BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50360.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897921 jgi|Araly1|897921|Al_scaffold_0005_1887 843 0.0
> Ahg897921 jgi|Araly1|897921|Al_scaffold_0005_1887
Length=510
Score = 843 bits (456), Expect = 0.0
Identities = 493/511 (96%), Gaps = 2/511 (0%)
Strand=Plus/Plus
Query 85 ATGTCGAGTAT-ATACAGAACTGTTTCGAGAAAAGAGAAACCGAGACGTCATCATGGATT 143
||||| ||| | | ||||| ||| ||||| ||||||||||||||||||| |||||| ||
Sbjct 1 ATGTCAAGTTTCA-ACAGAGGTGTATCGAGGAAAGAGAAACCGAGACGTCCTCATGGGTT 59
Query 144 GACGACACAGAAGAAGCAAGAGATTAAGGAAGCTTTTGAGCTATTTGACACTGATGGTTC 203
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 GACGACGCAGAAGAAGCAAGAGATTAAGGAAGCTTTTGAGCTATTTGACACTGATGGATC 119
Query 204 TGGTACCATTGATGCTAAAGAGCTTAATGTTGCTATGAGGGCGCTTGGTTTTGAAATGAC 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGTACCATTGATGCTAAAGAGCTTAATGTTGCTATGAGGGCGCTTGGTTTTGAAATGAC 179
Query 264 GGAAGAGCAAATCAACAAAATGATAGCTGATGTGGATAAAGATGGAAGTGGAGCTATAGA 323
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 180 GGAAGAGCAAATCAACAAAATGATAGCTGATGTGGACAAAGATGGAAGTGGAGCGATAGA 239
Query 324 TTTTGATGAGTTTGTTCATATGATGACTGCTAAGATTGGTGAAAGAGACACAAAAGAAGA 383
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTTGATGAGTTTGTTTATATGATGACTGCTAAGATTGGTGAAAGAGACACAAAAGAAGA 299
Query 384 GCTCACTAAAGCATTCCAGATCATTGATCTTGACAAAAATGGGAAGATATCTCCGGATGA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTCACTAAAGCATTCCAGATCATTGATCTTGACAAAAATGGGAAGATATCTCCGGATGA 359
Query 444 TATCAAACGCATGGCAAAGGACTTGGGTGAGAATTTCACTGATGCTGAGATACGAGAGAT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 TATCAAACGCATGGCAAAGGACTTGGGTGAGAATTTCACTGATGCTGAGATACTAGAGAT 419
Query 504 GGTTGAAGAAGCAGACCGAGACCGTGATGGTGAAGTTAACATGGATGAATTCATGAGGAT 563
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTTGAAGAAGCAGACCGGGACCGTGATGGTGAAGTTAACATGGATGAATTCATGAGGAT 479
Query 564 GATGAGGAGAACTGCTTATGGTGGTAACTAG 594
|||||||||||| ||||||||||||||||||
Sbjct 480 GATGAGGAGAACAGCTTATGGTGGTAACTAG 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5