BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50310.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937867 jgi|Araly1|937867|scaffold_502058.1 1402 0.0
Ahg951518 jgi|Araly1|951518|scaffold_803405.1 590 1e-167
> Ahg937867 jgi|Araly1|937867|scaffold_502058.1
Length=1072
Score = 1402 bits (759), Expect = 0.0
Identities = 975/1079 (90%), Gaps = 15/1079 (1%)
Strand=Plus/Plus
Query 175 TAAAAGCTT-TTGTTTCAATTTCAATGGAGTGGGTTCGAGGAGAAACAATTGGGTTCGGA 233
|||||| || ||||||||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 2 TAAAAG-TTGTTGTTTCAATTTC-ATGGAGTGGGTTCGAGGAGAAACAGTCGGATTCGGA 59
Query 234 ACCTTCTCTACTGTCAGTACAGCGACAAAGT-CTAGAAACTCCGGCGACTTTCCTGC-AC 291
|| || |||||||| ||| ||| ||||| | ||||| ||||||||||||| || || |
Sbjct 60 ACTTTTTCTACTGTAAGTGTAGCAACAAA-TACTAGAGACTCCGGCGACTTCCCGGCTA- 117
Query 292 TTATCGCTGTGAAGTCGACGGATGCTTATGGCGCCGCTTCACTCTCCAACGAGAAATCGG 351
|||| || ||||||||| | ||| |||| ||||||||||| ||||| || ||||||||||
Sbjct 118 TTATGGCCGTGAAGTCGTCAGATTCTTACGGCGCCGCTTCCCTCTCGAAGGAGAAATCGG 177
Query 352 TGTTGGATTCACTCGGTGATTGTCCTGAGATCATACGGTGTTACGGCGAGGATTC-AACG 410
|||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || ||||
Sbjct 178 TGTTGGATTCACTCGGTGATTGCCCTGAGATCGTACGATGTTACGGTGAGGA-TCTAACG 236
Query 411 GTGGAGAACGGAGAAGAGATGCATAACTTGTTATTAGAGTACGCTTCGAGAGGAAGCTTA 470
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 237 GTGGAGAACGGAGAAGTGATGCATAACTTGTTATTAGAGTACGCTTCAAGAGGAAGCTTA 296
Query 471 GCGAGTTACATG--AAGAAACTTGGCGGTGAGGGTTTACCGGAGTCCACCGTGCGTCGCC 528
|||| | |||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 297 GCGA-CT-CATGTTAAGAAACTTGGCGGTGAGGGTTTACCGGAGTCCACCGTACGCCGCC 354
Query 529 ACACAGGATCAGTGCTTCGAGGGTTACGTCACATCCACGCTAA-AGGGTTTGCACACTGC 587
|||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 355 ACACAGGATCGGTGCTTCGAGGGTTACGTCACATCCACGC-AATAGGGTTTGCTCACTGC 413
Query 588 GATATAAAACTCGCGAATATTCTGTTATTTAACGACGGCTCTGTTAAAATTGCCGATTTC 647
||||| ||||||| ||||||||||||||| ||||||||| | ||||| ||||||||||||
Sbjct 414 GATATTAAACTCGGGAATATTCTGTTATTCAACGACGGCGCCGTTAAGATTGCCGATTTC 473
Query 648 GGTTTGGCGATGAGAGTTGACGGAGATTTAACGGCGTTAAGAAAAAGTGTGGAGATTAGA 707
|| ||||| | |||||| || |||||||||||| ||| || |||||||||||||||||||
Sbjct 474 GGGTTGGCTAGGAGAGTAGATGGAGATTTAACGCCGTCAAAAAAAAGTGTGGAGATTAGA 533
Query 708 GGGACGCCGTTATACATGGCACCGGAATGTGTTAATGATAACGAGTATGGATCAGCGGCT 767
|||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 534 GGGACGCCGTTATATATGGCGCCGGAATCTGTTAATGAAAACGAGTATGGATCAGCGGCT 593
Query 768 GACGTGTGGGCTTTAGGATGTGCTGTAGTTGAGATGTTTAGTGGCAAAACGGCATGGAGT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 594 GACGTGTGGGCTTTAGGATGTGCTGTAGTTGAGATGTTTAGTGGCAAAACGGCGTGGAGT 653
Query 828 GTTAAAGAAGGATCACACTTCATGTCGCTTTTGATACGTATAGGTGTTGGTGATGAGTTA 887
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 654 GTGAAAGAAGGATCACACTTCATGTCGCTTTTGATACGTATCGGTGTTGGTGATGAGTTA 713
Query 888 CCGAAGATTCCAGAGATGTTGTCCGAAGAAGGCAAGGATTTTTTGTCGAAGTGTTTTGTT 947
||||||||||||||||||||||| |||||||| || |||||||||| |||||||||||||
Sbjct 714 CCGAAGATTCCAGAGATGTTGTCGGAAGAAGGAAAAGATTTTTTGTTGAAGTGTTTTGTT 773
Query 948 AAAGATCCAGCGAAAAGATGGACGGCTGAGATGCTTTTGAACCATTCGTTTGTAACCATT 1007
|||||||| | ||||||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct 774 AAAGATCCTGTGAAAAGATGGACGGCTGAGATGCTTTTAAACCATTCGTTCGTAGCCGTT 833
Query 1008 GATCTTGAAGATGATCACCGAGAAAACTTCGTTGTGAAGGTTAAGGATGAGGATAAAGTA 1067
|||||||||||| |||| |||||| |||||||||||||| |||| || ||||| ||||||
Sbjct 834 GATCTTGAAGATTATCATCGAGAAGACTTCGTTGTGAAGTTTAAAGAAGAGGAAAAAGTA 893
Query 1068 TTGATGTCTCCAAAGTGTCCTTTTGAGTTTGATGATTGGGATTCTTTTACATTGGATTCA 1127
|||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 894 TTGATGTCTCCAAAGTGTCCTTTTGAGTTTCATGATTGGGAATCTTTTACATCGGATTCA 953
Query 1128 AACCCCTCGTTTGATTCTCCGGTGGAGAGACTTGGGAGTTTGGTTAGTGGTTCGATCCCT 1187
|| | ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 954 CACACGTCGTTGGATTCTCCGGTCGAGAGACTTGGGAGTTTGGTTAGTGGTTCGAGCCCT 1013
Query 1188 GATTGGTCTGTCGGTGGGAGTTGGCTTACAGTCCGGTGATGAAAGTTATATGAAAACAG 1246
|||||||||||||| ||||||||| | || ||||||| | | ||| |||| |||||||
Sbjct 1014 GATTGGTCTGTCGGCGGGAGTTGGGTCACGGTCCGGTAACGGGAGTGATATAAAAACAG 1072
> Ahg951518 jgi|Araly1|951518|scaffold_803405.1
Length=1076
Score = 590 bits (319), Expect = 1e-167
Identities = 686/854 (80%), Gaps = 61/854 (7%)
Strand=Plus/Plus
Query 194 TTCAATGGAGTGGGTTCGAGGAGAAACAATTGGGT-TCGGAACCTTCTCTACTGTCAGTA 252
||||||||||||| |||||||||||||||| || | | ||||| || ||||| || |||
Sbjct 18 TTCAATGGAGTGGATTCGAGGAGAAACAATCGGATAT-GGAACTTTTTCTACAGTAAGT- 75
Query 253 C-AGCGACAAAGTCT-AGAA--ACTCCGGCG-ACTTTCCTGCAC-TT-ATCGCTGTGAAG 305
| |||||| |||| | || | ||||||| || ||||| | | || || || || ||
Sbjct 76 CTAGCGACGCCGTCTAATAACGATTCCGGCGAAC-TTCCT-C-CGTTAATGGCCGTAAAA 132
Query 306 TC-GACGGA-TGCTTATGGCGCCGCTTCACTCTCCAACGAGAAATCGGTGT-TGGATTCA 362
|| | | || | | || ||||| |||| || ||||||||||| || | | ||| |
Sbjct 133 TCTG-CAGACT-CGTACGGCGCTACTTCGCTGGAGAACGAGAAATCAGT-TCTAGATAAA 189
Query 363 CTC-G-G-TGATTGTC--CTGAGATCATACGGTGTTACGGCGAGGATTC-AACGGTGGAG 416
||| | | ||||| | | |||||| |||| |||| ||||||||| || ||||| ||
Sbjct 190 CTCGGAGACGATTG-CAAC-GAGATCGTACGTTGTTTCGGCGAGGA-TCGGACGGTCGAA 246
Query 417 AACGGAGAAGAGATGCATAACTTGTTATTAGAGTACGCTTCGAGAGGAAGCTTAGCGAGT 476
|||||||||||||||||||| ||||| || || |||||||||||||||||||||| ||||
Sbjct 247 AACGGAGAAGAGATGCATAATTTGTTCTTGGAATACGCTTCGAGAGGAAGCTTAGAGAGT 306
Query 477 TA-CATGAAGAAACTT-GGCGGTGAGGGTTTACCGGAGTCCACCGTGCGTCGCCACACAG 534
|| | | |||||| || |||||||| ||| ||||||| ||||| || || || |||||||
Sbjct 307 TATC-TCAAGAAA-TTAGGCGGTGAAGGTCTACCGGAATCCACAGTACGCCGTCACACAG 364
Query 535 GATCAGTGCTTCGAGGGT-TACGTCACATCCACGCTAAAGGGTTTGCACACTGCGATATA 593
|||| ||||||||| ||| |||| |||||||||||||| || || || ||||||||| ||
Sbjct 365 GATCGGTGCTTCGA-GGTCTACGACACATCCACGCTAACGGATTCGCTCACTGCGATTTA 423
Query 594 AAACTCGCGAATATTCTGTT-ATTTAACGACGGCTCTGTTAAAATTGCCGATTTCGGTTT 652
||||||| ||||||||| || || |||||| | ||||| ||||| ||||| || ||
Sbjct 424 AAACTCGGGAATATTCT-TTGGTTCGGTGACGGCGCCGTTAAGATTGCTGATTTTGGATT 482
Query 653 GGCGATGA-GAGTTGACGGAGATTTAACGGCG-TTAA-GAAAAAGTGTGGAGATTAGAGG 709
||||| || || ||| || || |||||||| | || ||| ||| | ||||||||||
Sbjct 483 GGCGAAGAGGA-TTG--GG-GAAGTAACGGCGATAAATGAAGGAGT-T-CAGATTAGAGG 536
Query 710 GACGCCGTTATACATGGCACCGGAATGTGTTAATGATAACGAGTATGGATCAGCGGCTGA 769
|||||||| || ||||| ||||| | ||| || ||||||||||| ||||||| || |||
Sbjct 537 TACGCCGTTGTATATGGCGCCGGAGTCTGTAAACGATAACGAGTACGGATCAGAGGGTGA 596
Query 770 CGTGTGGGCTTTAGGATGTGCTGTAGTTGAGATGTTTAGTGGCAAAACGGCATGGAGTGT 829
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 597 CGTGTGGGCTTTAGGATGTGCTGTAGTTGAAATGTTTAGTGGCAAAACGGCATGGAGT-T 655
Query 830 TAAA-GAAGGATC-ACACTTCATGTCGCTT-TTGATACGTATAGGTGTTGGTGATGAG-T 885
|||| |||||||| | ||||||||||| || |||||||| || ||||||||||||||| |
Sbjct 656 TAAAAGAAGGATCGA-ACTTCATGTCG-TTGTTGATACGCATCGGTGTTGGTGATGAGCT 713
Query 886 TACCGAAGATTCCAGAG-ATGTTGTCCGAAGAAGGCAAGGATTTTTTGTCGAAGTGTTTT 944
| |||| |||||| ||| | |||||| ||| |||| || ||||||||| | ||||||||
Sbjct 714 T-CCGATGATTCCCGAGGA-GTTGTCGGAACAAGGAAAAGATTTTTTGACAAAGTGTTTC 771
Query 945 GTTAAAGATCC-AGCGAAA-AGATGGACGGCTGAGATGCTTTTGA-ACCATTCGTTTGTA 1001
||||||||||| | ||| ||||||||||||||||||||| | | ||||| | ||||||
Sbjct 772 GTTAAAGATCCTAA--AAAGAGATGGACGGCTGAGATGCTTCT-ACACCATCCATTTGTA 828
Query 1002 ACCATTGATCTTGA 1015
|| | ||| ||||
Sbjct 829 GCCGTCGATGTTGA 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5