BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50280.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485382 jgi|Araly1|485382|fgenesh2_kg.5__1374__AT3G50280.1 1991 0.0
Ahg948067 jgi|Araly1|948067|scaffold_704296.1 586 1e-166
> Ahg485382 jgi|Araly1|485382|fgenesh2_kg.5__1374__AT3G50280.1
Length=1338
Score = 1991 bits (1078), Expect = 0.0
Identities = 1244/1326 (94%), Gaps = 3/1326 (0%)
Strand=Plus/Plus
Query 7 GACGTAACTTTTATTTCCTCAAGCATTGTTCGACCTCAAATCATAAACCAAGAAGGTCGT 66
||| ||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 7 GACATAACTCTTATTTCCTCGAGCACTGTTCGACCTCAAATCATAAACCAACAAGGTCGT 66
Query 67 GAAAAGATCCATCTAACTCCATTTGATCTTAATCTTCTCTATGTTGATTATACTCAAAGA 126
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 67 GAAAAGATCCATCTAACTCCATTTGATCTAAATTTTCTCTATGTTGATTATACTCAAAGA 126
Query 127 GGTCTTCTCTTCCCCAAACCCGACCCGGAAACCCATTTCATCTCTCGATTAAGAACCTCT 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 127 GGTCTTCTCTTCCCCAAACCCGACCCGGAAACCCATTTCATCTCTCGATTAAAAACCTCT 186
Query 187 CTTTCTTCTGCTCTAGATATTTACTTCCCCTTCGCTGGTCGTCTTAACAAAGTTGAAAAT 246
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 187 CTTTCTTCTGCTCTAGATATCTACTTCCCCTTCGCTGGTCGTCTTAGCAAAGTTGAAAAT 246
Query 247 CATGAAGACGAAACGGTGTCGTTTTACATCAATTGTGACGGCTCTGGTGCTAAATTCATC 306
|||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 247 CATGAAGATGATACGGTGTCGTTTTACATCAATTGCAACGGCTCTGGTGCTACATTCATC 306
Query 307 CATGCCGTATCCGATTCTGTTTCGGTAAGCGATCTTCTTCGACCTGATGGCTCTGTTCCT 366
||||||||| | || || | ||||||||||||||||||| |||||||||||||||||||
Sbjct 307 CATGCCGTAGCTGAATCAATCTCGGTAAGCGATCTTCTTCAACCTGATGGCTCTGTTCCT 366
Query 367 GACTTTTTC-AGGATTTTCTATCCCATGAACGGTGTCAAAAGCATCGACGGCCTCTCGGA 425
|| |||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| ||
Sbjct 367 GA-TTTTTCCAGGATTTTCTATCCCATGAACGGTGTCAAGAGCATTGACGGCGTCTCCGA 425
Query 426 GCCCTTGCTTGCTTTACAAGTTACCGAGATGAGAGATGGAGTTTTCATCGGTTTTGGTTA 485
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 426 GCCCTTGCTTGGTTTACAAGTTACCGAGATGAGAGATGGAGTCTTCATCGGTTTTGGTTA 485
Query 486 CAATCACATGGTCGCAGACGGTGCTTCCATCTGGAATTTCTTCAGGACTTGGTCAAAGAT 545
||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||
Sbjct 486 CAATCACATGGTCGCCGACGGTGCTTCGATCTGGAATTTCTTCAAAACCTGGTCAAAGAT 545
Query 546 TTGCTCTAATGGTCAACGGGAGAATCTTCAACCTCTTGCTCTCAAAGGATTGTTCGTGGA 605
||||||||||||||||| |||||||||||| |||||||| |||||||||| |||||||||
Sbjct 546 TTGCTCTAATGGTCAACCGGAGAATCTTCAGCCTCTTGCCCTCAAAGGATGGTTCGTGGA 605
Query 606 CGGGATGGATTTCCCGATACATATTCCGGTTTCAGACACAGAGACGTCACCACCAAGCCG 665
||| |||||||||||||| |||||||||||||| || ||||||||| |||||||||||
Sbjct 606 CGGAATGGATTTCCCGATCCATATTCCGGTTTCCGAGACAGAGACGCCACCACCAAGCAA 665
Query 666 TGAGCTTTCTCCGACATTCAAAGAGAGAGTTTTTCACTTCACAAAGAGGAATATCTCAGA 725
||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 666 TGAACTTTCTCCAACATTCAAAGAGAGAGTTTTTCACTTCACAAAGAAGAATATTTCAGA 725
Query 726 TCTCAAAGCTAAAGTCAACGGAGAAATTGGCTTGCGTGACCATAAAGTCTCGTCCTTACA 785
||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |||||
Sbjct 726 TCTCAAAGCTAAAGTCAACAGCGAAATTGGCTCGAGTGACCATAAAGTCTCGTCTTTACA 785
Query 786 AGCGGTCTCGGCTCACATGTGGCGATCAATCATTAGACACAGTGGTCTAAACCAAGAAGA 845
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 786 AGCGGTCTCGGCGCATATGTGGCGATCAATCATTAGACACAATGGTCTAAACCAAGAAGA 845
Query 846 AAAGACGCGTTGCTTTGTAGCAGTGGATCTAAGGCAGAGACTAAACCCTCCGCTTGACAA 905
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 846 AAAGACGCGTTGCTTTGTAGCAGTGGATCTAAGGCAGAGGCTAAACCCTCCGCTCGAGAA 905
Query 906 AGAGTGTTTTGGTCATGTGATCTATAACTCGGTAGTTACAACCACAGTGGGGGAGTTGCA 965
|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct 906 AGAGTGTTTTGGTCATGTGATCTATAACGCGATAGCTACAACCACAGTGGGGGAGTTGCA 965
Query 966 TGATCAGGGTCTAGGGTGGGCTTTTTTGCAAATAAATAATATGTTGAGATCTTTGACGAA 1025
| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 966 GGGTCAGGGTCTAGGGTGGGCTTTTTTGCAAATAAATAATATGTTGAGGTCGTTGACGAA 1025
Query 1026 TGAAGACTATAGAATTTATGCTGAGAATTGGGTTAGAAATATGAAGATTCAAAAATCAGG 1085
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1026 TGAAGACTATAGAATTTGGGCTGAGAATTGGGTTAGAAATATGAAGATACAAAAATCAGG 1085
Query 1086 TCTTGGAAGTAAAATGACTAGGGACTCTGTAATTGTGTCAAGCTCTCCTCGGTTTGAAGT 1145
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1086 TCTTGGAAGTAAAATGACTAGGGATTCTGTAATTGTGTCAAGCTCTCCTTGGTTTGAAGT 1145
Query 1146 GTACGATAACGATTTCGGTTGGGGCAAACCGATAGCGGTTCGAGCTGGACCGAGTAACAG 1205
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct 1146 GTACGATAACGATTTCGGTTGGGGTAAACCGATCGCGGTTCGAGCTGGACCGAGCAATAG 1205
Query 1206 TATTAGTGGCAAACTCGTGTTTTTTCGTGGGATTGAAGAAGGCTGTATTGATGTTCATGC 1265
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1206 TATTAGTGGCAAACTCGTGCTTTTCCGTGGGATTGAAGAAGGCTGTATTGATGTTCATGC 1265
Query 1266 GTTTCTATTGCCCGACGTACTTGTGAAACTACTGGCTGACGTGGAATTTCTGGAGAAGTG 1325
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1266 GTTTCTATTGTCCGACGTACTTGTGAAACTACTAGCTGACGTGGAATTTCTGGAGAA-TG 1324
Query 1326 TGGCTA 1331
||||||
Sbjct 1325 TGGCTA 1330
> Ahg948067 jgi|Araly1|948067|scaffold_704296.1
Length=1356
Score = 586 bits (317), Expect = 1e-166
Identities = 986/1295 (76%), Gaps = 102/1295 (8%)
Strand=Plus/Plus
Query 20 TTTCCTCAAGCATTGTTCGACCTC-AAATCATAAACCAAGA-AGG-TCGTGA-AAAGATC 75
|||| || ||||||||||| || | ||| ||||| ||| | || |||| | |||||||
Sbjct 40 TTTCTTCGAGCATTGTTCGTCC-CAAAAAGATAAA-CAA-ATCGGATCGT-ACAAAGATC 95
Query 76 CATCTAACTCCATTTGATCTTAATCTTCTCT-ATGTTGATTATACTCAAAGAGGTCTTCT 134
||| ||||||||| ||||||||| ||||| | || ||| |||| ||||||||||||||||
Sbjct 96 CATTTAACTCCATATGATCTTAAACTTCT-TAATTTTGCTTATCCTCAAAGAGGTCTTCT 154
Query 135 CTTCCCCAAACCCGAC-CCGGAAACCCATTTCATCTC-TCGATT-AAGAACCTCTCTTTC 191
|||||| ||||||||| | | ||||||| ||||| | |||||| ||| ||||||||||
Sbjct 155 CTTCCCAAAACCCGACGAC-GTAACCCATATCATC-CATCGATTAAAG-GCCTCTCTTTC 211
Query 192 -TTCTGC-TCTAGATATTTACTTCCCCTTCGCTGGTCGTCTTAACAAAGTTGAA-AATCA 248
| ||| | | || || |||||||| |||||||||||||| ||||| |||| || ||
Sbjct 212 GAT-TGCAT-TGGAAATCTACTTCCCGTTCGCTGGTCGTCTCGTCAAAG-TGAACAACCA 268
Query 249 TGAAGACGAA-ACGGTGTCGTTTTACATCAATTGTGACGGCTCTGGTGCTAAATTCATCC 307
|||||| || || ||||||||||||||| | || ||| |||| || |||| |||| | |
Sbjct 269 TGAAGA-TAACACAGTGTCGTTTTACATCGACTGCGACAGCTCCGGCGCTAGATTCGTTC 327
Query 308 ATGCCGTA-TCCGATTCTGTTTCGGTAAGCGATCTT-CTTCGACCTGATGGCTCTGTTCC 365
| ||| | | ||| || || || | || |||| || |||| || | ||| |||||||||
Sbjct 328 ACGCCAAAGT-CGAATCCGTCTCCGCAAACGAT-TTCCTTCAACATTATGACTCTGTTCC 385
Query 366 TGACTTTTTCAGGAT-TTTCTATCCCATG--AACGGTGTCAAAAGCATCGACGGCCTCTC 422
||| ||| ||| | ||||| | || || |||| | |||||||| | || || ||||
Sbjct 386 TGAATTTAAAAGG-TGTTTCT-TTCC-TGCTAACGATCTCAAAAGCTTTGATGGTGTCTC 442
Query 423 GGAGCCCTTGCTTGCTTTACAAGTTACCGAGA-TGAGAGATGGAGTTTTCATCGGTTTTG 481
|||||||||||||| || ||||| ||||||| | || |||||| |||||||| ||||||
Sbjct 443 TGAGCCCTTGCTTGCGTTGCAAGTCACCGAGATTAAG-GATGGATTTTTCATCAGTTTTG 501
Query 482 GTTACAATCACATGGTCGCAGACGGTGCTTCCATCTGGAATTTCTT-CAGGACTTGGTCA 540
|||||||||||||||| || || ||| ||||| ||||||||||||| || ||||||||
Sbjct 502 GTTACAATCACATGGTGGCCGATGGTTCTTCCTTCTGGAATTTCTTCCA-CACTTGGTCT 560
Query 541 AAGATTTGCTCT-AATGG-TCAACGGGAGAAT-CTTCAACCTCTTGCTCTCAAAGGATT- 596
||||| || | | ||||| || | | | || | ||| ||||||| ||||||| ||||
Sbjct 561 AAGATCTG-TATGAATGGTTCGA-GTTCGGATAC-TCACCCTCTTGTTCTCAAA-GATTG 616
Query 597 GTTCGTGGACGGGA-TGGATTTCCCGATACATATTCCGGTTTCAGACACAGAGACGTCAC 655
|||| | ||| | | || | |||||| ||||| || |||||||| || | || | |
Sbjct 617 GTTCCTTGAC-AAAGTCGAATACCCGATCCATATGCCAGTTTCAGAAACGGGGA-G--GC 672
Query 656 CACCAAGCCGTGAGCTTTCTCCGACATTCAAAGAGAGAGTTTTTCACTTCACAAAGAGGA 715
||||||| |||| | ||| | | | |||||||||||||||||||||||||||| ||
Sbjct 673 CACCAAGATGTGA--AAT-TCC-A-ACT-AAAGAGAGAGTTTTTCACTTCACAAAGACGA 726
Query 716 ATATCTCAGATCTCAAAGCTAAAGTCAACG-GAGAAATTGGCTTGCG-TGACCAT-AAAG 772
||||||||||||| || || ||| ||||| | || ||| ||| | ||| || |||
Sbjct 727 ATATCTCAGATCTTAAGGCGGAAGCCAACGCG-GATATTA-CTTCCACTGAT-ATGAAAA 783
Query 773 TCTCGTCC-TTACAAGCGGTCTCGGCTCA-CATGTGGCGATCAATCATTAGACACAGTGG 830
| |||||| || ||||| || | |||||| | | ||| |||||| || | |||||||||
Sbjct 784 TATCGTCCCTT-CAAGCTGTTTTGGCTCATC-TATGGATATCAATTATCAAACACAGTGG 841
Query 831 TCTAAACCAAGAAGAAAAGACGCGTTGCT-TTGTAGCAGTGGATCTAAGGCAG-AGACTA 888
| |||||| ||||||| | || | ||| | ||||||| | ||| | || || || ||
Sbjct 842 TTTAAACCGAGAAGAAGATACACATTG-TATTGTAGCTGCAGATATGAGA-AGGAGGTTA 899
Query 889 AACCCTCCGCTTGACAAAGAGTGTTTTGGTCATGTGA-TCTAT-AACTCGGTAGTTACAA 946
|||||||| ||||| ||||||||||| || |||||| || || || || | | |||
Sbjct 900 AACCCTCCTCTTGAGAAAGAGTGTTTCGGGAATGTGACTC-ATCAAG-CGATTGCAACAG 957
Query 947 CCACAG-TGGGGGAGTTGCATG-ATCAGGGTCTAGGGTGGGCTTTTTTGCAAATAAATAA 1004
|| || |||| ||| | | || |||| || ||||| ||||| ||||||||| |||||
Sbjct 958 CCG-AGGTGGGAGAGAT-CTTGGATCATGGACTAGGCTGGGCCGCTTTGCAAATTAATAA 1015
Query 1005 T-ATGTTGAGATCTTTGACGAATGAAGACTATA-GA-ATTTATGCTGAGAATTGGGTTAG 1061
| || |||| | | ||||||||| | || | | |||| || ||||||||||||||
Sbjct 1016 ACAGGT-GAGAACACTAACGAATGAAAATTACAAGGCATTT--GCGGAGAATTGGGTTAG 1072
Query 1062 AAATATGAAGATTC--AAAAATCAGGTCTTGGAA---GTA-AAATGACTAGGGACTC-TG 1114
|||| ||||| ||| ||||| || || ||||| ||| ||| | || | ||| |
Sbjct 1073 AAATGTGAAG-TTCCCAAAAA-CAAGTGGTGGAATTAGTAGAAAGG-CT-GATACTTATT 1128
Query 1115 TAATTGTGTCAAGCTCTCC-TCGGTTTGAAGTGTACGATAACGATTTCGGTTGGGGCAAA 1173
| |||| |||||||||| | |||||||||||||||| ||||||||||||||||| |||
Sbjct 1129 TGATTGCCACAAGCTCTCCAT-GGTTTGAAGTGTACGACAACGATTTCGGTTGGGGAAAA 1187
Query 1174 CCGATAGCGGTTCGAGCTGGACCGAGTAACAGTATTAGTGGCAAACTCGT-GTTTTTTCG 1232
|| || || |||||||||| |||| | || |||| || | ||| || |||||| |
Sbjct 1188 CCAATTGCAGTTCGAGCTGAACCGGGCAATGGTATCGGTATCTCACTTGTAGTTTTTA-G 1246
Query 1233 TGGGA-TTGAAGAAGGCTGTATTGATGTTCATGCG 1266
||| ||||||||||| ||||||||||| |||||
Sbjct 1247 -GGGTCTTGAAGAAGGCAGTATTGATGTTAATGCG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5