BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50360.1 Length=804 Score E Sequences producing significant alignments: (Bits) Value Ahg897921 jgi|Araly1|897921|Al_scaffold_0005_1887 843 0.0 > Ahg897921 jgi|Araly1|897921|Al_scaffold_0005_1887 Length=510 Score = 843 bits (456), Expect = 0.0 Identities = 493/511 (96%), Gaps = 2/511 (0%) Strand=Plus/Plus Query 85 ATGTCGAGTAT-ATACAGAACTGTTTCGAGAAAAGAGAAACCGAGACGTCATCATGGATT 143 ||||| ||| | | ||||| ||| ||||| ||||||||||||||||||| |||||| || Sbjct 1 ATGTCAAGTTTCA-ACAGAGGTGTATCGAGGAAAGAGAAACCGAGACGTCCTCATGGGTT 59 Query 144 GACGACACAGAAGAAGCAAGAGATTAAGGAAGCTTTTGAGCTATTTGACACTGATGGTTC 203 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 GACGACGCAGAAGAAGCAAGAGATTAAGGAAGCTTTTGAGCTATTTGACACTGATGGATC 119 Query 204 TGGTACCATTGATGCTAAAGAGCTTAATGTTGCTATGAGGGCGCTTGGTTTTGAAATGAC 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGGTACCATTGATGCTAAAGAGCTTAATGTTGCTATGAGGGCGCTTGGTTTTGAAATGAC 179 Query 264 GGAAGAGCAAATCAACAAAATGATAGCTGATGTGGATAAAGATGGAAGTGGAGCTATAGA 323 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 180 GGAAGAGCAAATCAACAAAATGATAGCTGATGTGGACAAAGATGGAAGTGGAGCGATAGA 239 Query 324 TTTTGATGAGTTTGTTCATATGATGACTGCTAAGATTGGTGAAAGAGACACAAAAGAAGA 383 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTTTGATGAGTTTGTTTATATGATGACTGCTAAGATTGGTGAAAGAGACACAAAAGAAGA 299 Query 384 GCTCACTAAAGCATTCCAGATCATTGATCTTGACAAAAATGGGAAGATATCTCCGGATGA 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GCTCACTAAAGCATTCCAGATCATTGATCTTGACAAAAATGGGAAGATATCTCCGGATGA 359 Query 444 TATCAAACGCATGGCAAAGGACTTGGGTGAGAATTTCACTGATGCTGAGATACGAGAGAT 503 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 360 TATCAAACGCATGGCAAAGGACTTGGGTGAGAATTTCACTGATGCTGAGATACTAGAGAT 419 Query 504 GGTTGAAGAAGCAGACCGAGACCGTGATGGTGAAGTTAACATGGATGAATTCATGAGGAT 563 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGTTGAAGAAGCAGACCGGGACCGTGATGGTGAAGTTAACATGGATGAATTCATGAGGAT 479 Query 564 GATGAGGAGAACTGCTTATGGTGGTAACTAG 594 |||||||||||| |||||||||||||||||| Sbjct 480 GATGAGGAGAACAGCTTATGGTGGTAACTAG 510 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29697752343 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5