BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50300.1 Length=1452 Score E Sequences producing significant alignments: (Bits) Value Ahg485383 jgi|Araly1|485383|fgenesh2_kg.5__1375__AT3G50300.1 1568 0.0 Ahg937866 jgi|Araly1|937866|scaffold_502057.1 340 1e-92 > Ahg485383 jgi|Araly1|485383|fgenesh2_kg.5__1375__AT3G50300.1 Length=1239 Score = 1568 bits (849), Expect = 0.0 Identities = 1074/1182 (91%), Gaps = 17/1182 (1%) Strand=Plus/Plus Query 268 GTCCTCTCTCTCTAC-G-T-CTCTAGAGATCTACTTCCCCTTAGCTGGTCGTCTTGTCAA 324 ||||||||||||| | | | || |||||||||||||||| || || |||||||||||||| Sbjct 61 GTCCTCTCTCTCT-CTGCTGCTTTAGAGATCTACTTCCCTTTCGCGGGTCGTCTTGTCAA 119 Query 325 AGTCAACAACCATGAAGACAATACGGTGTCGTTTTACATCGACTGTGACGACGGCCGTGG 384 ||| |||||||||||||| |||||| | ||| |||||||||||||||||||||||||||| Sbjct 120 AGTGAACAACCATGAAGATAATACGATATCGCTTTACATCGACTGTGACGACGGCCGTGG 179 Query 385 TGTCAAATTT-GTCCATGCTATAGCCGAATCTGTCTCGGTAAGCGATATCCTTCAACCTC 443 || | | ||| |||||||| ||||| |||||| ||||||||||||||||| |||| |||| Sbjct 180 TG-CCAGTTTCGTCCATGCCATAGCAGAATCTATCTCGGTAAGCGATATCTTTCACCCTC 238 Query 444 ATGGCTCTGTTCCTGACTTTTTCAGGCTTTTCTTTCCCATGAACGGTGTTAGAAGCATCG 503 |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| Sbjct 239 ATGGCTCTGTTCCTGACTTTTTCAAGCTTTTCTTCCCCGTGAACGGTGTTAGAAGCATCG 298 Query 504 ACGGGCTCTCAGAGCCCTTACTTGCTTTACAAGTCACCGAGATAAAAGATGGAATCGTCA 563 |||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 299 ACGGACTCTCGGAGCCCTTGCTTGCTGTACAAGTCACCGAGATAAAAGATGGAATCGTCA 358 Query 564 TTAGTTTCGGTTACAACCACTTGGTGGCTGATGGTTCTTCTATGTGGAACTTTATCCACG 623 |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 359 TTAGTTACGGTTACAACCACTTGGTGGCCGATGGTTCTTCTATGTGGAAATTTATCCACG 418 Query 624 TTTGGTCAAAGCTTTGCTTGAATGGTCAGTGGGAG-AT--TCATCAGCCTCTAGTCCTCA 680 |||||||||| ||| |||||||||| | |||||| || |||||||||||| ||||||| Sbjct 419 GTTGGTCAAAGATTTTCTTGAATGGTGAATGGGAGAATCATCATCAGCCTCTTGTCCTCA 478 Query 681 GAGGATGGTTCCTCGACAACATTGATTTCCCTATTCATATTCCGGCTTCAGAGATAGAGA 740 ||||||||||||||||||| || |||||||| || |||||||||| ||| |||||||||| Sbjct 479 GAGGATGGTTCCTCGACAAGATCGATTTCCCGATCCATATTCCGGTTTCGGAGATAGAGA 538 Query 741 CAGAGAGGG-CAAGAAATCGTGAAGTTTCAACTAAGGAGAGAGTTTTTCACTTCACAAAA 799 ||||||||| || |||||||||| ||| || || |||||||||||||||||||||||| Sbjct 539 CAGAGAGGGTGAA-AAATCGTGAAACTTCGACGAAAGAGAGAGTTTTTCACTTCACAAAA 597 Query 800 GAGAAACTTTCAGATCTCAAAGCTAAAGCTAACGACGAAATAGGCTCAAGCGACATAAAA 859 |||||| ||||| |||| |||||||||||||||| |||||||| |||||| |||||||| Sbjct 598 GAGAAAATTTCATATCTTAAAGCTAAAGCTAACGGCGAAATAGACTCAAGTGACATAAAT 657 Query 860 ATATCATCTCTTCAAGCAGTTTTGGCTCATCTATGGCGATCAATAGTTAGACACAGTGGT 919 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 658 ATATCATCCCTTCAAGCTGTTTTGGCACATCTATGGCGATCAATAGTTAGACACAGTGGT 717 Query 920 CTAAACCAAGAAGAAGAGAGTCGCTGCGGAGTAGCAGCAGATTTTAGGCAGAGGCTAAAC 979 ||||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct 718 CTAAACCGAGAAGAAGAGAGTCATTGCGGTGTAGCAGCGGATTTCAGGCAGAGGCTAAAC 777 Query 980 CCTCCGCTTGATAAAGACTGTTTTGGTAATGTAGCCAATCTTGGGTTAACTACAGCCACA 1039 ||||| |||||||||||||||||||| |||||||||||||||||| | |||||||||| Sbjct 778 CCTCCACTTGATAAAGACTGTTTTGGCAATGTAGCCAATCTTGGGATGGCTACAGCCACC 837 Query 1040 GTGGGGGATTTGCTCGATCGTGGACTGGGATGGGCTGCTTTGCAAATAAATAAAACTGTG 1099 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GTGGGAGATTTGGTCGATCGTGGACTGGGATGGGCTGCTTTGCAAATAAATAAAACTGTG 897 Query 1100 AGGTTGCACACGAATGAAAACTTTAGAACTTTTTCTGAGAATTGGGTTAGAAATGGTAAG 1159 |||| ||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 898 AGGTCGCAAACGAATGAAGACTATAGAACTTTTGCTGAGAATTGGGTTAGAAATGGTAAG 957 Query 1160 ATCCCAAGAATTGATGTTAGAAGTAGAATGGGTGATCATGGTTTTATGGTCAGTAACTCT 1219 ||||||||||||||||||||||||| || ||||||||||| |||||| |||| ||||||| Sbjct 958 ATCCCAAGAATTGATGTTAGAAGTAAAAGGGGTGATCATGTTTTTATTGTCAATAACTCT 1017 Query 1220 CCTTGGTTCCAAGTGTACGATAATGATTTCGGTTTAGGTAAACCGATGGCTGTTCGAGCT 1279 ||||||||| |||| || ||||||||||||||||| ||||||||||| || ||||||||| Sbjct 1018 CCTTGGTTCAAAGTTTATGATAATGATTTCGGTTTGGGTAAACCGATTGCCGTTCGAGCT 1077 Query 1280 GGACCGGCTAATGGCATTGGTGGCAAGCTTGTAGTTTTTCGAGGGATCGAAGAAGGAAGT 1339 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 GGACCGGCAAATGGTATTGGTGGCAAGCTTGTAGTTTTTCGAGGGATCGAAGAAGGAAGT 1137 Query 1340 ATCGATGTCCATGCGATATTGACCTTATCGTTATGGTCTGATGTGTTACTGAACTTATTT 1399 |||||||| ||||||||||||||||| ||||||||||| |||||| || ||||||||||| Sbjct 1138 ATCGATGTTCATGCGATATTGACCTTCTCGTTATGGTCCGATGTGCTAGTGAACTTATTT 1197 Query 1400 GATGATGTTGAATCT--T-TGGAGAATGTAA---TTACATGA 1435 ||||||||||||||| | |||||||||||| |||||||| Sbjct 1198 GATGATGTTGAATCTACTATGGAGAATGTAACAATTACATGA 1239 > Ahg937866 jgi|Araly1|937866|scaffold_502057.1 Length=592 Score = 340 bits (184), Expect = 1e-92 Identities = 393/487 (81%), Gaps = 42/487 (9%) Strand=Plus/Plus Query 97 TGTGACCGTGATTTCTTCGAGCATTGTTCAACCCGGAAACGCCAGGCATTCGGGTCG-GG 155 ||||||||||||||||||||||||||||||||| |||||| || || ||| |||| || Sbjct 33 TGTGACCGTGATTTCTTCGAGCATTGTTCAACCTGGAAACATCACTCAATCGAGTCGAGG 92 Query 156 AAAAGATCCATCTCACTCCATCCGATCTTAGCCTTCTCTATCTTAATTACCCTCAAAGAA 215 ||| |||||||||| || || | ||| | ||| | | | |||||||||| Sbjct 93 AAA-GATCCATCTC-CT---TC---T-TTA---T-CTCGGT-T-A----CCCTCAAAGAG 133 Query 216 GTCTCCTCTTCCCCAAACCCTACCCGGAAACCCGGTTCATCTCTCGGTTAAAGTCCTCTC 275 ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| Sbjct 134 GTCTCCTCTTCCCCAAACCAGACCCGGAAACCCGTTTCATCTCTCGGTTAAAATCCTCTC 193 Query 276 TCTCTAC-GTCTCTAGAGATCTACTTCCCCTTAGCTGGTCGTCTTGTCAAAGTCAACAAC 334 |||| | | ||||||| ||||||||||||||||||| ||||||||||||||| ||||| Sbjct 194 TCTCCGCTG-CTCTAGACATCTACTTCCCCTTAGCTG-TCGTCTTGTCAAAGTGAACAAT 251 Query 335 CATGAAGACAATACGGTGTCGTTTTACATCGACTGTGACGACGGCCG-T--GGTGTC-AA 390 || ||||| || ||||||||||||||||||||||| |||| | | | | ||| || || Sbjct 252 CACGAAGAGAACACGGTGTCGTTTTACATCGACTGCAACGATGACGGCTTAGGT-TCCAA 310 Query 391 ATTTGTCCATGCTATAGCCGAATCTGTCTCGGTAAGCGATATCCTTCAACCTCATGGCTC 450 ||| |||||||| ||||||||||| |||| || || ||| | || |||||| ||||||| Sbjct 311 ATTCGTCCATGCCATAGCCGAATCGGTCTATGTGAGTGATCTTCTCCAACCTGATGGCTC 370 Query 451 TGTTCCTGACTTTTTCAGGCTTTTCTTTCCCATG--AACGGTGTTAGAAGC-A-TCGACG 506 |||| |||||| ||||| | ||| |||||| || |||| | || ||| | |||| | Sbjct 371 TGTTTCTGACTCTTTCAAACATTT-TTTCCC-TGCGAACGAT-TTC-AAGATAATCGAAG 426 Query 507 GGC-TCTCAGA-GCCCTTACTTGCT-TTACAAGTCACCGAGATAAAAGATGGAATCGTCA 563 | | |||| || |||||| |||||| || |||||||||||||| ||||||||| || ||| Sbjct 427 G-CATCTC-GAAGCCCTTGCTTGCTATT-CAAGTCACCGAGATGAAAGATGGAGTCTTCA 483 Query 564 TTAGTTT 570 | ||||| Sbjct 484 TCAGTTT 490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54316689370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5