BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50260.1 Length=823 Score E Sequences producing significant alignments: (Bits) Value Ahg485380 jgi|Araly1|485380|fgenesh2_kg.5__1372__AT3G50260.1 911 0.0 > Ahg485380 jgi|Araly1|485380|fgenesh2_kg.5__1372__AT3G50260.1 Length=807 Score = 911 bits (493), Expect = 0.0 Identities = 590/637 (93%), Gaps = 5/637 (1%) Strand=Plus/Plus Query 1 CTCTCTTCACATATATAAGAGAGTCCCTTGATCAAGAAACCAGATAATTTCCCCAAACAC 60 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | | Sbjct 1 CTCTCTTCACATATATAAGAGAGTCCCTTGATCAAGAAATCAGATAATTTCCCTAATCCC 60 Query 61 AATTCTAAAGTCCTCCTCTCGGAAA-GTAAGAGACTCAACTTCCGAGCCGCCATGGACGC 119 | ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct 61 ACTTCTAAAGTCCTCCTCTTGGAAACCTAAGAGACTCAACTCCCGAGCCGCCATGGACGC 120 Query 120 CGGAGTAGCAGTAAAAGCTGACGTGGCA-GT-CAAAATGAAGAGAGAAAGACCATTCAAA 177 ||||||||||||||||| |||||||| | || ||| | ||||||||||||||||||||| Sbjct 121 CGGAGTAGCAGTAAAAGTTGACGTGGTAGGTGCAAGA--AAGAGAGAAAGACCATTCAAA 178 Query 178 GGGATCAGAATGAGAAAATGGGGGAAATGGGTTGCGGAGATTCGAGAACCCAACAAGCGT 237 ||||| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 179 GGGATAAGGATGAGGAAATGGGGAAAATGGGTGGCGGAGATTCGAGAACCCAACAAGCGT 238 Query 238 TCAAGACTTTGGCTCGGCTCTTACTCTACTCCCGAAGCGGCGGCGCGTGCATACGACACG 297 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 239 TCAAGACTTTGGCTCGGCTCTTACTCTACTCCCGAAGCGGCTGCGCGTGCATACGACACG 298 Query 298 GCTGTCTTTTACCTCAGAGGACCAACTGCTACGCTCAACTTCCCGGAGCTTCTGCCGTGT 357 || || |||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 299 GCGGTGTTTTACCTCAGAGGGCCCACCGCTACGCTCAACTTCCCGGAGCTTCTGCCGTGT 358 Query 358 ACCTCCGCCGAGGATATGTCAGCGGCAACGATCAGGAAAAAGGCGACGGAGGTGGGAGCT 417 || ||| | ||||| ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 359 ACGTCCACTGAGGACATGTCAGCGGCCACGATCAGGAAAAAGGCGACGGAGGTCGGAGCT 418 Query 418 CAAGTAGATGCGATAGGGGCGACGGTGGTGCAGAACAACAAACGCCGCCGCGTTTTTAGT 477 || ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct 419 CAGGTAGATGCGATAGGGACGACGGTGGTTCAGAACAACAAACGCCGCCGTGTTTTTAGT 478 Query 478 CAAAAGCGTGACTTTGGCGGCGGGTTATTAGAGCTTGTTGACTTGAACAAGTTACCTGAC 537 ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| ||| Sbjct 479 CAAAAGCGTGACTTTGGCGGCGGATTATTAAAGCTTGTTGACTTGAACAAGCTACCCGAC 538 Query 538 CCGGAAAATCTCGATGATGATTTGGTGGGAAAATAGACTGAAAAATAATAATAAAATATC 597 |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 539 CCGGAAAATCTCGATGATGATTTGGTGGGAAAATAGACCGAAAAATAATAAAAAAATATT 598 Query 598 TTACAATGGTGGCTGTAGCTATCGTACGCGGAATGCT 634 |||||| ||||||||| |||||||||||||| ||||| Sbjct 599 TTACAACGGTGGCTGTTGCTATCGTACGCGGTATGCT 635 Score = 171 bits (92), Expect = 1e-41 Identities = 148/172 (86%), Gaps = 16/172 (9%) Strand=Plus/Plus Query 668 AAGATTCCTCTGTTTCGTCATTGTATTAAAATTTAATCCCACAAGTCAAACA-TACTGTA 726 |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| Sbjct 636 AAGATTCCTCTGTTTCGTCATTGTATTAAAATTTAATCTCACAAGTCAAACACTTCTGTA 695 Query 727 CATTATTCTTAATTTAGTATTTTCTT---A-T-TA-ATAT--CTATCATTTGTTTGGTGA 778 |||| |||||||||||||| |||||| | | || |||| |||||| ||||||||||| Sbjct 696 CATTTTTCTTAATTTAGTAATTTCTTGTTAATATATATATATCTATCAATTGTTTGGTGA 755 Query 779 ACAC----CA---GAATATTAGACTATTAATGTAACGAGTTTTTAATATTTC 823 |||| || |||||||||||||||| |||||||||| | ||||||||| Sbjct 756 ACACTGAACACCAGAATATTAGACTATTAGTGTAACGAGTGTCTAATATTTC 807 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30422087766 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5