BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50260.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485380 jgi|Araly1|485380|fgenesh2_kg.5__1372__AT3G50260.1 911 0.0
> Ahg485380 jgi|Araly1|485380|fgenesh2_kg.5__1372__AT3G50260.1
Length=807
Score = 911 bits (493), Expect = 0.0
Identities = 590/637 (93%), Gaps = 5/637 (1%)
Strand=Plus/Plus
Query 1 CTCTCTTCACATATATAAGAGAGTCCCTTGATCAAGAAACCAGATAATTTCCCCAAACAC 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
Sbjct 1 CTCTCTTCACATATATAAGAGAGTCCCTTGATCAAGAAATCAGATAATTTCCCTAATCCC 60
Query 61 AATTCTAAAGTCCTCCTCTCGGAAA-GTAAGAGACTCAACTTCCGAGCCGCCATGGACGC 119
| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 ACTTCTAAAGTCCTCCTCTTGGAAACCTAAGAGACTCAACTCCCGAGCCGCCATGGACGC 120
Query 120 CGGAGTAGCAGTAAAAGCTGACGTGGCA-GT-CAAAATGAAGAGAGAAAGACCATTCAAA 177
||||||||||||||||| |||||||| | || ||| | |||||||||||||||||||||
Sbjct 121 CGGAGTAGCAGTAAAAGTTGACGTGGTAGGTGCAAGA--AAGAGAGAAAGACCATTCAAA 178
Query 178 GGGATCAGAATGAGAAAATGGGGGAAATGGGTTGCGGAGATTCGAGAACCCAACAAGCGT 237
||||| || ||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 179 GGGATAAGGATGAGGAAATGGGGAAAATGGGTGGCGGAGATTCGAGAACCCAACAAGCGT 238
Query 238 TCAAGACTTTGGCTCGGCTCTTACTCTACTCCCGAAGCGGCGGCGCGTGCATACGACACG 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 TCAAGACTTTGGCTCGGCTCTTACTCTACTCCCGAAGCGGCTGCGCGTGCATACGACACG 298
Query 298 GCTGTCTTTTACCTCAGAGGACCAACTGCTACGCTCAACTTCCCGGAGCTTCTGCCGTGT 357
|| || |||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 299 GCGGTGTTTTACCTCAGAGGGCCCACCGCTACGCTCAACTTCCCGGAGCTTCTGCCGTGT 358
Query 358 ACCTCCGCCGAGGATATGTCAGCGGCAACGATCAGGAAAAAGGCGACGGAGGTGGGAGCT 417
|| ||| | ||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 359 ACGTCCACTGAGGACATGTCAGCGGCCACGATCAGGAAAAAGGCGACGGAGGTCGGAGCT 418
Query 418 CAAGTAGATGCGATAGGGGCGACGGTGGTGCAGAACAACAAACGCCGCCGCGTTTTTAGT 477
|| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct 419 CAGGTAGATGCGATAGGGACGACGGTGGTTCAGAACAACAAACGCCGCCGTGTTTTTAGT 478
Query 478 CAAAAGCGTGACTTTGGCGGCGGGTTATTAGAGCTTGTTGACTTGAACAAGTTACCTGAC 537
||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||
Sbjct 479 CAAAAGCGTGACTTTGGCGGCGGATTATTAAAGCTTGTTGACTTGAACAAGCTACCCGAC 538
Query 538 CCGGAAAATCTCGATGATGATTTGGTGGGAAAATAGACTGAAAAATAATAATAAAATATC 597
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 539 CCGGAAAATCTCGATGATGATTTGGTGGGAAAATAGACCGAAAAATAATAAAAAAATATT 598
Query 598 TTACAATGGTGGCTGTAGCTATCGTACGCGGAATGCT 634
|||||| ||||||||| |||||||||||||| |||||
Sbjct 599 TTACAACGGTGGCTGTTGCTATCGTACGCGGTATGCT 635
Score = 171 bits (92), Expect = 1e-41
Identities = 148/172 (86%), Gaps = 16/172 (9%)
Strand=Plus/Plus
Query 668 AAGATTCCTCTGTTTCGTCATTGTATTAAAATTTAATCCCACAAGTCAAACA-TACTGTA 726
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 636 AAGATTCCTCTGTTTCGTCATTGTATTAAAATTTAATCTCACAAGTCAAACACTTCTGTA 695
Query 727 CATTATTCTTAATTTAGTATTTTCTT---A-T-TA-ATAT--CTATCATTTGTTTGGTGA 778
|||| |||||||||||||| |||||| | | || |||| |||||| |||||||||||
Sbjct 696 CATTTTTCTTAATTTAGTAATTTCTTGTTAATATATATATATCTATCAATTGTTTGGTGA 755
Query 779 ACAC----CA---GAATATTAGACTATTAATGTAACGAGTTTTTAATATTTC 823
|||| || |||||||||||||||| |||||||||| | |||||||||
Sbjct 756 ACACTGAACACCAGAATATTAGACTATTAGTGTAACGAGTGTCTAATATTTC 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5