BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50295.1 Length=867 Score E Sequences producing significant alignments: (Bits) Value Ahg937864 jgi|Araly1|937864|scaffold_502055.1 1096 0.0 Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937 102 4e-21 > Ahg937864 jgi|Araly1|937864|scaffold_502055.1 Length=1031 Score = 1096 bits (593), Expect = 0.0 Identities = 790/883 (89%), Gaps = 21/883 (2%) Strand=Plus/Plus Query 1 CAAGAGTGAGGAAGATTTGCTCCGGGAGCAGGAGCGCAAAAGAAGGATAGAAAAACTACG 60 ||||| ||||||||||||||||||| |||||||| | ||||||| | ||||||| |||| Sbjct 132 CAAGAATGAGGAAGATTTGCTCCGGAAGCAGGAGATCGAAAGAAGAAAAGAAAAATTACG 191 Query 61 GAAATTTATGC-G-GCC---C----CGGACAGAACTAAGAAG-CATT-T-ATCAGCGCGA 108 ||||| ||| | | || | || ||||||||| ||| | || | ||||| | || Sbjct 192 GAAATATATACAGAACCGAACAAAACGTTCAGAACTAAAAAGCCTTTATGATCAGTGTGA 251 Query 109 GAAGGACGGTGAAAAGATGGAATCCGAAGGAGTACCGATTCACAAGATGTTAGCTTCTTA 168 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GGTGGACGGTGAAAAGATGGAATCCGAAGGAGTACCGATTCACAAGATGTTAGCTTCTTA 311 Query 169 CATAT-ATGTATTTGACCTAAATGGAATTGAAAAGTATTTGAACAAGTTAGAGGAGAAAA 227 ||||| | | ||||||| ||| ||||| ||||||||||||||||||||||||||||||| Sbjct 312 CATATCA-GAATTTGACGTAACGGGAATGGAAAAGTATTTGAACAAGTTAGAGGAGAAAA 370 Query 228 GACCAAAGGGATTTGCTTTAGATATGCTGCGTAAGTCAGAGCCGTTACTGGTTACTAATG 287 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 371 GACCAAAGGGATTTGCTTTAGCTATGCTGCGTAAGTCAGAGCCGTTACTGGTTACTAATG 430 Query 288 AGTATTACAATATCCTCGGACCATTTAGAGTCTTTCGGATTCTCAGGGAAA-TGTATAAG 346 |||||||| | |||||||||||| ||||||||||| || ||||||| | | |||||| | Sbjct 431 AGTATTACGACATCCTCGGACCAATTAGAGTCTTTGGGGCTCTCAGG-ATACTGTATAGG 489 Query 347 CGTTTCGGAGAAAAGGAAGACCTTACGCCGTTTGTGGAACTTAGCTAAGGACATGAAAGT 406 |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| Sbjct 490 CGTTTCGGAGAAAAGGAAGACCTT-CGGCGTTTGTGGAACTTAGCTAGGGACATGAAAGC 548 Query 407 GTCTAAGGACATCAATGAATATAGTTGCATGATTCTGGCGTTGTGGTTGAAAGATGATAT 466 || |||| |||||||||||||| ||||| |||||||||||| ||||||||||| ||||| Sbjct 549 GTTTAAGTTCATCAATGAATATATTTGCACGATTCTGGCGTTTTGGTTGAAAGACGATAT 608 Query 467 CGAAGGGGCTCACGAACTTCTTGAAGAGTGGGATACCGGAGAGCATCATC-TTTCCAAAG 525 ||||||||||||| || ||||||||||||||||||||||||| |||| | ||| || | Sbjct 609 CGAAGGGGCTCACCAAGTTCTTGAAGAGTGGGATACCGGAGAACATCGTTATTTTGAA-G 667 Query 526 TCAAGCTAAACGATATTCTGGGTTTTGTTT-ACTGCAGAAAACTTGTAATACAAGGCACC 584 ||||| |||| |||||||||| |||| | | | |||||||||||||| ||||||||||| Sbjct 668 TCAAGATAAAAGATATTCTGGATTTT-TCTCAGTGCAGAAAACTTGTGATACAAGGCACT 726 Query 585 GAGTTGATGGTGAATTATATGTTCGAAGAACATAAGGAAGAGGAGGAGAAGAAGAAGACG 644 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 727 GAGTTGATGGTGAATGGCATGTTCGAAGAACATAAGGAAGAGGAGGAGAATAAGAAGACG 786 Query 645 GCAATGGAGGTGAGGCGTAACGGATGGGACCCCAAGAAAAATCTTGCATTGTCTGCGTAC 704 |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| Sbjct 787 GCAATGGAGGTGAGGCTTAACGGATGGGACCCAAAGAAAAATCTTGCTTTGTCTGCGTAC 846 Query 705 GCATGTGTTCAATATGTGGAGGGCCAGAGAGACATTGAGAGTACAGTTGATGTTTTGAGA 764 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 847 GCATGTTTTCAATATGTGGAGGGCCATAGAGACATTGAGAGTACAGTTGATGTTTTGAGA 906 Query 765 TTGTTGGGGAAGCGTGAGCCACAAGATGCTATTATGGATGAAGACCGATTGAGTAAGAAA 824 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| Sbjct 907 TTGTTGGGGAAGCGTGAGTCACAAGATGCTATTATGGGTGAAGACCGATTGAGTAGGAAA 966 Query 825 ATGGTAGAGGCAATGAGAGGAGGAGGATACGTTGGTGATGTTT 867 |||| |||||||||||||||||||||||||||||||| |||| Sbjct 967 TTGGTGGAGGCAATGAGAGGAGGAGGATACGTTGGTGAAGTTT 1009 > Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937 Length=1275 Score = 102 bits (55), Expect = 4e-21 Identities = 190/253 (75%), Gaps = 17/253 (7%) Strand=Plus/Plus Query 619 AGGAAGAGGAGG-AGA-AGAAGAAGACGGCAATGGAGGTGAGGC-G--TAACGGATGGGA 673 ||| |||||||| ||| || | ||| ||| ||||||| ||||| | | || |||| | Sbjct 1019 AGG-AGAGGAGGAAGAGAGTGGCAGA-GGCCATGGAGGGGAGGCTGCATGACCAATGGAA 1076 Query 674 CCCCAAGAAAAATC-TTGCAT-TGTCTGCGTACGCATGTGTTCAATATGTGGAGGGCCAG 731 ||| ||| | | | | || | |||| || || || || || |||||||||||||| | | Sbjct 1077 CCCAAAG-AGCAGCATGGC-TCTGTCCGCTTATGCCTGCGTGCAATATGTGGAGGGTCGG 1134 Query 732 AGAGACATTGAGAGTACAGTTGATGTTTTGAGATTGTTGGGGAAGCGTGAGCCACA-AGA 790 |||||||| |||||||||| | || ||||| | || ||||| ||| || | | Sbjct 1135 AGAGACATGGAGAGTACAGCCAACATTCTGAGACTCCTGAACAAGCGAGAG-CA-AGTGT 1192 Query 791 TGCTAT--TATGGATGAAGACCGATTGAGTAAGAAAATGGTAGAGGCAATGAGAGGAGGA 848 ||| || ||||| ||||||||||||| ||| ||||| |||||||||||||||||| Sbjct 1193 TGC-ATGCAATGGACAAAGACCGATTGAGCCTGAAGATGGTGGAGGCAATGAGAGGAGGA 1251 Query 849 GGATACGTTGGTG 861 ||||||||||||| Sbjct 1252 GGATACGTTGGTG 1264 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32099496114 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5