BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50230.1
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485378 jgi|Araly1|485378|fgenesh2_kg.5__1370__AT3G50230.1 2743 0.0
Ahg496879 jgi|Araly1|496879|fgenesh2_kg.8__2695__AT5G67200.1 592 4e-168
> Ahg485378 jgi|Araly1|485378|fgenesh2_kg.5__1370__AT3G50230.1
Length=1959
Score = 2743 bits (1485), Expect = 0.0
Identities = 1820/1978 (92%), Gaps = 38/1978 (2%)
Strand=Plus/Plus
Query 20 actc-tcttct-cttc-cttctcctcctcctccgtatctccaccgc---ctctctccCGG 73
|||| |||||| | || |||||| ||||||||||||||||| |||| ||| ||||| |
Sbjct 6 ACTCTTCTTCTAC-TCTCTTCTCTTCCTCCTCCGTATCTCCGCCGCAAACTCCCTCCCAG 64
Query 74 CGACGAACTACTTCGACTCCTTCTTACCATCCGACGCCGTCGCACTTCTCTCCTTCAAAT 133
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 65 CGACGAACTACTTCGACTCCTTCTTACCTTCCGACGCCGTCGCACTTCTCTCCTTCAAAT 124
Query 134 CCACCGCTGATCTCGACAACAAGCTTCTATACTCTCTCACCGAGCCTTACGACTACTGTC 193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 125 CCACCGCTGATCTCGACAACAAGCTTCTATACTCTCTCACCGAGCCTTACGATTACTGTC 184
Query 194 AATGGCGCGGCGTCGATTGCTCTCAAGATCGCGTCGTTCGTCTTATCCTCGACGGTGTTG 253
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 185 AATGGCGCGGCGTCGACTGCTCTCAAGATCGCGTCGTTCGTCTTATCCTCGACGGCGTTG 244
Query 254 GTCTCCGGGGAAGTTTCTCACCGGAGACTCTTAGTCGTCTTGATCAGCTTCGTGTTCTTA 313
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GTCTCCGAGGACGTTTCTCACCGGAGACTCTTAGTCGTCTTGATCAGCTTCGTGTTCTTA 304
Query 314 GCCTTGAGAATAACTCAATCTCGGGTTCGATTCCTGATCTATCTCCTCTCGTCAATCTCA 373
|||||| ||||||||||||||| |||||| ||||||||||||||||| | ||||||||
Sbjct 305 GCCTTGTGAATAACTCAATCTCTGGTTCGGTTCCTGATCTATCTCCTTTAACCAATCTCA 364
Query 374 AAACCCTAACCCTAAGCAAGAATGGTTTCTCCGGTACTCTTTCTTCTTCAATTCTCTCTC 433
|||||||||||||||||||||| |||||||||||||||| ||| ||| ||||| ||||
Sbjct 365 AAACCCTAACCCTAAGCAAGAACCGTTTCTCCGGTACTCTCTCTGGTTCGATTCTTTCTC 424
Query 434 TTCGTCGGTTA-ACAGAACTTGATCTATCGTTTAACAACTTCTCCGGTGAGATTCCGTCG 492
|||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 425 TTCGCCGGTTAGTC-GAACTTGATCTATCGTTTAACAACTTCGCCGGTGAGATTCCGTCG 483
Query 493 GGGATCAATGCTCTGAGTCGACTCAGTTCTTTAAATCTCGAGTTTAATCGACTT-AACGG 551
| ||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||
Sbjct 484 GAGATCAATGCTCTGAGTCGACTCATTTCTTTAAATCTCGAGTTTAATCGA-TTCAGTGG 542
Query 552 AACTCTCCCGCCGTTAAATCTTTCTTCTCTGATTTCATTTAACGTTTCCAGTAACAACCT 611
||||||||||||| |||| ||||||| ||| || |||||||||||| ||||||| ||
Sbjct 543 TCCTCTCCCGCCGTTGAATCATTCTTCTATGACGTCGTTTAACGTTTCCGGTAACAATCT 602
Query 612 CACCGGTTTAGTTCC-GTTAACAAAGACTCTGTTACGATTCAACGCGTCTTCGTTTTCGT 670
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 603 CACCGGTTTAGTTCCGGTT-ACAACGACTCTGTTACGATTCAACGCGTCTTCGTTTTCGT 661
Query 671 CAAACCCTGGACTCTGCGGTGAGATCATTAACCGATCTTGCGGTTTACATTCTTCTTCTC 730
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 662 CAAACCCTGGACTCTGCGGTGAGATCATTAACCGATCTTGCGGTTCACGTTCTTCTTCTC 721
Query 731 CGTTCTTTGGTTCACCTAAACCAAACACCACGTCATCAACATCTTCTGCTTCTTCGTCTG 790
| ||||| |||||| ||||||||||| ||||||||| || | |||||||||||
Sbjct 722 CATTCTTCGGTTCAACTAAACCAAACGCCACGTCAT---CA-----T-CTTCTTCGTCTC 772
Query 791 AAGCACCGGTTATTCAAAGTGAACAGAACGGTGAAGCAGCGATGATTGTTCCACCGGTGG 850
|||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 773 AAGCACCGATTAGTCAAAGCG---AGAACGGTGAAGCAGCGATGATTGTTCCACCGGTGG 829
Query 851 TTAAAAAGGTTAAAAACGGTTGGTTAGTTCTTGGTTTCACCATTGGTCTCGCTTCTTTGA 910
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 830 TTAAAAAGGTTAAAAATGGTTGGTTAGTACTTGGTTTCACCATTGGTCTCGCTTCTTTGA 889
Query 911 TAGTTCTAGGTCTCTGCCTCGTCGTGTTCTCGTTGTTTATAAAAAACCGGAGAGAAGACT 970
|||| || ||||| || ||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 890 TAGTCCTCGGTCTTTGTCTCGTAGTGTTCTCGTTGTTTATGAAGAACCGGAGAGACTACG 949
Query 971 ACGATGACGTGATAATTACGCAACCTAAGCGAGAAGAAGAAAACAAAGAAATCAAGATCC 1030
|||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 950 ACGATGACGTGATAATGACGCAACCTAAACGAGAAGAAGGAAACAAAGAAATCAAAATCC 1009
Query 1031 AATTTCAAACCACTGCGCCGTCGTCG-AAAAAGCGAATCCCAAGAAACGGAGATTTGATA 1089
|||| |||||||||| ||||||| || ||||| |||||| |||||||||||||||||||
Sbjct 1010 AATTCCAAACCACTGAGCCGTCGCCGCAAAAA-CGAATCTCAAGAAACGGAGATTTGATT 1068
Query 1090 TTCTGCGGCGAaggaggaggaggaggagAAGCAATGTACACAGTTGACCAGTTGATGAGA 1149
||||||||| || |||||||||| ||| |||| ||| |||| ||||||||||||
Sbjct 1069 TTCTGCGGC----GA--CGGAGGAGGAGTAGCTGTGTATACACTTGATCAGTTGATGAGA 1122
Query 1150 GCTTCAGCAGAGCTTTTAGGAAGAGGATCAGTAGGTACAACGTATAAAGCGGTGATGGTT 1209
||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1123 GCTTCTGCGGAGCTTTTTGGAAGAGGATCAGTAGGTACGACGTATAAAGCGGTGATGGTT 1182
Query 1210 AATCAAATGATCGTGACGGTGAAGAGATTTGCTCCGTCGAAAACAGCGATTACTAGTGAT 1269
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AATCAACTGATTGTGACGGTGAAGAGATTTGCTCCGTCGAAAACAGCGATTACTAGTGAT 1242
Query 1270 TTAGAGTTTGAGAATCAGATGGAGATAGTTGGTGGACTTAAGCATCCGAATCTTGTTCCG 1329
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TTAGCGTTTGAGAATCAGATGGAGATAGTTGGTGGACTTAAGCATCCGAATCTTGTTCCG 1302
Query 1330 GTTAAAGCTTATTTCCAGTCAAATGGAGAGAGACTTGTCATCTATGAGTACCAACCTAAT 1389
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GTAAAAGCTTATTTTCAGTCAAATGGAGAGAGACTTGTCATCTATGAGTACCAACCTAAT 1362
Query 1390 GGAAGTCTCTTCAATCTTATTCATGGTTCGAGAACATCAAAGGCAAAGCCATTACATTGG 1449
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1363 GGAAGTCTCTTCAATCTTATTCATGGTTCAAGAACATCAAAAGCTAAGCCATTACATTGG 1422
Query 1450 ACATCATGTTTGAAGATAGCAGAAGATGTAGCTCAAGCATTACATTACATTCACCAATCA 1509
|||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1423 ACATCATGCTTGAAGATAGCAGAAGATGTGGCTCAAGCACTACATTATATTCACCAATCA 1482
Query 1510 TCAGCCAAATTCCATGGAAACCTTAAGTCCACTAACATCCTCCTTGGTCACGACTTTGAA 1569
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1483 TCAGGAAAATTTCATGGAAACCTCAAGTCCACTAACATCCTCCTTGGTCACGACTTCGAA 1542
Query 1570 GCTTGTGTCACAGATTATTGTTTAAGTGTCTTAACAGACTCATCTGTTCCTCCC-AATGA 1628
||||||||||||||||| ||| |||||||||||||||||||||| | ||||||| |||||
Sbjct 1543 GCTTGTGTCACAGATTACTGTCTAAGTGTCTTAACAGACTCATCAG-TCCTCCCTAATGA 1601
Query 1629 CCCGGACATCTCTTCCTATAAAGCACCAGAGATAAGGAAATCAACAGATA---GTCGTCC 1685
|||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||
Sbjct 1602 CCCGGACATCTCTTCCTACAAAGCACCAGAGGTAAGGAAATCAATAGATAGTCGTCGTCC 1661
Query 1686 CACGTCGAAATGCGATGTTTACTCGTTCGGGGTCTTCCTCTTAGAGCTATTGACCGGTAA 1745
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1662 CACGTCCAAATGCGATGTGTACTCGTTCGGGGTCTTCCTCTTAGAGCTATTGACTGGTAA 1721
Query 1746 AACCGCTTCGAGGCAACCGATTATGGAGCCAAACGATATGTTGGATTGGGTAAGAGCAAT 1805
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 AACAGCTTCAAGACAACCGATTATGGAGCCAAACGATATGTTGGATTGGGTAAGAGCAAT 1781
Query 1806 GAGGCAAGAAGAAGAAAGGTCAAAGGAAGAGAATGGGCTAGAGATGATGACTCAAACGGC 1865
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 GAGGCAAGAAGAGGAAAGGTCAAAGGAAGAGAATGGGCTAGAGATGATGACTCAAACGGC 1841
Query 1866 TTGTCTTTGCCGTGTAACATCGCCAGAGCAAAGGCCCACTATGAAAGAAGTGATCAAAAT 1925
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1842 TTGTCTTTGTCGTGCAACATCGCCAGAGCAAAGGCCGACTATGAAAGAAGTGATCAAAAT 1901
Query 1926 GATTCAAGAGATTAAGGGGAGTGTTGTGATGACTGAAGAGAACGAAAAATTCCTCTGA 1983
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1902 GATTCAAGAGATTAAGGAGAGTGTTGTGATGACTGAAGAGAACGAAACTTTCCTCTGA 1959
> Ahg496879 jgi|Araly1|496879|fgenesh2_kg.8__2695__AT5G67200.1
Length=2172
Score = 592 bits (320), Expect = 4e-168
Identities = 697/874 (80%), Gaps = 45/874 (5%)
Strand=Plus/Plus
Query 1118 AAGCAATGTACACAGTTGACCAGTTGATGAGAGCTTCAGCAGAGCTT-TTAGGAAGAGGA 1176
||| |||||||||| | || ||| | ||||||||||| || ||| || || |||||||||
Sbjct 1150 AAGGAATGTACACAATGGAGCAGCTAATGAGAGCTTCGGCGGAG-TTATTGGGAAGAGGA 1208
Query 1177 TCAGTAGGTACAACGTATAAAGCGGTGATGGTTAATCAAATGATCGTGACGGTGAAGAGA 1236
||||| || | | |||||| ||||| | | |||||| | || ||||| |||||||||
Sbjct 1209 TCAGTGGGGATTATGTATAAGGCGGTTCTTGATAATCAGCTTATTGTGACAGTGAAGAGA 1268
Query 1237 TTTGCTC-CGTCGAAAACAGCGATTACTAGTGATTTAGAGTTTGAGAATCAGATGGAGAT 1295
| | | || | ||||| ||| | || ||||| || |||||||||||| ||||||||
Sbjct 1269 CTAG-ACGCGGCTAAAACGGCGGTGACGAGTGAAGAAGCGTTTGAGAATCATATGGAGAT 1327
Query 1296 AGTTGGTGGACTTAAG-CATC-CGAATCTTGTTCCGGTTAAAGCTTA-TTTCCAGTCAAA 1352
|||||||||||| || || | | |||||||| || ||| |||||| ||| || |||||
Sbjct 1328 TGTTGGTGGACTT-AGACA-CACCAATCTTGTCCCCATTAGAGCTTACTTT-CAATCAAA 1384
Query 1353 TGGAGAGAGACTTGTCATCTATGAGTACCAACCTAATGGAAGTC-TCTTCAATCTTATTC 1411
||||||||||| | |||||||| || || |||||||| || | | |||||||| ||||
Sbjct 1385 CGGAGAGAGACTCATTATCTATGATTATCATCCTAATGGTAG-CTTATTCAATCTCATTC 1443
Query 1412 ATGGTTCGAGAACATCAAAG-GCAAAGCCATTACATTGGACATCATGTTTGAAGATAGCA 1470
| ||||| ||| | || ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1444 ACGGTTCAAGATCTTC-AAGAGCAAAGCCATTACATTGGACATCATGTTTAAAGATTGCA 1502
Query 1471 GAAGATGTAGCTCAAG-CATTACATTACATTCACCAA---TCATCAGCCAA-ATTCCATG 1525
|||||||||||||||| | ||| ||||||| |||||| |||||||| | | ||||||
Sbjct 1503 GAAGATGTAGCTCAAGGC-TTATATTACATACACCAAACATCATCAGC-ATTAGTCCATG 1560
Query 1526 GAAACCTTAAGTCCACTAACATCCTCCTT-GGTCACGACTTTGAAGCTTGTGTCACAGAT 1584
||||||| || ||||| ||||||||| || || || ||||||||||| ||| | ||||||
Sbjct 1561 GAAACCTAAAATCCACAAACATCCTC-TTAGGACAAGACTTTGAAGCCTGTTTAACAGAT 1619
Query 1585 TATTGTTTAAGTGTCTTAACAGACTCATC-TGTTCCTC-CCA-ATGACCCGGACATC-TC 1640
|| || | ||||||||||||||||| || | | | || || |||| || ||| || ||
Sbjct 1620 TACTGCCTCAGTGTCTTAACAGACTCTTCATCTGCTTCACCTGATGATCCTGAC-TCATC 1678
Query 1641 TTCCTATAAAGCACCAGAGATAAGGAAATCAACA-GATAGTCGTCCCACGTCGAAATGCG 1699
|||||| ||||| || ||||| || |||||| || | ||| | | || || ||||| |
Sbjct 1679 TTCCTACAAAGCTCCTGAGATCAGAAAATCATCACG-TAGAC--CA-ACTTCCAAATGTG 1734
Query 1700 ATGTTTACTCGTTCGGGGTCTTCCTCTTAGAGCTATTGACCGGTAA-AACCGCTTCGAGG 1758
||||||| ||||| || ||||| |||| ||||| ||||| ||||| || || ||||||
Sbjct 1735 ATGTTTATTCGTTTGGTGTCTTGATCTTTGAGCTTTTGACTGGTAAGAAT-GCATCGAGG 1793
Query 1759 CAACCGATTATGGAGCCAAACGATATG-TTGGATTGGGTAAGAGCAATGAG-GCAAGAAG 1816
|| ||| |||||| ||| | |||||| ||| ||||||| ||||||||||| | ||||||
Sbjct 1794 CATCCGTTTATGGCGCCTCATGATATGCTTG-ATTGGGTTAGAGCAATGAGAG-AAGAAG 1851
Query 1817 AAGAAAGGTCAAAGGAAGAGAATGGGCTAGAGATGATGACTCAAACGGCTTGTCTTTGCC 1876
||||| || || ||| || ||| |||| | |||||||||| |||| |||||||||||||
Sbjct 1852 AAGAA-GG--AACGGAGGATAATAGGCTGGGGATGATGACTGAAACAGCTTGTCTTTGCC 1908
Query 1877 GTGTAACATCGCCAGAGCAAAGGCCCACTATGAAAGAAGTGATCAAAATGATTCAAGAGA 1936
|||| ||||| ||||||||||| || || |||| | ||||||| || |||||||| ||||
Sbjct 1909 GTGTGACATCACCAGAGCAAAGACCAACGATGAGACAAGTGATTAAGATGATTCAGGAGA 1968
Query 1937 TTAAGGGGAGTGTTGTGATGACTGAAGAGAACGA 1970
|||||| ||||||| || | |||||||||||||
Sbjct 1969 TTAAGGAGAGTGTTATG--G-CTGAAGAGAACGA 1999
Score = 448 bits (242), Expect = 1e-124
Identities = 696/904 (77%), Gaps = 76/904 (8%)
Strand=Plus/Plus
Query 82 TACTTCGACTCCTT-CTTACCATCCGACGCCGTCGCACTT-CTCTCCTTCAAATCCACCG 139
|||||| ||||||| ||| || |||||||| || || || ||||| |||||||||||||
Sbjct 75 TACTTCAACTCCTTACTT-CCTTCCGACGCTGTTGC-TTTACTCTCTTTCAAATCCACCG 132
Query 140 CTGATCTCGACAACAAGCTTC-TATACTCTCTCACCGAGCCTTACGACTACTGTCAATGG 198
| |||||||||||||||| || | || || |||||||||| |||||||||||||||||||
Sbjct 133 CCGATCTCGACAACAAGC-TCTTGTATTCACTCACCGAGCGTTACGACTACTGTCAATGG 191
Query 199 CGCGGCGTCGATTGCT-CTCAAGATCGCGTCGTTCGTCTTATCCTCGACGGTGTTGGTCT 257
||||||||| | || | |||||| ||| ||||||||||| | ||| ||| ||||||||
Sbjct 192 CGCGGCGTCAAATG-TGCTCAAGGTCGTATCGTTCGTCTTGTTCTCTCCGGCGTTGGTCT 250
Query 258 CCGGGGA-AGTTTCTCACCGGAGACTCTTAGTCGTCTTGATCAGCTTCGTGTTCTTAGCC 316
||| || | || ||| ||| ||||||||| |||||||| ||||| || ||||| || |
Sbjct 251 CCGTGGCTACTT-CTCTTCGGCGACTCTTAGCCGTCTTGACCAGCTCCGAGTTCTGAGTC 309
Query 317 TTGAGAATAACTCAATCTCGGGTTCGATTCCTGATCTATCTCCTCTCGTCAATCTCAAAA 376
| ||||||||||| ||| ||| ||||||||||||| || | |||||| || ||||||
Sbjct 310 TCGAGAATAACTCGCTCTTTGGTCCGATTCCTGATCTTTCACATCTCGTTAACCTCAAAT 369
Query 377 CCCTAACCCTAAGCAAGAA-TG-GTTTCTCCGGTACTCTTTCTTCT-TCAATTCTCTCTC 433
| || ||| ||| ||| || |||| |||||| || || | || || ||||||||||
Sbjct 370 CTCTCTTCCTTAGCC-GAAATGAGTTT-TCCGGTGCT-TTCCCTCCGTCGATTCTCTCTC 426
Query 434 TTCGTCGGTTAACAGAA-CT-TGA-TCTATCGTTTAACAACTTCTCCGGTGAGATTCCGT 490
||| ||||||| || || | ||| |||| ||||||||||||||| ||||||||
Sbjct 427 TTCACCGGTTAAT-GATTCTCTCCCTCTCTCGT--AACAACTTCTCCGGTTCGATTCCGT 483
Query 491 CGGGGATCAATGCTCT-GAGTCGACTCAGTTCTTTAAATCTCGAGTTTAATCGACTTAAC 549
| | |||||| ||||| || || | | ||| || ||||||||||| || || |||||
Sbjct 484 CTGAGATCAACGCTCTTGAC-CGGTTAACTTCATTGAATCTCGAGTTCAACCGGTTTAAC 542
Query 550 GGAACTCTCCCGCCGTTAAATCTTTC-TTCTCTGATTTCATTTAACGTTTCCAGTAACAA 608
|||||||||||||||||||||| || || ||||| || |||||||||||| |||||||
Sbjct 543 GGAACTCTCCCGCCGTTAAATCAGTCGTT-TCTGACGTCTTTTAACGTTTCCGGTAACAA 601
Query 609 CCTCACCGGT-TTAGTTCC-GTTAACAAAGACTCTGTTACGATTCAACGCGTCTTCGTTT 666
|||||||| ||| | || |||| || |||||| | ||||||| | ||||| ||||||
Sbjct 602 TCTCACCGGGGTTA-TCCCCGTTA-CACCGACTCTATCACGATTCGATGCGTCGTCGTTT 659
Query 667 TCGTCAAACCCTGGACTCTGCGGTGAGATCATTAACCGATCTTGCGGTTTACATTCTTCT 726
||| |||||||||||||||||||||||||| ||| || |||||| || || | ||
Sbjct 660 AAGTCTAACCCTGGACTCTGCGGTGAGATCATAAACAGAGCTTGCGCTT--CA--CG-CT 714
Query 727 TCTCCGTTCTTTGGTTC-ACCTAAACCAAACACCACGTCATCA-ACATCTTCTGCTTCTT 784
| |||||||||||||| || ||| | ||| || ||||| ||| | | || | | ||
Sbjct 715 -CGCCGTTCTTTGGTTCCAC-TAA-C-AAA-ACGACGTCGTCAGA-ACCTCC-G-TTAG- 765
Query 785 CGTCTGAAGCACCGGTTATTCAAAGTGAACAGAACGGTGAAGCAGCGATGATTGTTCCAC 844
| | |||| | | || | | |||||||||| || | | ||||| || | |
Sbjct 766 -GACA-AAGCGC---T----CAG-GCG--CAGAACGGTGGTGC-G-G-TGATTATTTCTC 810
Query 845 CGGTGGTTA--AA-AAG---GTTAAAAACG-GTTGG-TTAGTTCTTGGTTTCACCATTGG 896
||||||||| || ||| | |||| | | || || ||||||||||||| |||| |||
Sbjct 811 CGGTGGTTACGAAGAAGAAAGGTAAAGA-GAGT-GGATTAGTTCTTGGTTCCACCGCTGG 868
Query 897 TCTCGCTTCT-TTGATAGTTCTAGGTCTCTGCCTCGTCGTGTTCTCGT-TGTTTATAAA- 953
||||||||| || || ||||| ||||| |||||||| |||||||| | || | |||||
Sbjct 869 TCTCGCTTCGCTT-ATTGTTCTTGGTCTTTGCCTCGTTGTGTTCTC-TCTGGTGATAAAG 926
Query 954 AAAC 957
||||
Sbjct 927 AAAC 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74542609465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5