BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50295.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937864 jgi|Araly1|937864|scaffold_502055.1 1096 0.0
Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937 102 4e-21
> Ahg937864 jgi|Araly1|937864|scaffold_502055.1
Length=1031
Score = 1096 bits (593), Expect = 0.0
Identities = 790/883 (89%), Gaps = 21/883 (2%)
Strand=Plus/Plus
Query 1 CAAGAGTGAGGAAGATTTGCTCCGGGAGCAGGAGCGCAAAAGAAGGATAGAAAAACTACG 60
||||| ||||||||||||||||||| |||||||| | ||||||| | ||||||| ||||
Sbjct 132 CAAGAATGAGGAAGATTTGCTCCGGAAGCAGGAGATCGAAAGAAGAAAAGAAAAATTACG 191
Query 61 GAAATTTATGC-G-GCC---C----CGGACAGAACTAAGAAG-CATT-T-ATCAGCGCGA 108
||||| ||| | | || | || ||||||||| ||| | || | ||||| | ||
Sbjct 192 GAAATATATACAGAACCGAACAAAACGTTCAGAACTAAAAAGCCTTTATGATCAGTGTGA 251
Query 109 GAAGGACGGTGAAAAGATGGAATCCGAAGGAGTACCGATTCACAAGATGTTAGCTTCTTA 168
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GGTGGACGGTGAAAAGATGGAATCCGAAGGAGTACCGATTCACAAGATGTTAGCTTCTTA 311
Query 169 CATAT-ATGTATTTGACCTAAATGGAATTGAAAAGTATTTGAACAAGTTAGAGGAGAAAA 227
||||| | | ||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 312 CATATCA-GAATTTGACGTAACGGGAATGGAAAAGTATTTGAACAAGTTAGAGGAGAAAA 370
Query 228 GACCAAAGGGATTTGCTTTAGATATGCTGCGTAAGTCAGAGCCGTTACTGGTTACTAATG 287
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 371 GACCAAAGGGATTTGCTTTAGCTATGCTGCGTAAGTCAGAGCCGTTACTGGTTACTAATG 430
Query 288 AGTATTACAATATCCTCGGACCATTTAGAGTCTTTCGGATTCTCAGGGAAA-TGTATAAG 346
|||||||| | |||||||||||| ||||||||||| || ||||||| | | |||||| |
Sbjct 431 AGTATTACGACATCCTCGGACCAATTAGAGTCTTTGGGGCTCTCAGG-ATACTGTATAGG 489
Query 347 CGTTTCGGAGAAAAGGAAGACCTTACGCCGTTTGTGGAACTTAGCTAAGGACATGAAAGT 406
|||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 490 CGTTTCGGAGAAAAGGAAGACCTT-CGGCGTTTGTGGAACTTAGCTAGGGACATGAAAGC 548
Query 407 GTCTAAGGACATCAATGAATATAGTTGCATGATTCTGGCGTTGTGGTTGAAAGATGATAT 466
|| |||| |||||||||||||| ||||| |||||||||||| ||||||||||| |||||
Sbjct 549 GTTTAAGTTCATCAATGAATATATTTGCACGATTCTGGCGTTTTGGTTGAAAGACGATAT 608
Query 467 CGAAGGGGCTCACGAACTTCTTGAAGAGTGGGATACCGGAGAGCATCATC-TTTCCAAAG 525
||||||||||||| || ||||||||||||||||||||||||| |||| | ||| || |
Sbjct 609 CGAAGGGGCTCACCAAGTTCTTGAAGAGTGGGATACCGGAGAACATCGTTATTTTGAA-G 667
Query 526 TCAAGCTAAACGATATTCTGGGTTTTGTTT-ACTGCAGAAAACTTGTAATACAAGGCACC 584
||||| |||| |||||||||| |||| | | | |||||||||||||| |||||||||||
Sbjct 668 TCAAGATAAAAGATATTCTGGATTTT-TCTCAGTGCAGAAAACTTGTGATACAAGGCACT 726
Query 585 GAGTTGATGGTGAATTATATGTTCGAAGAACATAAGGAAGAGGAGGAGAAGAAGAAGACG 644
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 727 GAGTTGATGGTGAATGGCATGTTCGAAGAACATAAGGAAGAGGAGGAGAATAAGAAGACG 786
Query 645 GCAATGGAGGTGAGGCGTAACGGATGGGACCCCAAGAAAAATCTTGCATTGTCTGCGTAC 704
|||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 787 GCAATGGAGGTGAGGCTTAACGGATGGGACCCAAAGAAAAATCTTGCTTTGTCTGCGTAC 846
Query 705 GCATGTGTTCAATATGTGGAGGGCCAGAGAGACATTGAGAGTACAGTTGATGTTTTGAGA 764
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 847 GCATGTTTTCAATATGTGGAGGGCCATAGAGACATTGAGAGTACAGTTGATGTTTTGAGA 906
Query 765 TTGTTGGGGAAGCGTGAGCCACAAGATGCTATTATGGATGAAGACCGATTGAGTAAGAAA 824
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 907 TTGTTGGGGAAGCGTGAGTCACAAGATGCTATTATGGGTGAAGACCGATTGAGTAGGAAA 966
Query 825 ATGGTAGAGGCAATGAGAGGAGGAGGATACGTTGGTGATGTTT 867
|||| |||||||||||||||||||||||||||||||| ||||
Sbjct 967 TTGGTGGAGGCAATGAGAGGAGGAGGATACGTTGGTGAAGTTT 1009
> Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937
Length=1275
Score = 102 bits (55), Expect = 4e-21
Identities = 190/253 (75%), Gaps = 17/253 (7%)
Strand=Plus/Plus
Query 619 AGGAAGAGGAGG-AGA-AGAAGAAGACGGCAATGGAGGTGAGGC-G--TAACGGATGGGA 673
||| |||||||| ||| || | ||| ||| ||||||| ||||| | | || |||| |
Sbjct 1019 AGG-AGAGGAGGAAGAGAGTGGCAGA-GGCCATGGAGGGGAGGCTGCATGACCAATGGAA 1076
Query 674 CCCCAAGAAAAATC-TTGCAT-TGTCTGCGTACGCATGTGTTCAATATGTGGAGGGCCAG 731
||| ||| | | | | || | |||| || || || || || |||||||||||||| | |
Sbjct 1077 CCCAAAG-AGCAGCATGGC-TCTGTCCGCTTATGCCTGCGTGCAATATGTGGAGGGTCGG 1134
Query 732 AGAGACATTGAGAGTACAGTTGATGTTTTGAGATTGTTGGGGAAGCGTGAGCCACA-AGA 790
|||||||| |||||||||| | || ||||| | || ||||| ||| || | |
Sbjct 1135 AGAGACATGGAGAGTACAGCCAACATTCTGAGACTCCTGAACAAGCGAGAG-CA-AGTGT 1192
Query 791 TGCTAT--TATGGATGAAGACCGATTGAGTAAGAAAATGGTAGAGGCAATGAGAGGAGGA 848
||| || ||||| ||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 1193 TGC-ATGCAATGGACAAAGACCGATTGAGCCTGAAGATGGTGGAGGCAATGAGAGGAGGA 1251
Query 849 GGATACGTTGGTG 861
|||||||||||||
Sbjct 1252 GGATACGTTGGTG 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5