BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50400.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348149 jgi|Araly1|348149|fgenesh1_pg.C_scaffold_5001541 1773 0.0
> Ahg348149 jgi|Araly1|348149|fgenesh1_pg.C_scaffold_5001541
Length=1125
Score = 1773 bits (960), Expect = 0.0
Identities = 1072/1127 (95%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 33 ATGAAGAAATCTATTTTCTTTGTCCCAGTT-TTGGTATTATTCTTCTTTGGATCAAGATT 91
||||| ||| ||| || |||||||||| || || ||||| || ||| |||||||||||||
Sbjct 1 ATGAATAAAGCTAATTACTTTGTCCCA-TTCTTCGTATTCTTGTTCATTGGATCAAGATT 59
Query 92 TTCTAGAGTAGCTAGCGCAGGAGACCAAAGA-GCCTTAGCCGCTTCATTCGTCTTCGGCG 150
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 60 TTCTATAGTAGCTAGCGCAGGAGACCAAA-ACGCCTTAGCCGCTTCATTCGTCTTTGGCG 118
Query 151 ATTCGCTAGTAGACGCAGGAAATAACAACTACTTACAAACGTTGTCTAGAGCCAACAGTC 210
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 119 ATTCGCTAGTGGACGCAGGAAATAACAACTACTTACAAACATTGTCTAGAGCCAATAGTC 178
Query 211 CTCCTAATGGCATCGATTTCAAACCATCTCGTGGAAATCCAACCGGCCGGTTTACTAATG 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 CTCCTAATGGCATCGATTTCAAACCATCTCGTGGAAATCCAACCGGCCGGTTTACGAATG 238
Query 271 GCCGTACCATAGCTGACATCGTTGGAGAAAAGTTAGGGCAGCAAAGTTATGCAGTTCCAT 330
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 GCCGTACCATAGCTGACATCGTTGGAGAAAAGTTAGGGCAGCCAAGTTATGCAGTTCCAT 298
Query 331 ATTTAGCACCAAATGCAAGTGGTGAAGCACTATTAAATGGTGTGAACTATGCATCAGGTG 390
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 299 ATTTAGCACCAAATGCAAGTGGTGAAGCACTATTAAATGGCGTGAACTACGCATCAGGTG 358
Query 391 GTGGTGGAATTCTCAATGCTACAGGAAGTGTATTTGTGAATCGGTTAGGAATGGACATAC 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGGTGGAATTCTCAATGCTACAGGAAGTGTATTTGTGAATCGGTTAGGAATGGACATAC 418
Query 451 AAGTTGATTACTTTACCAATACAAGGAAGCAGTTTGATAAGCTTTTGGGTCAAGATAAAG 510
|||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||| |
Sbjct 419 AAGTTGATTACTTTACTATTACAAGGAAGCAATTTGATAAGCTTTTGGGTGAAGATAAGG 478
Query 511 CTAGAGATTACATTAGAAAGAGATCCTTATTTTCTGTAGTTATCGGTTCAAACGATTTTC 570
||||||||||||||||||||| ||||||||| ||| |||| || ||||||||||||||||
Sbjct 479 CTAGAGATTACATTAGAAAGAAATCCTTATTCTCTATAGTCATTGGTTCAAACGATTTTC 538
Query 571 TCAACAATTACCTAGTCCCTTTTGTCGCGGCTCAAGCAAGACTAACACAAACTCCTGAAA 630
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 TCAACAACTATCTAGTCCCTTTTGTCGCGGCTCAAGCAAGGCTAACACAAACTCCTGAAA 598
Query 631 CTTTCGTCGATGACATGATTAGCCACCTCCGCAACCAGCTCAAGAGATTATATGATATGG 690
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTTTGTTGATGACATGATTAGCCACCTCCGCAACCAGCTCAAGAGATTATATGATATGG 658
Query 691 ACGCTCGGAAATTTGTGGTGGGAAATGTGGCTCCTATTGGATGTATACCATACCAGAAAT 750
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 659 ATGCTCGGAAATTTGTGGTGGGAAATGTGGCTCCGATCGGATGTATACCATACCAGAAAT 718
Query 751 CGATCAATCAATTGAACGATAAACAGTGTGTTGATTTAGCAAACAAACTGGCTATTCAAT 810
||||||||||| | |||||||| |||||||||||||| ||||||||||||||| |||| |
Sbjct 719 CGATCAATCAACTAAACGATAAGCAGTGTGTTGATTTGGCAAACAAACTGGCTCTTCAGT 778
Query 811 ACAATGCTCGTCTCAAAGATCTCTTGACGGTGGAATTGAAAGATAGTCTCAAAGACGCAC 870
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 779 ACAATGCTCGTCTCAAAGATCTCTTGATGGTGGAATTGAAAGACAGTCTCAAAGACGCAC 838
Query 871 ACTTCGTTTATGCCAACGTTTATGATTTATTCATGGACCTCATTGTCAACTTCAAAGACT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACTTCGTTTATGCCAACGTTTATGATTTATTCATGGACCTCATTGTCAACTTCAAAGACT 898
Query 931 ACGGGTTTAGGACGGCAAGTGAGGCGTGTTGCGAAACGAGAGGGAGATTGGCGGGGATAT 990
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 899 ACGGGTTTAGGACGGCGAGTGAGGCGTGTTGTGAGACGAGAGGGAGATTGGCGGGGATAT 958
Query 991 TGCCATGTGGACCAACGTCGAGCCTTTGTACGGACCGGTCAAAGCATGTGTTCTGGGACG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGCCATGTGGACCAACGTCGAGCCTTTGTACGGACCGGTCAAAGCATGTGTTCTGGGACG 1018
Query 1051 CGTACCATCCTACCGAAGCCGCTAATCTTCTTATTGCTGACAAATTACTTTACGGAGACT 1110
|||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1019 CGTACCATCCTAGCGAAGCCGCTAATCTTCTCATTGCTGACAAATTACTCTACGGTGACT 1078
Query 1111 CCAAATTCGTCACTCCCTTTAACCTCCTCCACCTTCGTGACCTTTGA 1157
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CCAAATTCGTCACTCCCTTTAACCTCCTCCACCTTCGTGACCTTTGA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5