BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50220.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937856 jgi|Araly1|937856|scaffold_502047.1 1574 0.0
Ahg496878 jgi|Araly1|496878|fgenesh2_kg.8__2694__AT5G67210.1 811 0.0
> Ahg937856 jgi|Araly1|937856|scaffold_502047.1
Length=1011
Score = 1574 bits (852), Expect = 0.0
Identities = 946/992 (95%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 68 agaagaagaagaagagtgaacaatgaagaacGGATCAGGGAACACGAACACAAAACTAAT 127
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1 AGAAGAAGAAGAAGAGTGAACAATGAAGAACGGATCAGGGAACACGAACACGAAGCTAAT 60
Query 128 CCTTCTTCATCCTTACATCCAAAAACAAACGAGCACGACTCGTTTATGGCTTCTCGCTTT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCTTCATCCTTACATCCAAAAACAAACGAGCACGACTCGTTTATGGCTTCTCGCTTT 120
Query 188 CGTCTCTTTCTTCACCATAGTTTTTCTCCTCACTCTTCTCTACACTAGAGACACAATCCC 247
|||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||
Sbjct 121 CGTCTCTTTCTTCACCATCGTGTTTCTCCTAACTCTCCTCTACACTAGAGACACAATCCC 180
Query 248 TTCCAAAAACACCTCCGTCGCCGC-AGCCGTAGCTGCAGTCGTCACCGGAGGATCCAC-A 305
||||||||||||||||||||| || | ||||||| || ||||||||||||||||| || |
Sbjct 181 TTCCAAAAACACCTCCGTCGCTGCCA-CCGTAGCCGCCGTCGTCACCGGAGGATC-ACCA 238
Query 306 CCTTCAGCATCATCTCCCATCTCCAACTCCAACTTACCAACTAGTGCAATCAACGCTTTG 365
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 239 TCTTCATCATCATCTCCCATCTCCAACTCTAACTTACCAACGAGTGCAATCAACGCATTG 298
Query 366 CTTCACTACGCGTCAAGATCCAACGATAGTTTCCACATGTCTTACGGAGAGATGAAATCA 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTTCACTACGCGTCAAGATCCAACGATAGTTTCCACATGTCTTACGGAGAGATGAAATCT 358
Query 426 ATCTCTGACGTCCTCCGCCGCTGCGCTCCACCGTGTAATCTTCTCGTTTTCGGACTCACA 485
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 359 ATCTCCGACGTCCTCCGCCGCTGCGCTCCACCGTGTAATCTCCTCGTTTTCGGACTAACA 418
Query 486 CACGAGACTCTCCTTTGGAAGTCGTTAAACCACAACGGTAGAACAGTGTTCATCGAGGAG 545
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 419 CACGAGACTCTCCTTTGGAAATCGTTAAACCACAACGGTAGAACAGTCTTCATCGAGGAG 478
Query 546 AATCGTTACTACGCGGCTTACTTCGAAGAAATCCACCCGGAGATCGACGTTTTCGACGTT 605
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 479 AATCGTTACTACGCGGCTTACTTTGAAGAAATCCACCCGGAGATAGACGTTTTCGACGTT 538
Query 606 CAATACACGACAAAAGCTCACGAAGCTGGAGAGCTCGTCACCGCGGCTAAAGAAGCCGCG 665
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 539 CAATACACGACGAAAGCTCACGAGGCCGGAGAGCTCGTTACCGCGGCTAAAGAAGCCGCG 598
Query 666 GGAAACGAGTGTCGTCCTGTGCAAAATCTTCTCTTCTCAGATTGTAAATTAGGTCTCAAT 725
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 599 GGAAACGAGTGTCGTCCCGTGCAAAATCTTCTCTTCTCAGATTGTAAACTAGGTCTTAAT 658
Query 726 GATTTGCCTAATCATGTCTACGATGTTGATTGGGATGTAATCTTTGTGGACGGGCCACGT 785
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GATTTGCCTAATCACGTCTACGATGTTGATTGGGATGTAATCTTTGTGGACGGGCCACGT 718
Query 786 GGCGATGCTCACGAAGGACCGGGGAGGATGTCGTCGATTTTCACGGCGGCGGTTCTTGCT 845
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 GGCGACGCTCACGAAGGACCGGGGAGGATGTCGTCGATATTCACGGCGGCGGTTCTTGCT 778
Query 846 CGGAGCAAAAAGGGCGGGACTCCGAAGACGCATGTGTTTGTGCATGACTATTATAGAGAC 905
|| ||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct 779 CGAAGCAAAAAGGGAGGGAATCCGAAGACGCATGTGTTCGTGCATGATTATTATAGAGAC 838
Query 906 GTTGAGAGGCTTTGTGGTGATGAGTTCTTGTGCCGAGAGAATCTTGTTGAGTCTAATGAT 965
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 GTTGAGAGGCTTTGTGGTGATGAGTTCTTGTGCCGTGAGAATCTTGTTGAGTCTAATGAT 898
Query 966 TTGCTTGCACACTACGTGTTGGATAAGATGGATAAAAACAGCACAAAGTTTTGCAATGGT 1025
||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 899 TTGCTTGCACACTACGTGTTGGATAAGGTGGATAAAAACAGCACGACGTTTTGCAATGGT 958
Query 1026 CGTAAGAAACGTTCGGTTTCGTCTTTGTCTTA 1057
||||||||||||||||||||||||| ||||||
Sbjct 959 CGTAAGAAACGTTCGGTTTCGTCTTAGTCTTA 990
> Ahg496878 jgi|Araly1|496878|fgenesh2_kg.8__2694__AT5G67210.1
Length=1199
Score = 811 bits (439), Expect = 0.0
Identities = 795/961 (83%), Gaps = 48/961 (5%)
Strand=Plus/Plus
Query 104 AGGGAACACGAACACAAAACTAATCCTTCTTCATCCTTACATCCAAAAACAAACGAGCAC 163
||||||||| ||||| || || || ||| ||||||| ||||| ||||||||||| |||||
Sbjct 77 AGGGAACACAAACACGAAGCTCATACTTGTTCATCCATACATTCAAAAACAAACAAGCAC 136
Query 164 GACTCGTTTATGGCTTCTCGCTTTCGTCTCTTTCTTCACCATAGTTTTTCTCCTCACTCT 223
| |||| ||||||||||||||||||||||||||||||| || | ||||||| | |||||
Sbjct 137 AAATCGTCTATGGCTTCTCGCTTTCGTCTCTTTCTTCACAATCGCTTTTCTCTTAACTCT 196
Query 224 TCTCTACACTAGAGACAC-A--ATCCCTTCCAAAAACACCTCCGTCGCCGCAGCCGTAGC 280
||||||||| | ||| | | |||||||| ||||||| || | || | || |||| |
Sbjct 197 TCTCTACACCACCGACTCTATCATCCCTTCTAAAAACAACT-C--CG-C-CA-CCGT--C 248
Query 281 TGCAGTCGTCACCGGAGGATCCACACCTTCAGCATCATCTCC-CATCTCC-A--ACTCCA 336
| | | | || | | | || | | || || | ||||| | |||| | ||| |
Sbjct 249 T-C---C-T--CC-GCCG-T-CA-A-C-TCCGC--CGTCTCCACCGCTCCGATCACT-C- 291
Query 337 ACTTACCAACTAG-TG-CAATCAACGCTTTGCTTCACTACGCGTCAAGATCCAACGATAG 394
| || ||||| || | | ||||| || |||||||||||||||| ||||| ||||| ||
Sbjct 292 AGTTGCCAAC-AGCAGTC-ATCAATGCAATGCTTCACTACGCGTCGAGATCTAACGACAG 349
Query 395 TTTCCACATGTCTTACGGAGAGATGAAATCAATCTCTGACGTCCTCCGCCGCTGCGCTCC 454
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 350 CTTCCACATGTCATACGGAGAGATGAAATCAATCTCCGACGTCCTCCGCCGCTGCTCTCC 409
Query 455 ACCGTGTAATCTTCTCGTTTTCGGACTCACACACGAGACTCTCCTTTGGAAGTCGTTAAA 514
||||||||||| || || ||||| || |||||||| || || || ||||| ||| ||||
Sbjct 410 GCCGTGTAATCTCCTGGTCTTCGGCCTAACACACGAAACCCTTCTCTGGAAATCGCTAAA 469
Query 515 CCACAACGGTA-GAACAGTGTTCATCGAGGAGAATCGTTACTACGCGGCTTACTTCGAAG 573
||||||||| | | || || |||||||| ||||||||||||||||| |||||||||||||
Sbjct 470 CCACAACGG-ACGTACGGTTTTCATCGAAGAGAATCGTTACTACGCAGCTTACTTCGAAG 528
Query 574 AAATCCACCCGGAGATCGACGTTTTCGACGTTCAATACACGACAAAAGCTCACGAAGCTG 633
||||||||||||||||||| || ||||| ||||| |||||||| ||||| | || || |
Sbjct 529 AAATCCACCCGGAGATCGAAGTCTTCGATGTTCAGTACACGACGAAAGCACGTGAGGC-G 587
Query 634 -GAGAGCTCGTCACCGCGGCTAAAGAAGCCGCG-GGAAACGAGTGTCGTCCTGTGCAAAA 691
| ||||| || | |||| ||||||||| ||| | |||||||||||||| ||||| ||
Sbjct 588 CGTGAGCTAGTGTCGGCGGTTAAAGAAGCGGCGACG-AACGAGTGTCGTCCGGTGCAGAA 646
Query 692 TCTTCTCTTCTCAGATTGTAAATTAGGTCTCAATGATTTGCCTAATCATGTCTACGATGT 751
|||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 647 TCTTCTCTTCTCCGATTGTAAATTAGGACTCAATGATTTGCCGAATCATGTATACGATGT 706
Query 752 TGATTGGGATGTAATCTTTGTGGACGGGCCACGTGGCGATGCT-CACGAAGGACCGGGGA 810
||| |||||||| ||||| || || || ||||||||||| | | | || | |||||| |
Sbjct 707 TGACTGGGATGTGATCTTAGTTGATGGACCACGTGGCGACGGTGGA-GATGTACCGGGAA 765
Query 811 GGATGTCGTCGATTTTCACGGCGGCGGTTCTTGCTCGGAGCAAAAAGGGCGGGACTCCGA 870
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 766 GGATGTCGTCGATTTTCACGGCGGCGGTTCTTGCTCGGAGTAAAAAAGGCGGGAATCCGA 825
Query 871 AGACGCATGTGTTTGTGCATGACTATTATAGAGACGTTGAGAGGCTTTGTGGTGATGAGT 930
|||||||||||||||| ||||| ||||| ||||| |||||||| ||||| || |||||||
Sbjct 826 AGACGCATGTGTTTGTTCATGATTATTACAGAGATGTTGAGAGACTTTGCGGCGATGAGT 885
Query 931 T-CTTGTGCCGAGAGAATCTTGTTGAGTCTAATGATTTGCTTGCACACTACGTGTTGGAT 989
| ||| ||||| ||||||||||| |||||||| ||| ||||||| ||||||||||||||
Sbjct 886 TTCTT-TGCCGGGAGAATCTTGTGGAGTCTAACGATATGCTTGCGCACTACGTGTTGGAG 944
Query 990 AAGATGGATAAAAACAGCACAAAGTTTTG-CAATGGTCGTAAGAAACGTTCGGTTTCGTC 1048
| |||||||||||||||||| |||| || | ||||||||||||||| || ||||| ||
Sbjct 945 AGGATGGATAAAAACAGCACGCAGTTCTGTCG-TGGTCGTAAGAAACGCTCTGTTTCTTC 1003
Query 1049 T 1049
|
Sbjct 1004 T 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5