BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50350.1 Length=546 Score E Sequences producing significant alignments: (Bits) Value Ahg485386 jgi|Araly1|485386|fgenesh2_kg.5__1378__AT3G50350.1 767 0.0 > Ahg485386 jgi|Araly1|485386|fgenesh2_kg.5__1378__AT3G50350.1 Length=486 Score = 767 bits (415), Expect = 0.0 Identities = 461/484 (95%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 28 ATTGATCGTAAAACCTTTCCACCACCGCACACCCCCTCGCCGGGGGTAGTGCGTCGCATA 87 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATTGATCGTAAAACCTTTCCACCACCGCACACCCCCTCGCCGGGGGTAGTGCGTCGCCTC 60 Query 88 CACGCGCCACCGTTACCTTCTACTTCTCTCTTGAAGCAACACTCGTGGTCTCCTGATCTA 147 |||||||| |||||| |||||||||| ||| |||| ||||||||||||||||| |||||| Sbjct 61 CACGCGCCGCCGTTATCTTCTACTTCACTCCTGAAACAACACTCGTGGTCTCCGGATCTA 120 Query 148 ATCCGCGAGGAAGCTTGGTCAAAACGTCAAGATATCTCCCGCCACCGTCATCTCCGCCGT 207 |||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 121 ATCCGCGAAGAAGCTTGGTCAAAACGTCAAGATACCTCCCGCCACCGTCATCGCCGCCGT 180 Query 208 GGTAAGAGCTTGACCGACGAAGATCTCGACGAGCTTAAAGCAAGTTTCGAACTCGGATTC 267 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGAAAGAGCTTGACGGACGAAGATCTCGACGAGCTTAAAGCAAGTTTCGAACTCGGATTC 240 Query 268 GGTTTCGGATCTCCCGAAAACGCTGATCCAAGACTTTCCAACACGCTTCCCGCGTTAGAA 327 |||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||| Sbjct 241 GGTTTCGGATCTCCTGAAACCGCCGATCCGAGACTTTCCAACACGCTTCCCGCGTTAGAA 300 Query 328 CTTTACTTCGCCGTTCAAAAAAGCTACAACGACGCCGTTTCTAACAAATCAACAACGTCG 387 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 301 CTTTACTTCGCCGTTCAAAAAAGCTACAACGACGCCGTTTCTAACAAGTCAGCAACGTCG 360 Query 388 TCGTCTTCACTCTCCGACGGCGATACCAGTCCTCACCACACCGTATACCAAACCAACGAA 447 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 361 TCGTCTTCACTCTCCGACGGCGATACCAGTCCCCACCACACCGTATACCAAACAAACGAA 420 Query 448 GCTGAAGCAATGGGCGAGAGTGGTGGCGTGCACCGTGAACCAATCGCCGCCGAGATGATA 507 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 421 GCTGAAGCAGTGGGCGAGAGTGGTGGCGTGCACCGTGAACCAATCGCCGCCGAGATGAAA 480 Query 508 ATTT 511 |||| Sbjct 481 ATTT 484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19917217458 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5