGGTGGAGCCATTGGATATCT-TCAAAGAGAAGTACCCAGTAA- 940
Query 1141 GAGAGGAGGATGC-CAAGTTTTCAAAAGAGCTGTGTATGGAGAGCATCTCGTA-AGTAAA 1198
| |||| || | ||||||||||||||| ||| |||||||||||||| || | |||
Sbjct 941 -A-AGGAACAT-CTCAAGTTTTCAAAAGAATTGTCTATGGAGAGCATCTGGTTCAC-AAA 996
Query 1199 GTCCAGACCAACTTT 1213
| ||||||| ||||
Sbjct 997 CTGCAGACCACCTTT 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5