BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50350.1

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485386 jgi|Araly1|485386|fgenesh2_kg.5__1378__AT3G50350.1         767    0.0  


> Ahg485386 jgi|Araly1|485386|fgenesh2_kg.5__1378__AT3G50350.1
Length=486

 Score =  767 bits (415),  Expect = 0.0
 Identities = 461/484 (95%), Gaps = 0/484 (0%)
 Strand=Plus/Plus

Query  28   ATTGATCGTAAAACCTTTCCACCACCGCACACCCCCTCGCCGGGGGTAGTGCGTCGCATA  87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  1    ATTGATCGTAAAACCTTTCCACCACCGCACACCCCCTCGCCGGGGGTAGTGCGTCGCCTC  60

Query  88   CACGCGCCACCGTTACCTTCTACTTCTCTCTTGAAGCAACACTCGTGGTCTCCTGATCTA  147
            |||||||| |||||| |||||||||| ||| |||| ||||||||||||||||| ||||||
Sbjct  61   CACGCGCCGCCGTTATCTTCTACTTCACTCCTGAAACAACACTCGTGGTCTCCGGATCTA  120

Query  148  ATCCGCGAGGAAGCTTGGTCAAAACGTCAAGATATCTCCCGCCACCGTCATCTCCGCCGT  207
            |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  121  ATCCGCGAAGAAGCTTGGTCAAAACGTCAAGATACCTCCCGCCACCGTCATCGCCGCCGT  180

Query  208  GGTAAGAGCTTGACCGACGAAGATCTCGACGAGCTTAAAGCAAGTTTCGAACTCGGATTC  267
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGAAAGAGCTTGACGGACGAAGATCTCGACGAGCTTAAAGCAAGTTTCGAACTCGGATTC  240

Query  268  GGTTTCGGATCTCCCGAAAACGCTGATCCAAGACTTTCCAACACGCTTCCCGCGTTAGAA  327
            |||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct  241  GGTTTCGGATCTCCTGAAACCGCCGATCCGAGACTTTCCAACACGCTTCCCGCGTTAGAA  300

Query  328  CTTTACTTCGCCGTTCAAAAAAGCTACAACGACGCCGTTTCTAACAAATCAACAACGTCG  387
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  301  CTTTACTTCGCCGTTCAAAAAAGCTACAACGACGCCGTTTCTAACAAGTCAGCAACGTCG  360

Query  388  TCGTCTTCACTCTCCGACGGCGATACCAGTCCTCACCACACCGTATACCAAACCAACGAA  447
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  361  TCGTCTTCACTCTCCGACGGCGATACCAGTCCCCACCACACCGTATACCAAACAAACGAA  420

Query  448  GCTGAAGCAATGGGCGAGAGTGGTGGCGTGCACCGTGAACCAATCGCCGCCGAGATGATA  507
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  421  GCTGAAGCAGTGGGCGAGAGTGGTGGCGTGCACCGTGAACCAATCGCCGCCGAGATGAAA  480

Query  508  ATTT  511
            ||||
Sbjct  481  ATTT  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19917217458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5