BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50300.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485383 jgi|Araly1|485383|fgenesh2_kg.5__1375__AT3G50300.1 1568 0.0
Ahg937866 jgi|Araly1|937866|scaffold_502057.1 340 1e-92
> Ahg485383 jgi|Araly1|485383|fgenesh2_kg.5__1375__AT3G50300.1
Length=1239
Score = 1568 bits (849), Expect = 0.0
Identities = 1074/1182 (91%), Gaps = 17/1182 (1%)
Strand=Plus/Plus
Query 268 GTCCTCTCTCTCTAC-G-T-CTCTAGAGATCTACTTCCCCTTAGCTGGTCGTCTTGTCAA 324
||||||||||||| | | | || |||||||||||||||| || || ||||||||||||||
Sbjct 61 GTCCTCTCTCTCT-CTGCTGCTTTAGAGATCTACTTCCCTTTCGCGGGTCGTCTTGTCAA 119
Query 325 AGTCAACAACCATGAAGACAATACGGTGTCGTTTTACATCGACTGTGACGACGGCCGTGG 384
||| |||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||
Sbjct 120 AGTGAACAACCATGAAGATAATACGATATCGCTTTACATCGACTGTGACGACGGCCGTGG 179
Query 385 TGTCAAATTT-GTCCATGCTATAGCCGAATCTGTCTCGGTAAGCGATATCCTTCAACCTC 443
|| | | ||| |||||||| ||||| |||||| ||||||||||||||||| |||| ||||
Sbjct 180 TG-CCAGTTTCGTCCATGCCATAGCAGAATCTATCTCGGTAAGCGATATCTTTCACCCTC 238
Query 444 ATGGCTCTGTTCCTGACTTTTTCAGGCTTTTCTTTCCCATGAACGGTGTTAGAAGCATCG 503
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 239 ATGGCTCTGTTCCTGACTTTTTCAAGCTTTTCTTCCCCGTGAACGGTGTTAGAAGCATCG 298
Query 504 ACGGGCTCTCAGAGCCCTTACTTGCTTTACAAGTCACCGAGATAAAAGATGGAATCGTCA 563
|||| ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 299 ACGGACTCTCGGAGCCCTTGCTTGCTGTACAAGTCACCGAGATAAAAGATGGAATCGTCA 358
Query 564 TTAGTTTCGGTTACAACCACTTGGTGGCTGATGGTTCTTCTATGTGGAACTTTATCCACG 623
|||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 359 TTAGTTACGGTTACAACCACTTGGTGGCCGATGGTTCTTCTATGTGGAAATTTATCCACG 418
Query 624 TTTGGTCAAAGCTTTGCTTGAATGGTCAGTGGGAG-AT--TCATCAGCCTCTAGTCCTCA 680
|||||||||| ||| |||||||||| | |||||| || |||||||||||| |||||||
Sbjct 419 GTTGGTCAAAGATTTTCTTGAATGGTGAATGGGAGAATCATCATCAGCCTCTTGTCCTCA 478
Query 681 GAGGATGGTTCCTCGACAACATTGATTTCCCTATTCATATTCCGGCTTCAGAGATAGAGA 740
||||||||||||||||||| || |||||||| || |||||||||| ||| ||||||||||
Sbjct 479 GAGGATGGTTCCTCGACAAGATCGATTTCCCGATCCATATTCCGGTTTCGGAGATAGAGA 538
Query 741 CAGAGAGGG-CAAGAAATCGTGAAGTTTCAACTAAGGAGAGAGTTTTTCACTTCACAAAA 799
||||||||| || |||||||||| ||| || || ||||||||||||||||||||||||
Sbjct 539 CAGAGAGGGTGAA-AAATCGTGAAACTTCGACGAAAGAGAGAGTTTTTCACTTCACAAAA 597
Query 800 GAGAAACTTTCAGATCTCAAAGCTAAAGCTAACGACGAAATAGGCTCAAGCGACATAAAA 859
|||||| ||||| |||| |||||||||||||||| |||||||| |||||| ||||||||
Sbjct 598 GAGAAAATTTCATATCTTAAAGCTAAAGCTAACGGCGAAATAGACTCAAGTGACATAAAT 657
Query 860 ATATCATCTCTTCAAGCAGTTTTGGCTCATCTATGGCGATCAATAGTTAGACACAGTGGT 919
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 ATATCATCCCTTCAAGCTGTTTTGGCACATCTATGGCGATCAATAGTTAGACACAGTGGT 717
Query 920 CTAAACCAAGAAGAAGAGAGTCGCTGCGGAGTAGCAGCAGATTTTAGGCAGAGGCTAAAC 979
||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct 718 CTAAACCGAGAAGAAGAGAGTCATTGCGGTGTAGCAGCGGATTTCAGGCAGAGGCTAAAC 777
Query 980 CCTCCGCTTGATAAAGACTGTTTTGGTAATGTAGCCAATCTTGGGTTAACTACAGCCACA 1039
||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 778 CCTCCACTTGATAAAGACTGTTTTGGCAATGTAGCCAATCTTGGGATGGCTACAGCCACC 837
Query 1040 GTGGGGGATTTGCTCGATCGTGGACTGGGATGGGCTGCTTTGCAAATAAATAAAACTGTG 1099
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTGGGAGATTTGGTCGATCGTGGACTGGGATGGGCTGCTTTGCAAATAAATAAAACTGTG 897
Query 1100 AGGTTGCACACGAATGAAAACTTTAGAACTTTTTCTGAGAATTGGGTTAGAAATGGTAAG 1159
|||| ||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 898 AGGTCGCAAACGAATGAAGACTATAGAACTTTTGCTGAGAATTGGGTTAGAAATGGTAAG 957
Query 1160 ATCCCAAGAATTGATGTTAGAAGTAGAATGGGTGATCATGGTTTTATGGTCAGTAACTCT 1219
||||||||||||||||||||||||| || ||||||||||| |||||| |||| |||||||
Sbjct 958 ATCCCAAGAATTGATGTTAGAAGTAAAAGGGGTGATCATGTTTTTATTGTCAATAACTCT 1017
Query 1220 CCTTGGTTCCAAGTGTACGATAATGATTTCGGTTTAGGTAAACCGATGGCTGTTCGAGCT 1279
||||||||| |||| || ||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1018 CCTTGGTTCAAAGTTTATGATAATGATTTCGGTTTGGGTAAACCGATTGCCGTTCGAGCT 1077
Query 1280 GGACCGGCTAATGGCATTGGTGGCAAGCTTGTAGTTTTTCGAGGGATCGAAGAAGGAAGT 1339
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGACCGGCAAATGGTATTGGTGGCAAGCTTGTAGTTTTTCGAGGGATCGAAGAAGGAAGT 1137
Query 1340 ATCGATGTCCATGCGATATTGACCTTATCGTTATGGTCTGATGTGTTACTGAACTTATTT 1399
|||||||| ||||||||||||||||| ||||||||||| |||||| || |||||||||||
Sbjct 1138 ATCGATGTTCATGCGATATTGACCTTCTCGTTATGGTCCGATGTGCTAGTGAACTTATTT 1197
Query 1400 GATGATGTTGAATCT--T-TGGAGAATGTAA---TTACATGA 1435
||||||||||||||| | |||||||||||| ||||||||
Sbjct 1198 GATGATGTTGAATCTACTATGGAGAATGTAACAATTACATGA 1239
> Ahg937866 jgi|Araly1|937866|scaffold_502057.1
Length=592
Score = 340 bits (184), Expect = 1e-92
Identities = 393/487 (81%), Gaps = 42/487 (9%)
Strand=Plus/Plus
Query 97 TGTGACCGTGATTTCTTCGAGCATTGTTCAACCCGGAAACGCCAGGCATTCGGGTCG-GG 155
||||||||||||||||||||||||||||||||| |||||| || || ||| |||| ||
Sbjct 33 TGTGACCGTGATTTCTTCGAGCATTGTTCAACCTGGAAACATCACTCAATCGAGTCGAGG 92
Query 156 AAAAGATCCATCTCACTCCATCCGATCTTAGCCTTCTCTATCTTAATTACCCTCAAAGAA 215
||| |||||||||| || || | ||| | ||| | | | ||||||||||
Sbjct 93 AAA-GATCCATCTC-CT---TC---T-TTA---T-CTCGGT-T-A----CCCTCAAAGAG 133
Query 216 GTCTCCTCTTCCCCAAACCCTACCCGGAAACCCGGTTCATCTCTCGGTTAAAGTCCTCTC 275
||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 134 GTCTCCTCTTCCCCAAACCAGACCCGGAAACCCGTTTCATCTCTCGGTTAAAATCCTCTC 193
Query 276 TCTCTAC-GTCTCTAGAGATCTACTTCCCCTTAGCTGGTCGTCTTGTCAAAGTCAACAAC 334
|||| | | ||||||| ||||||||||||||||||| ||||||||||||||| |||||
Sbjct 194 TCTCCGCTG-CTCTAGACATCTACTTCCCCTTAGCTG-TCGTCTTGTCAAAGTGAACAAT 251
Query 335 CATGAAGACAATACGGTGTCGTTTTACATCGACTGTGACGACGGCCG-T--GGTGTC-AA 390
|| ||||| || ||||||||||||||||||||||| |||| | | | | ||| || ||
Sbjct 252 CACGAAGAGAACACGGTGTCGTTTTACATCGACTGCAACGATGACGGCTTAGGT-TCCAA 310
Query 391 ATTTGTCCATGCTATAGCCGAATCTGTCTCGGTAAGCGATATCCTTCAACCTCATGGCTC 450
||| |||||||| ||||||||||| |||| || || ||| | || |||||| |||||||
Sbjct 311 ATTCGTCCATGCCATAGCCGAATCGGTCTATGTGAGTGATCTTCTCCAACCTGATGGCTC 370
Query 451 TGTTCCTGACTTTTTCAGGCTTTTCTTTCCCATG--AACGGTGTTAGAAGC-A-TCGACG 506
|||| |||||| ||||| | ||| |||||| || |||| | || ||| | |||| |
Sbjct 371 TGTTTCTGACTCTTTCAAACATTT-TTTCCC-TGCGAACGAT-TTC-AAGATAATCGAAG 426
Query 507 GGC-TCTCAGA-GCCCTTACTTGCT-TTACAAGTCACCGAGATAAAAGATGGAATCGTCA 563
| | |||| || |||||| |||||| || |||||||||||||| ||||||||| || |||
Sbjct 427 G-CATCTC-GAAGCCCTTGCTTGCTATT-CAAGTCACCGAGATGAAAGATGGAGTCTTCA 483
Query 564 TTAGTTT 570
| |||||
Sbjct 484 TCAGTTT 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5