BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50270.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485381 jgi|Araly1|485381|fgenesh2_kg.5__1373__AT3G50270.1 1908 0.0
Ahg485382 jgi|Araly1|485382|fgenesh2_kg.5__1374__AT3G50280.1 651 0.0
Ahg485383 jgi|Araly1|485383|fgenesh2_kg.5__1375__AT3G50300.1 392 3e-108
> Ahg485381 jgi|Araly1|485381|fgenesh2_kg.5__1373__AT3G50270.1
Length=1344
Score = 1908 bits (1033), Expect = 0.0
Identities = 1246/1349 (92%), Gaps = 14/1349 (1%)
Strand=Plus/Plus
Query 15 AGGAGGGGTAGTTTTAGTCTCCTCGAGCATTGTTCGGCCAGTAAACAGCAGCCAATCTGG 74
||||||||||||||||||||| ||||| |||||||| || |||| |||||||||||| ||
Sbjct 6 AGGAGGGGTAGTTTTAGTCTCGTCGAGTATTGTTCGACCCGTAAGCAGCAGCCAATC-GG 64
Query 75 -TCGAACTAAGATCCATCTTACTCCATTTGATCTAAGTCTTCTTCAATTCGATTATCCTC 133
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 65 ATCGAACTAAGATCCATCTTACTCCATTTGATCTGAGTCTTCTTCAATTCGATTATCCTC 124
Query 134 AAAGAGGTCTTCTCTTCTCCAAACCCGACTCAGATTTCCATCTCATCATCTCTCGACTAA 193
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 125 AAAGAGGTCTTCTCTTCTCCAAACCCGACTCAGATTTCCATCTCATC-TCTC--GACTAA 181
Query 194 AAGACTCTCTCTCACTCGCCTTGGAGATCTACTTCCCTTTCGCGGGT-CGTCTCGTCAAA 252
| | ||||||| | || ||||| ||||| |||||||||||||||||| | |||||||| |
Sbjct 182 AGGCCTCTCTCGCTCTTGCCTTAGAGATTTACTTCCCTTTCGCGGGTAC-TCTCGTCAGA 240
Query 253 ACAGAGAATCTTGAAGACGATACGGTGTCATTTTTCATAGACTGTGATGGCTCTGGCGCT 312
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 241 ACAGAGAATCTTGAAGACGATACGGTGTCGTTTTTCATAGACTGCGATGGTTCTGGCGCT 300
Query 313 AGATTTCTCCACACCGAAGCAAAATCTGTCTCCGTGAGTGATATTCTTCAGCCTGATGGT 372
|||||||||||| ||||||| ||||||||||||||||||||| |||| || |||||||||
Sbjct 301 AGATTTCTCCACGCCGAAGCTAAATCTGTCTCCGTGAGTGATTTTCTCCATCCTGATGGT 360
Query 373 TCTGTTCCTGATTTCTTGAAGTACTTCTTTCCCGCCGACGATTTCAAGAGCTGTGATGGT 432
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TCTGTTCCTGATTTCATGAAGTACTTCTTTCCCGCCGATGATTTCAAGAGCTGTGATGGT 420
Query 433 GTCTCGTTGCCCTTGCTTGTTATACAAGTTACCGAGATGAAGGACGGAGTTTTCATCAGT 492
|||||| |||||||||||| ||| |||||||||||||||| ||||||||| |||||||||
Sbjct 421 GTCTCGGTGCCCTTGCTTGCTATCCAAGTTACCGAGATGACGGACGGAGTCTTCATCAGT 480
Query 493 TTCTGTTACAACCACATGGTGGCAGACGGTGTTTCCATGTGGAGTTTTTTCGATACTTGG 552
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 481 TTCTGTTACAACCACATGGTGGCAGACGGTGTTTCCATGTGGAGTTTCTTCCACACTTGG 540
Query 553 TCCAAGATTTGCTCAACAGGTTCATGTTTCAATTACAAGCCTCTTGTTCTCAAAGGGTGG 612
|||||||||||||||| |||||| |||| || |||||||||||||||||||||| |||
Sbjct 541 TCCAAGATTTGCTCAAGTGGTTCAGGTTTTAACCACAAGCCTCTTGTTCTCAAAGGATGG 600
Query 613 TTCCTTGAGGGGATCGATTACCCAATCCATGTTCCAGTTTCAGAGGCAGAGAGGTCACCA 672
||||| ||||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||
Sbjct 601 TTCCTCGAGGGGATCGATTACCCGATCCATATTCCGGTTTCGGAGACAGAGAGGTCACCA 660
Query 673 CCAAGCCGTGAACCTTCTTCCGTGCCCATTACGAAAGAATGGATTTTTCACTTCACAAAG 732
||||||||||||| ||| || |||||||||||||||||||||| |||||||||| |||||
Sbjct 661 CCAAGCCGTGAACTTTCCTCGGTGCCCATTACGAAAGAATGGAATTTTCACTTCTCAAAG 720
Query 733 AAGAATATT-TCAGATCTCAAAGCTAAAGCCAACAGCGAGATTGCCTCCAGTAGTGACCT 791
||||||||| | |||||||||||||||||||||||||||| ||||||||||| | || |
Sbjct 721 AAGAATATTAT-AGATCTCAAAGCTAAAGCCAACAGCGAGGTTGCCTCCAGT-G--ACAT 776
Query 792 AGAAGTTTCATCTCTTCAAGCGGTTTCGGCACATATGTGGCGATCAATCATCAGACACAG 851
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAAGTTTCATCTCTTCAAGTGGTTTCGGCACATATGTGGCGATCAATCATCAGACACAG 836
Query 852 TGGTGTGAGCCGAGAACAAAAGACACATTGCAGACTAGTGGTGGACTTGAGGCAAAGAGT 911
||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||
Sbjct 837 TGGTGTGAGCCGAGAACGAGAGACACATTGCAAACTAGTGGTGGACTTGAGGCAGAGGGT 896
Query 912 AAATCCACCGCTTGAGAAAGATTGTTTTGGGAATATGGTCTATCTTTCATCAGCCATAAC 971
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 897 AAATCCTCCGCTTGAGAAAGATTGTTTTGGGAATATGGTCTATCTTACATCAGCCATAAC 956
Query 972 CACCGTGGAAGAGCTCTTGGATCGTGGTTTGGGTGAGGCTGCTTTGCAAATAAGAAAATT 1031
||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 957 CACCGCGGAAGAGCTCTTAGATCGCGGCTTGGGTGAGGCTGCTTTGCAAATAAGAAAATT 1016
Query 1032 AGTTAGCTCGCAAACGAATGAAACTTGTAAAAGTTTTGCAGAAGATTGGGTTAGAAATAT 1091
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1017 AGTGAGCTCGCAAACGAATGAAACTTGTAAAAGTTTTGCAGAGGATTGGGTTAGAAATGT 1076
Query 1092 TAAGAACCTAAATTCAGGCATTGGCAGTAAAGTAGGTAATACTATAGTTATCGCAAGCTC 1151
|||||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 1077 TAAGAACCTAAAATCAGGTATTGGTAGTAAAGTAGGTGATACTATAGTTGTCGCAAGCTC 1136
Query 1152 TCCGCGGTTCGAGGTGTACAACAAAGATTTCGGTTGGGGCAAACCTATTGCAATTCGAGC 1211
||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1137 TCCACGGTTCGACGTGTACAACAAAGATTTCGGTTGGGGCAAACCTCTTGCAATTCGAGC 1196
Query 1212 TGGACCATCCAATAGTATCAATGGCAAGCTTTCAGTTTTTCAGGGAATCAGTGAAGGAAG 1271
|||||| ||||||||||||| ||| || |||||| ||||||||||||||| |||||||||
Sbjct 1197 TGGACCGTCCAATAGTATCAGTGGAAAACTTTCACTTTTTCAGGGAATCAATGAAGGAAG 1256
Query 1272 TATTGATGTTCAAGCAATCCT-ATGGGGTGATGTAATAGTGAAACTACTAGCTGATTTGG 1330
||||||| ||||||||| | | ||||| ||||||||||||||||||||||| ||| |||
Sbjct 1257 TATTGATATTCAAGCAA-CATTATGGGAAGATGTAATAGTGAAACTACTAGCCGATGTGG 1315
Query 1331 AATTTTTAGAGCATGTAACTATTGCATGA 1359
||||||||||||||||||||| |||||||
Sbjct 1316 AATTTTTAGAGCATGTAACTACTGCATGA 1344
> Ahg485382 jgi|Araly1|485382|fgenesh2_kg.5__1374__AT3G50280.1
Length=1338
Score = 651 bits (352), Expect = 0.0
Identities = 1016/1323 (77%), Gaps = 99/1323 (7%)
Strand=Plus/Plus
Query 82 AAGATCCATCTTACTCCATTTGATCTAAGTCTTCTTCAAT-TCGATTATCCTCAAAGAGG 140
||||||||||| |||||||||||||||| | ||| || || | |||||| ||||||||||
Sbjct 70 AAGATCCATCTAACTCCATTTGATCTAAATTTTC-TCTATGTTGATTATACTCAAAGAGG 128
Query 141 TCTTCTCTTCTCCAAACCCGACTCAGATTTCCATCTCATCATCTCTCGACTAAAAGA-CT 199
|||||||||| ||||||||||| | || |||| | ||||||||||| ||||| | ||
Sbjct 129 TCTTCTCTTCCCCAAACCCGACCCGGAAACCCAT-T--TCATCTCTCGATTAAAA-ACCT 184
Query 200 CTCTCTCACTC-GCCT-TGGAGATCTACTTCCCTTTCGCGGGTCGTC-TCGTCAAAACAG 256
|||| || || | || | || ||||||||||| ||||| ||||||| | | |||| |
Sbjct 185 CTCTTTC-TTCTG-CTCTAGATATCTACTTCCCCTTCGCTGGTCGTCTTAG-CAAAGTTG 241
Query 257 AGAATCTTGAAGACGATACGGTGTCATTTTTCAT-AGACTGTGATGGCTCTGGCGCTAGA 315
| |||| |||||| ||||||||||| |||| ||| | | || | |||||||| |||| |
Sbjct 242 AAAATCATGAAGATGATACGGTGTCGTTTTACATCA-ATTGCAACGGCTCTGGTGCTACA 300
Query 316 TTTC-TCCACACCGAAGCAAAATCTGTCTCCGTGAGTGATATTCTTCAGCCTGATGGTTC 374
||| |||| ||| ||| |||| |||| || || ||| ||||||| |||||||| ||
Sbjct 301 -TTCATCCATGCCGTAGCTGAATCAATCTCGGTAAGCGATCTTCTTCAACCTGATGGCTC 359
Query 375 TGTTCCTGATTTCTTGAAGTA-CTTCTTTCCCGCCG-ACGATTTCAAGAGC-TGTGATGG 431
|||||||||||| || || | |||| |||| | ||| | |||||||| | ||| ||
Sbjct 360 TGTTCCTGATTT-TTCCAGGATTTTCTATCCC-ATGAACGGTGTCAAGAGCAT-TGACGG 416
Query 432 TGTCT-CGTTGCCCTTGCTT-GTTATACAAGTTACCGAGATGAAG-GACGGAGTTTTCAT 488
|||| || |||||||||| ||| ||||||||||||||||| || || ||||| |||||
Sbjct 417 CGTCTCCG-AGCCCTTGCTTGGTT-TACAAGTTACCGAGATG-AGAGATGGAGTCTTCAT 473
Query 489 CAGTTTCT-GTTACAACCACATGGTGGCAGACGGTGTTTCCATGTGGAGTTTTTTCGATA 547
| |||| | ||||||| |||||||| || ||||||| ||| || |||| ||| ||| | |
Sbjct 474 CGGTTT-TGGTTACAATCACATGGTCGCCGACGGTGCTTCGATCTGGAATTTCTTCAAAA 532
Query 548 CTTGGTCCAAGATTTGCTC-AACAGGTTC-A-TGTTTCAAT-TACAAGCCTCTTGTTCTC 603
| ||||| ||||||||||| || || || | | ||| | | ||||||||| |||
Sbjct 533 CCTGGTCAAAGATTTGCTCTAA-TGG-TCAACCG-GAGAATCTTC-AGCCTCTTGCCCTC 588
Query 604 AAAGGGTGGTTCCTTGAGGGGATCGATTACCCAATCCATGTTCCAGTTTCAGAGGCAGAG 663
||||| |||||| | || || || |||| ||| |||||| |||| ||||| ||| |||||
Sbjct 589 AAAGGATGGTTCGTGGACGGAATGGATTTCCCGATCCATATTCCGGTTTCCGAGACAGAG 648
Query 664 AGGTCACCACCAAGCCGTGAACCTTCTTCCGTGCCCATTACGAAAGAATG-GA-TTTTTC 721
| | ||||||||||| ||||| ||| ||| |||| | |||| | | || ||||||
Sbjct 649 ACGCCACCACCAAGCAATGAACTTTC-TCC---AACATT-C-AAAG-A-GAGAGTTTTTC 700
Query 722 ACTTCACAAAGAAGAATATTTCAGATCTCAAAGCTAAAGCCAACAGCGAGATTGCCTCCA 781
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 701 ACTTCACAAAGAAGAATATTTCAGATCTCAAAGCTAAAGTCAACAGCGAAATTGGCTC-- 758
Query 782 GTAGTGACC-TAGAAGTTTCATCTCTT-CAAGCGGTTTCGGCACATATGTGGCGATCAAT 839
| ||||||| || |||| || ||| || |||||||| ||||| |||||||||||||||||
Sbjct 759 G-AGTGACCATA-AAGTCTCGTCT-TTACAAGCGGTCTCGGCGCATATGTGGCGATCAAT 815
Query 840 CATCAGACACAGTGGTGTGAGCCGAGAACAAAAGACACATTGCAGACTAGTGGTGGA-CT 898
||| ||||||| |||| | | || |||| ||||||| | |||| ||| ||||| ||
Sbjct 816 CATTAGACACAATGGTCTAAACCAAGAAGAAAAGACGCGTTGCTTTGTAGCAGTGGATCT 875
Query 899 TGAGGCAAAGAG-TAAATCCACCGCTTGAGAAAGATTGTTTTGGGAATATGGTCTATCTT 957
||||| || | |||| || ||||| |||||||| |||||||| || || |||||
Sbjct 876 A-AGGCAGAG-GCTAAACCCTCCGCTCGAGAAAGAGTGTTTTGGTCATGTGATCTATAAC 933
Query 958 TC-ATCAGCCATAACCACCGTGGAAGAGCT-CTTGGATC-GTGGTTT-GGGTGAGGCTGC 1013
| || ||| | |||||| |||| ||| | | || || | ||| | ||||| ||||
Sbjct 934 GCGAT-AGCTACAACCACAGTGGGGGAGTTGCAGGG-TCAG-GGTCTAGGGTG-GGCTTT 989
Query 1014 TTTGCAAATAAGAAAAT-TAGTT-AGCTCGCAAACGAATGAA-ACTTGTAAAAGTTTTG- 1069
||||||||||| | ||| | ||| || ||| ||||||||| ||| || || ||| |
Sbjct 990 TTTGCAAATAA-ATAATAT-GTTGAGGTCGTTGACGAATGAAGACTA-TAGAA-TTTGGG 1045
Query 1070 CAGAAGA-TTGGGTTAGAAATATTAAGA-ACCTAAATTCAGG-CATTGGCAGTAAA--G- 1123
| || || ||||||||||||||| |||| || |||| |||| | |||| |||||| |
Sbjct 1046 CTGA-GAATTGGGTTAGAAATATGAAGATACAAAAAT-CAGGTC-TTGGAAGTAAAATGA 1102
Query 1124 -TAGGTAATACTATAGTTATCG-CAAGCTCTCCGCGGTTCGAGGTGTACAACAAAGATTT 1181
|||| | | || || || | | |||||||||| |||| || |||||| | || |||||
Sbjct 1103 CTAGGGATT-CTGTAATTGT-GTCAAGCTCTCCTTGGTTTGAAGTGTACGATAACGATTT 1160
Query 1182 CGGTTGGGGCAAACCTATTGCAATTCGAGCTGGACC-ATCCAATAGTATCAATGGCAAGC 1240
||||||||| ||||| || || ||||||||||||| | | |||||||| | |||||| |
Sbjct 1161 CGGTTGGGGTAAACCGATCGCGGTTCGAGCTGGACCGAGC-AATAGTATTAGTGGCAAAC 1219
Query 1241 TTTCAGT--TTTTCAG-GGAATC-AGTGAAGGAAGTATTGATGTTCAAGCAATCCTATGG 1296
| | || ||||| | || || | ||||| ||||||||||||| || | |||| |
Sbjct 1220 T--C-GTGCTTTTCCGTGGGATTGAA-GAAGGCTGTATTGATGTTCATGCGTTTCTATTG 1275
Query 1297 GGTGATGTAATAGTGAAACTACTAGCTGATTTGGAATTTTTAGAGCATGTAACTATTGCA 1356
|| ||| | ||||||||||||||||| |||||||| | ||| |||| ||| || |
Sbjct 1276 TCCGACGTACTTGTGAAACTACTAGCTGACGTGGAATTTCTGGAGAATGTGGCTAATGTA 1335
Query 1357 TGA 1359
|||
Sbjct 1336 TGA 1338
> Ahg485383 jgi|Araly1|485383|fgenesh2_kg.5__1375__AT3G50300.1
Length=1239
Score = 392 bits (212), Expect = 3e-108
Identities = 839/1130 (74%), Gaps = 89/1130 (8%)
Strand=Plus/Plus
Query 198 CTCTCTCTCACT-C-GCCTTGGAGATCTACTTCCCTTTCGCGGGTCGTCTCGTCAAAACA 255
||||||||| || | || || ||||||||||||||||||||||||||||| ||||||
Sbjct 64 CTCTCTCTCTCTGCTGCTTTAGAGATCTACTTCCCTTTCGCGGGTCGTCTTGTCAAAGT- 122
Query 256 GAG-AATCTTGAAGACGATACGGTGTCATTTTTCATAGACTGTGATGGCT-C--TGGCGC 311
|| || | |||||| ||||| | || ||| ||| |||||||| | | | ||| ||
Sbjct 123 GAACAACCATGAAGATAATACGATATCGCTTTACATCGACTGTGACGACGGCCGTGGTGC 182
Query 312 TAGATTTC-TCCACACCGA-AGCAAAATCTGTCTCCGTGAGTGATATTCTT-CAGCCTGA 368
|| |||| |||| || | |||| ||||| |||| || || ||||| ||| || ||| |
Sbjct 183 CAG-TTTCGTCCATGCC-ATAGCAGAATCTATCTCGGTAAGCGATAT-CTTTCACCCTCA 239
Query 369 TGGTTCTGTTCCTGA-TTTCTTGAAG-TACTTCTTTCCCGCCGA-CGAT-TTCAAGA-GC 423
||| ||||||||||| ||| || ||| | ||||| |||| || || | || | || ||
Sbjct 240 TGGCTCTGTTCCTGACTTT-TTCAAGCTT-TTCTTCCCCGT-GAACGGTGTT-A-GAAGC 294
Query 424 -TGTGATGGTGTCTCGTTGCCCTTGCTTGTTATACAAGTTACCGAGATGAAGGACGGAGT 482
| || || ||||| ||||||||||| | ||||||| |||||||| || || ||| |
Sbjct 295 ATC-GACGGACTCTCGGAGCCCTTGCTTGCTGTACAAGTCACCGAGATAAAAGATGGAAT 353
Query 483 TTTCATCAGTTTCTGTTACAACCACATGGTGGCAGACGGTGT-TTCCATGTGGAGTTTTT 541
|||| |||| | ||||||||||| ||||||| || ||| | ||| ||||||| |||
Sbjct 354 CGTCATTAGTTACGGTTACAACCACTTGGTGGCCGATGGT-TCTTCTATGTGGAAATTTA 412
Query 542 TCGATACTTGGTCCAAGATTTGCTC-AACAGGTTCATGTTTCAATTA-CA--AGCCTCTT 597
|| | |||||| ||||||| || || ||| ||| ||| | || ||||||||
Sbjct 413 TCCACGGTTGGTCAAAGATTTTCTTGAAT-GGTGAATGGGAGAATCATCATCAGCCTCTT 471
Query 598 GTTCTCAAAGGGTGGTTCCTTGAGGGGATCGATTACCCAATCCATGTTCCAGTTTCAGAG 657
|| |||| ||| |||||||| || |||||||| ||| |||||| |||| ||||| |||
Sbjct 472 GTCCTCAGAGGATGGTTCCTCGACAAGATCGATTTCCCGATCCATATTCCGGTTTCGGAG 531
Query 658 GCAGAGAGGTCACCACCAAGCCGTGAACCTTCTTCCGTGCCCATT--ACGAAAGA-ATG- 713
||||| || | | | ||||| || | | | || |||||||| | |
Sbjct 532 ATAGAGA---CAG-AG-AGG--GTGAAAAATCGT--GAAAC--TTCGACGAAAGAGA-GA 579
Query 714 GATTTTTCACTTCACAAA-GAAGAATATTTCAGATCTCAAAGCTAAAGCCAACAGCGAGA 772
| |||||||||||||||| || ||| |||||| |||| ||||||||||| ||| |||| |
Sbjct 580 G-TTTTTCACTTCACAAAAGA-GAAAATTTCATATCTTAAAGCTAAAGCTAACGGCGAAA 637
Query 773 TTGCCTCCAGTAGTGACCTAGAAGT-T-TCATCTCTTCAAGCGGTTTCGGCACATATGTG 830
| | ||| | |||||| || || | | ||||| |||||||| |||| ||||||| | ||
Sbjct 638 TAGACTC-A--AGTGACATA-AA-TATATCATCCCTTCAAGCTGTTTTGGCACATCTATG 692
Query 831 GCGATCAATCA-TCAGACACAGTGGTGTGAGCCGAGAACAAAAGACACATTGCAGACTAG 889
||||||||| | | |||||||||||| | | ||||||| || ||| |||||| | |||
Sbjct 693 GCGATCAAT-AGTTAGACACAGTGGTCTAAACCGAGAAGAAGAGAGTCATTGCGGTGTAG 751
Query 890 TGGTGGACTTGAGGCAAAGAG-TAAATCCACCGCTTGAGAAAGATTGTTTTGGGAATATG 948
| ||| || ||||| || | |||| || || ||||| ||||| |||||||| ||| |
Sbjct 752 CAGCGGATTTCAGGCAGAG-GCTAAACCCTCCACTTGATAAAGACTGTTTTGGCAATGTA 810
Query 949 GTCTATCTTTC-ATCAGCCATAACCACCGTGGAAGAGCTCTTGGATCGTGGTTTGGG-TG 1006
| | ||||| || || | | ||||||||| ||| | | |||||||| |||| ||
Sbjct 811 GCCAATCTTGGGATG-GCTACAGCCACCGTGGGAGATTTGGTCGATCGTGGACTGGGATG 869
Query 1007 AGGCTGCTTTGCAAATAAG-AAAATTAGTTAGCTCGCAAACGAATGAA-ACTTGTAAAAG 1064
||||||||||||||||| |||| | || || ||||||||||||||| ||| || ||
Sbjct 870 -GGCTGCTTTGCAAATAAATAAAACT-GTGAGGTCGCAAACGAATGAAGACTA-TAGAAC 926
Query 1065 TTTTGCAGAAGA-TTGGGTTAGAAATATTAAGAACCTAA-A-TTCAGGCATTGGCAGTAA 1121
|||||| || || ||||||||||||| ||||| || || | || | | || | |||||
Sbjct 927 TTTTGCTGA-GAATTGGGTTAGAAATGGTAAGATCCCAAGAATTGATG--TTAGAAGTAA 983
Query 1122 A-GTAGGTAAT-ACTATAGTTATCG-CAAG--CTCTCCGCGGTTCGAGGTGTACAACAAA 1176
| | ||| || | | | |||| | ||| |||||| ||||| | || || | ||
Sbjct 984 AAGG-GGTGATCA-TGTTTTTATTGTCAATAACTCTCCTTGGTTCAAAGTTTATGATAAT 1041
Query 1177 GATTTCGGTTGGGGCAAACCTATTGCAATTCGAGCTGGACCATCCAATAGTATCAATGGC 1236
|||||||||| ||| ||||| ||||| ||||||||||||| | ||| |||| ||||
Sbjct 1042 GATTTCGGTTTGGGTAAACCGATTGCCGTTCGAGCTGGACCGGCAAATGGTATTGGTGGC 1101
Query 1237 AAGCTT-TCAGTTTTTC-AGGGAATC-AGTGAAGGAAGTATTGATGTTCA 1283
|||||| | |||||||| ||||| || | ||||||||||| ||||||||
Sbjct 1102 AAGCTTGT-AGTTTTTCGAGGGA-TCGAA-GAAGGAAGTATCGATGTTCA 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5