BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50340.1
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485385 jgi|Araly1|485385|fgenesh2_kg.5__1377__AT3G50340.1 2364 0.0
Ahg496899 jgi|Araly1|496899|fgenesh2_kg.8__2715__AT5G67020.1 828 0.0
> Ahg485385 jgi|Araly1|485385|fgenesh2_kg.5__1377__AT3G50340.1
Length=1469
Score = 2364 bits (1280), Expect = 0.0
Identities = 1414/1478 (96%), Gaps = 12/1478 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCGCCTATCATCTTTTTCCAGTTCGCTATCAGACATATTTGAAACCCCATAACT 60
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 TCTCTCTCGCCTATTATCTTTTT-CAGTTCGCTATCAGACATATCTGAAACCCCATAACT 59
Query 61 CATAAAGCTTCACTCTTTTCCACAATCTCTTACTCCAAAGTTTTCTTCTTTCCCCCCAAA 120
||||||||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 60 CATAAAGCTTCACTCTTTTCCAC-ATCTCTTACTCCAAAGTTTTGATC-TT-GTCCCAAA 116
Query 121 AAATTATAATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCTG 180
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 117 AAAAAAAAATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCGG 176
Query 181 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACAACACCAACGGTTAGAAACAGTC 240
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 177 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACGACTCCAACGGTTAGAAACAGCC 236
Query 241 TCGTCTCTTTCTCTTCTCTCGCCGATCAAGTAATCTCACACTTACACACTTCAAGGATCC 300
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 TCGTCTCTTTCTCATCTCTCGCCGAACAAGTAATCTCACACTTACACACTTCAAGGATCC 296
Query 301 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCTAGAGCAGAAGCAGAGTTTGCATTCG 360
|||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||
Sbjct 297 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCCAAAGCCGAAGCAGAGTTCGCATTCT 356
Query 361 CTTTTCCACCGGACCTCCGTGCTGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGATTTC 420
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 357 CTTTCCCACCGGACCTCCGTGCAGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGGTTTC 416
Query 421 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTCAGAGCTATGATCGATCTTCCTATCG 480
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 417 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTTAGGGCTATGATCGATCTTCCTATCG 476
Query 481 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTCTGGAGCAAATCTTGGGGTTTAAGAC 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTTTGGAGCAAATCTTGGGGTTTAAGAC 536
Query 541 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 596
Query 601 TGATACCAATCTTTGATCATTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGATACCAATCTTTGATCACTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 656
Query 661 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTTTCTGATTTCTTCG 720
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 657 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTATCTGATTTCTTCG 716
Query 721 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 776
Query 781 CGGTGAGTGAGAAATCAGCCGGGTCGTCGTCGTCTTCTTCATCAAATTTTTCGAGAATGA 840
||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 777 CGGTGAGTGAGAAATCAGCTGGGTCGTCGTCGTCTTCTTCGTCGAATTTTTCAAGAATGA 836
Query 841 GTTTAGATTCGGGTCGGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 900
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTTTAGATTCGGGTCAGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 896
Query 901 ACGCGGCGGTTGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 960
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACGCGACCGTGGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 956
Query 961 CATCGCCGGAGAGATATTTAGATTTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1020
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 957 CATCGCCGGAGAGATATCTAGAATTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1016
Query 1021 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1076
Query 1081 ATATTGTACACGTGTCAGCATCTGGtttttttGAGGGTGAAATGGTAATTTTGGATAATC 1140
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1077 ATATTGTCCACGTGTCAGCATCTGGTTTCTTTGAGGGTGAAATGGTAATTTTAGATAATC 1136
Query 1141 AAGCCGTTCTT-GATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1199
|||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAGCGGTT-TTAGATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1195
Query 1200 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1255
Query 1260 GAGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1319
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GGGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1315
Query 1320 GAGTCGGTTTCTCGGTCATGATTATTATTCCCCGATCGAGATTCTTTTCACTTTTAATTA 1379
||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||
Sbjct 1316 GAGTCGGTTTCTCGGTCATGATTATTA--CCC-GATCGAGATTCTTTAAACTTCTAATTA 1372
Query 1380 GACCTCAAAC-AATACGTTTATTAAAAACAACACACCATTAGATTTTAACGTTTTCAAAA 1438
||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1373 CCCCTCAAAAGAATACATTTATTATAAA-AACACACCATTAGATTTTAACGTTTTCAAAA 1431
Query 1439 A-GTCTAAATATGTGTAATCTTGCATTCGTTATTAGAA 1475
| ||||||||||||||||||||||||| ||||||||||
Sbjct 1432 AAGTCTAAATATGTGTAATCTTGCATTTGTTATTAGAA 1469
> Ahg496899 jgi|Araly1|496899|fgenesh2_kg.8__2715__AT5G67020.1
Length=1355
Score = 828 bits (448), Expect = 0.0
Identities = 986/1236 (80%), Gaps = 75/1236 (6%)
Strand=Plus/Plus
Query 129 ATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCTGGTCTCCGT 188
|||||||||||||| ||||||||||||||| | | || |||||||| || ||||||||
Sbjct 95 ATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAGCCGGTCTCCGC 154
Query 189 CGTCTCTCTGCTCGCGCCGCCGCACCAACAACACCAACGGTTAGAAACAGTCTCGTC--T 246
|||||||| |||||||||||||| ||| | || || | | | |||||||| | | || |
Sbjct 155 CGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTATGATCAGAAACAG-C-CTTCAAT 212
Query 247 CTTTCTCTTCTCTCGCCGATCAAGTAATCTCA-CA-CTTACACACTTCAAGG-ATCCAAG 303
||||||| || |||| ||| |||||||| | || |||| | | ||| ||| ||| ||
Sbjct 213 CTTTCTCCCCTTTCGCTGATAAAGTAATC-AATCATCTTA-AAAATTC-AGGTATCAAAA 269
Query 304 TCCAACCGGGTCTAACCGACTCCGAATTCGCTAGAG-CAGAAGCAGAGTTTGCATTCGCT 362
||||||||||||| ||||| |||| || || ||| | ||||| ||||||| ||| ||
Sbjct 270 TCCAACCGGGTCTCTCCGACACCGAGTTTGCCCGAGTC-GAAGCCGAGTTTGGTTTCACT 328
Query 363 TTTCCACCGGACCTCCGTGCTGTTCTCACCGCCGGT-T-TACCAGTCGGCGCC-GGATTT 419
|| ||||||||| |||||| | | |||||||||||| | | || ||||| || |||||
Sbjct 329 TTCCCACCGGACATCCGTGTTATCCTCACCGCCGGTATCT-CC-GTCGG-TCCAGGATTC 385
Query 420 CCAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTCAGAGCTATGATCGATCTTCCTATC 479
||||| ||||||||||||||||||||||| || ||| | || |||||||| || || |||
Sbjct 386 CCAGATTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAACTACCCATC 445
Query 480 GCCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTCTGGAGCAAATCTTGGGG-TTTAAG 538
|||||||| ||||| || ||||| | ||||| ||||||| ||||||||||||| |||||
Sbjct 446 GCCGCCGTATCGTTCCAAATCGCCAAAAACAGTCTCTGGTGCAAATCTTGGGGCTTTAA- 504
Query 539 ACCATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAA-AAGAGCTCCTT 597
|||| ||||||||| |||||||||||||||||||||||| || || || |||||||||||
Sbjct 505 ACCACCCGACCCGGGAAAAGCTTTACGGGTCGCGAGAAACGC-CTTAAGAAGAGCTCCTT 563
Query 598 TGATGATACCAATCTTTGATCATTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACC 657
| ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 564 TAATGATCCCCATCTTCGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCGGGTAATC 623
Query 658 CGGTTTT-TTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTTTCTGATTTC 716
||||||| || || |||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 624 CGGTTTTCTTC-ATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTTTCCGAGTTC 682
Query 717 TTCGAGCGTGAGTCTG-TGTTTAGAGGGTCTGACACGTGT-CCGGTTGT-TT-TAACGAA 772
|||||||| || |||| | ||| || | || || | | | || | | || | || ||
Sbjct 683 TTCGAGCGAGAATCTGCT-TTTCGAAGCTCCGA-AT-TCTTCCCGA-GAATTCTCACTAA 738
Query 773 GCAGCGTTCGGTGAGTGAGAAATCAGCCGGGTCGTCGTCGTCTTCTTCATCAAATTTTTC 832
||| ||||| ||||| ||||||||||| || || || ||| || | ||| |
Sbjct 739 GCAACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGA-------AT-A--TTTCCC 788
Query 833 G-AGAATGAGTTTAGATTCGGGTCGGGTTCACGGG-TCGAGTACAC-CGAGATGGGTTGA 889
| |||| | || |||||||||||||| | ||||| | | ||| | |||||||||||||
Sbjct 789 GGAGAA-GC-TT-AGATTCGGGTCGGGCTAACGGGATGG-GTA-AGTCGAGATGGGTTGA 843
Query 890 GTTTTGGAGTGACGCGGCGGTTGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTC 949
|| ||||||||||| ||||| |||||| | || ||||||| || || | || ||||
Sbjct 844 ATTCTGGAGTGACGCTGCGGTGGATCGTTGCCGGCGAAACTCCGCCTCACC-AT--CGTC 900
Query 950 GTCACACT-CTTCATCGCCGGAGAGATATTTAGATTTACCAAGATCCGAGACACCGAAAT 1008
|||| || ||||||||||||| | | |||| | | ||||| |||||||
Sbjct 901 GTCAT-CTTCTTCATCGCCGGACC--T-TC--------CCAAAA-CAGAGACTCCGAAAT 947
Query 1009 GGGTCGACGATTACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAAT 1068
|||| || | ||||| ||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 948 GGGTAAACCAGTACGTAAACCGGATCGGTTCGATATTGAGAGGAGGCGGGTGGAGCGAAT 1007
Query 1069 CCGACGTTGATGATATTGTACACGTGTCAGCATCTGGtttttttGAGGGTGAAATGGTAA 1128
|||| ||||||| || | |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1008 CCGATATTGATGAGATAATCCACGTGTCAGCATCGGGTTTCTTTGAGGGTGAAATGGTAA 1067
Query 1129 TTTTGGATAATCAAGCCGTTCTTGATGCATTGCTTTTG--AAA-GCGGGTCGGTTCTCGG 1185
|| ||||||||||| | |||||||||| | |||||| ||| ||||||||| |||| |
Sbjct 1068 TTATGGATAATCAAACTGTTCTTGATG--T-GCTTTTATTAAAAGCGGGTCGGATCTCTG 1124
Query 1186 AGTCGCTCCGAAAAGCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATT 1245
|||||||||| ||| | || ||||||||||||||||| ||||| || ||||| |||| ||
Sbjct 1125 AGTCGCTCCGTAAATCCGGTTGGAGCTCCGAAGAAGTCTCGGACGCGCTTGGGTTTGGTT 1184
Query 1246 TTCGACCGGAGAAGGAGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAA 1305
|||||||||| ||||||| ||||||||| |||| || || |||| || ||| ||| ||
Sbjct 1185 TTCGACCGGAAAAGGAGAGGAAACCGGTTCAGAAACTCTCGCCTGTGCTCGTCGAAC-AA 1243
Query 1306 T-CGGGAAACTTGCTGAGTCGGTTTCTCGGTCATGA 1340
| || ||||||||||| | |||||| |||||||||
Sbjct 1244 TTCGAAAAACTTGCTGAATGGGTTTCCCGGTCATGA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59154150485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5