BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50330.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485384 jgi|Araly1|485384|fgenesh2_kg.5__1376__AT3G50330.1 1530 0.0
Ahg496895 jgi|Araly1|496895|fgenesh2_kg.8__2711__AT5G67060.1 315 6e-85
> Ahg485384 jgi|Araly1|485384|fgenesh2_kg.5__1376__AT3G50330.1
Length=1042
Score = 1530 bits (828), Expect = 0.0
Identities = 958/1020 (94%), Gaps = 12/1020 (1%)
Strand=Plus/Plus
Query 53 TCTGTGATTCAGACACACAAAGCCCTAAATTTCAAGCTTTGTCAGTCCATCTTCTTCTTC 112
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 30 TCTGTGATTCAGACACACAAAACCCTAAATTTCAAGGTTTGTCAGTCCATCTTCTTCTTC 89
Query 113 CTCCATACCTTATCTCACCAGCTTCTCCATA-TCTCTCAAAGAAAAAACAAACCCTATAA 171
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 90 CTCCATACCTTATCTCACCAGCTTCTCCATATTCTCTCAAAG-GAAAACAAACCCTATAA 148
Query 172 ATTCCACAAAAAAGGAGGATGGATAACTCCGACATTCTAATGAACATGATGATGCAGCAG 231
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 149 ATTCCACAAAAAAGGAGGATGGATAACTCCGACATTTTGATGAACATGATGATGCAGCAG 208
Query 232 ATGGAGAAGCTTCCTGAACACTTCTCTAACTCAAACCCTAACCCTAATCCCCATAACATT 291
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 209 ATGGAGAAGCTTCCGGAACACTTCTCTAACTCAAACCCTAACCCTAATTCCCATAACATT 268
Query 292 ATGATGCTTTCTGAATCCAACACCCACCCGTTCTTCTTCAACCCCACTCATTCTCATCTC 351
|||||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 269 ATGATGCTCTCAGAATCCAACACCCACCCTTTCTTCTTCAACCCCACTCATACTCATCTC 328
Query 352 CCATTTGACCAAACCATGC-CTCACCACCAACCCGGTTTAAATTTCCGGTACGCCCCCTC 410
||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||
Sbjct 329 CCATTTGACCAAACCAT-CTCTCACCACCAACCCGGTTTAAGTTTCCGGTACGCTCCCTC 387
Query 411 CCCGTCATCATCTCTCCCGGAGAAGAGAGGAGGCTGCAGCGACAACGCCAACATGGCGGC 470
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 388 CACGTCATCATCTCTCCCGGATAAGAGAGGAGGCTGCAGCGACAACGCCAACATGGCGGC 447
Query 471 GATGAGAGAGATGATCTTTCGAATAGCCGTGATGCAGCCTATACATATTGATCCGGAATC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GATGAGAGAGATGATCTTTCGAATAGCCGTGATGCAGCCTATACATATTGATCCGGAATC 507
Query 531 CGTAAAGCCACCAAAGAGAAAGAACGTGAGGATCTCTAAGGATCCACAGAGCGTGGCAGC 590
||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 508 CGTGAAGCCGCCGAAGAGAAAGAACGTGAGGATCTCAAAGGACCCACAGAGCGTTGCTGC 567
Query 591 TCGGCATCGAAGGGAGAGGATAAGCGAGCGGATTCGGATTCTTCAGCGGCTTGTTCCCGG 650
| | ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 568 TAGACATAGAAGGGAGAGGATAAGCGAGCGGATTCGGATTCTTCAGCGGCTTGTACCTGG 627
Query 651 TGGGACTAAGATGGATACGGCGTCGATGCTCGATGAGGCTATCCATTACGTTAAGTTTCT 710
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 628 TGGGACTAAGATGGATACGGCATCGATGCTCGATGAGGCTATCCATTACGTTAAGTTTCT 687
Query 711 CAAGAAGCAAGTGCAGTCGCTGGAGGAACATGCGGTGGTTAACGGCGGAGGAATGACGGC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CAAGAAGCAAGTGCAGTCGCTGGAGGAACATGCGGTGGTTAACGGCGGAGGAATGACGGC 747
Query 771 GGTGGCCGGAGGAGCACTTGCGGGTACTGTTGGTGGAGGATATGGAGGAAAAGGGTGTGG 830
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 748 GGTGGCCGGAGGAGCACTGGCGGGGACTGTTGGTGGAGGATATGGAGGAAAAGGGTGTGG 807
Query 831 CATTATGCGGTCTGATCATCACCAGATGCTTGGAAATGCACAGATTCTTAGATGATGATG 890
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GACTATGCGGTCTGATCATCACCAGATGCTTGGAAATGCACAGATTCTTAGATGATGATG 867
Query 891 ATGTTGATTTTTAAATATATATCATATGTT-TATTAATATGACGGGAAA-AAATATTATC 948
||| |||| | || | || || |||| | |||||||||| ||| ||| ||||||||||
Sbjct 868 ATGATGATGATGAATTTTAAAT-ATATATCATATTAATATGCCGG-AAACAAATATTATC 925
Query 949 GA-GGGAGTTGAATTTAGTATCATGAAACTATGAGAGCAttttttttAAATGTTTTTATC 1007
|| ||||||| |||||||| |||||||||| |||||| ||||| |||||| ||||||
Sbjct 926 GAAGGGAGTTAAATTTAGTGTCATGAAACTCTGAGAGTATTTTA---AAATGTCTTTATC 982
Query 1008 TTTCCGGGTTTCGATAATGTTTGGGATGGTTAATTAACAATTTAAAAGTCAGACAACTTG 1067
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 983 TTTCCGGGTTTCGATAATGTTTGGGATGGTTAGTTAACAATTTTAAAGTCAGACAACTTG 1042
> Ahg496895 jgi|Araly1|496895|fgenesh2_kg.8__2711__AT5G67060.1
Length=1091
Score = 315 bits (170), Expect = 6e-85
Identities = 263/308 (85%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 460 AACATGGCGGCGATGAGAGAGATGATCTTTCGAATAGCCGTGATGCAGCCTATACATATT 519
|||||||| || ||| |||||||||||||||| || |||||||||||||| ||||||||
Sbjct 427 AACATGGCAGCTATGCGAGAGATGATCTTTCGCATCGCCGTGATGCAGCCGATACATATA 486
Query 520 GATCCGGAATCCGTAAAGCCACCAAAGAGAAAGAACGTGAGGATCTCTAAGGATCCACAG 579
||||| || | || |||||||| ||||| | |||||| ||||||||||| |||||||||
Sbjct 487 GATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAAGATCCACAG 546
Query 580 AGCGTGGCAGCTCGGCATCGAAGGGAGAGGATAAGCGAGCGGATTCGGATTCTT-CAGCG 638
|||||||| ||| ||||| |||||||||||||||||||| ||||||||||| || || ||
Sbjct 547 AGCGTGGCGGCTAGGCATAGAAGGGAGAGGATAAGCGAGAGGATTCGGATT-TTGCAACG 605
Query 639 GCTTGTTCCCGGTGGGACTAAGATGGATACGGCGTCGATGCTCGATGAGGCTATCCATTA 698
||||||||| |||||||| ||||||||||| || ||||||||||| || ||||| || ||
Sbjct 606 GCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGACGAAGCTATTCACTA 665
Query 699 CGTTAAGTTTCTCAAGAAGCAAGTGCAGTCGCTGGAGGAACATGCGGTGGTTAA---CGG 755
|| |||||| | ||||| || |||||||| |||||||| || ||||||||||| |||
Sbjct 666 TGTGAAGTTTTTAAAGAAACAGGTGCAGTCACTGGAGGAGCAGGCGGTGGTTAATGGCGG 725
Query 756 CGGAGGAA 763
|||||||
Sbjct 726 AGGAGGAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5