BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50420.1
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348150 jgi|Araly1|348150|fgenesh1_pg.C_scaffold_5001542 2806 0.0
Ahg937882 jgi|Araly1|937882|scaffold_502073.1 462 4e-129
> Ahg348150 jgi|Araly1|348150|fgenesh1_pg.C_scaffold_5001542
Length=2295
Score = 2806 bits (1519), Expect = 0.0
Identities = 1897/2083 (91%), Gaps = 12/2083 (1%)
Strand=Plus/Plus
Query 262 ATGCCACTGAACGAAATAGCTTCTTCCGTTGTAGAACTTACACGGAAATGCGTCTCGATC 321
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1 ATGCCACTGAACGAAATAGCTTCGTCTGTAGTAGAACTTACACGGAAATGCGTCTCGATC 60
Query 322 ACGGTACTAAAACGGGCGCGTCAGATCCACGCTCTCGTCCTCACCGCCGGCGCTGGCGCC 381
|||| ||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||
Sbjct 61 ACGGCACTAAAACGGGCGTGTCAGCTCCACGCTATCATCCTCACCGCCGGCGCTGGCTCC 120
Query 382 GCTACCGAGTCTCCGTACGCAAATAACAATCTCATCTCAATGTATGTGAGGTGTGGTTCA 441
||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTCCGAATCTCCGTACAAAAATAACAATCTCATCTCAATGTATGTGAGGTGTGGTTCA 180
Query 442 CTGGAACAAGCACGGAAAGTGTTCGACAAAATGCCTCACAGAAACGTAGTTTCTTATAAT 501
|| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |||
Sbjct 181 CTTGAACAAGCACGGAAACTGTTCGACAAAATGCCTGAGAGAAACGTAGTTTCTTACAAT 240
Query 502 GCGCTTTATTCGGCGTATTCCCGGAACCCAGATTTTGCAAGTTATGCGTTTCCTCTAACA 561
|| || |||||||||||||||||||||| ||||| ||||||||||||||| ||| | |
Sbjct 241 GCACTCTATTCGGCGTATTCCCGGAACCTAGATTACGCAAGTTATGCGTTTAGTCTGATA 300
Query 562 ACCCATATGGCGTTTGAGTACGTGAAGCCCAATAGTTCAACTTTCACTAGCTTAGTGCAA 621
| || ||||| | ||| | | |||||||||||||||| |||||||||||||||||||||
Sbjct 301 AATCAAATGGCATCTGAATCCTTGAAGCCCAATAGTTCGACTTTCACTAGCTTAGTGCAA 360
Query 622 GTATGTGCTGTGCTTGAGGATGTTTTAATGGGGTCATCATTAAACTCGCAGATTATAAAG 681
|||||| ||||||||||||||||||| |||||||||| | || | |||||||||||||||
Sbjct 361 GTATGTACTGTGCTTGAGGATGTTTTGATGGGGTCATTACTACATTCGCAGATTATAAAG 420
Query 682 CTTGGTTATTCAGATAATGTAGTTGTCCAGACATCGGTTTTGGGGATGTACTCTAGTTGC 741
||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CTTGGATATTCAGATAATGTGGTTGTCCAGACATCGGTTTTGGGGATGTACTCCAGTTGC 480
Query 742 GGGGACTTAGAATCTGCGAGGAGAATATTTGACTGTGTAAATAATAGAGATGCGGTTGCT 801
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 481 GGGGACTTAGAATCTGCGAGGAGAATCTTTGAGTGTGTAAATGGCGGAGATGCGGTTGCT 540
Query 802 TGGAACACAATGATAGTTGGGAGTTTGAAAAATGATAAGATAGAAGATGGGCTTATGTTC 861
|||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||
Sbjct 541 TGGAACACAATGATAGTTGGGATTTTTAGAAATGATAAGATAGAAGATGGGCTTATGCTC 600
Query 862 TTTCGAAACATGTTGATGTCTGGTGTTGATCCAACGCAGTTCACGTATTCGATTGTGTTG 921
||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 601 TTTAGAAGCATGTTGATGTCTGGTGTTGATCCTTCGCAGTTCACGTATTCGATGGTGCTG 660
Query 922 AATGGTTGTAGTAAATTGGGAAGCTAT---TCA--CTG--GGGAAACTAATCCATGCCCG 974
|||| |||||||||| ||||||||||| | | ||| || ||| |||||||||||||
Sbjct 661 AATGCTTGTAGTAAACTGGGAAGCTATAGAT-ATTCTGTAGGAAAATTAATCCATGCCCG 719
Query 975 GATAATAGTCTCTGATAGTTTAGCTGATTTACCTCTAGATAATGCTCTTCTTGACATGTA 1034
||| |||||||| |||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct 720 GATGATAGTCTCAGATATTTTAGCTGATTTACCTGTAGAAAATGCTCTTCTTGACATGTA 779
Query 1035 TTGCAGTTGTGGAGACATGAGGGAAGCATTTTATGTGTTTGGGAGGATTCATAACCCAAA 1094
|||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 780 TTGCAGTTGTGGGGACATGAAAGAAGCATTTTATGTGTTTGGGAAGATACATAACCCAAA 839
Query 1095 TTTGGTTTCATGGAACTCGATTATTTCAGGGTGCTCAGAAAACGGCTTTGGAGAGCAAGC 1154
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 TTTGGTTTCATGGAACTCGATTATTTCGGGGTGCTCAGAAAACGGCTTTGGAGAGCAAGT 899
Query 1155 GATGCTTATGTATAGAAGGTTGCTGAGGATGTCCACACCTCGGCCGGATGAATATACTTT 1214
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 900 GATTCTTATGTATAGAAGGTTGCTGAGGATATCCACACCTCGACCGGATGAATATACTTT 959
Query 1215 CTCTGCTGCTATATCTGCGACAGCGGAACCAGAAAGATTTGTTCATGGGAAGCTTCTTCA 1274
||||||||||||| |||||||||| |||||||||| |||| |||||||||||||||||||
Sbjct 960 CTCTGCTGCTATACCTGCGACAGCTGAACCAGAAAAATTTATTCATGGGAAGCTTCTTCA 1019
Query 1275 CGGACAAGTAACGAAATTAGGATATGAAAGGAGTGTTTTTGTTGGAACAACACTATTGTC 1334
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1020 CGGACAAGTAACAAAATTAGGATATGAAAGGAGTGTGTTTGTTGGAACAACACTCTTGTC 1079
Query 1335 GATGTACTTCAAGAACAGGGAAGCTGAATCTGCACAGAAGGTGTTTGATGTGATGAAGGA 1394
||||||||||| ||| |||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 1080 CATGTACTTCAAAAACGGGGAAGCTGAATCTGCACAGAAGGCGTTTGGTGTGATCACTGA 1139
Query 1395 AAGGGATGTTGTTCTCTGGACTGAGATGATCGTAGGGCATTCTAGATTAGGAAACAGCGA 1454
|||||||||||||||||||||||||||||| || ||| | |||||| | |||||||| |
Sbjct 1140 AAGGGATGTTGTTCTCTGGACTGAGATGATTGTTGGGGAATCTAGAGTGGGAAACAGTG- 1198
Query 1455 ATTA-GCGGTCCAATTCTTCATTGAAATGTACAGAGAAAAGAATAGAAGTGATGGTTTTT 1513
| || || |||||| |||| |||||||||||| ||||||| ||||||| |||||||||||
Sbjct 1199 AGTATGCAGTCCAACTCTTTATTGAAATGTACCGAGAAAAAAATAGAACTGATGGTTTTT 1258
Query 1514 CCCTGAGTAGTGTCATAGGAGCATGTTCAGATATGGCAATGCTAAGACAAGGTGAAGTTT 1573
||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||| |
Sbjct 1259 CCCTGAGTAGTGTTTTAGGTGCATGTTCAGATATGGCGATGCTAAGACAAGGTCAAGTGT 1318
Query 1574 TCCATTGTCTTGCCA-TAAGGACGGGATTCGATTGTGTTATGTCAGTATGTGGAGCGCTA 1632
|||||| |||||||| ||| |||||| ||||| |||||||||||||| ||||| |||
Sbjct 1319 TCCATTCTCTTGCCATTAA-GACGGGGTTCGACAATGTTATGTCAGTATCCGGAGCACTA 1377
Query 1633 GTAGACATGTATGGGAAAAACGGTAAATACGAAACTGCAGAAACAATATTCTCTCTTGCT 1692
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 1378 GTAGACATGTATGGGAAAAACGGCAAATACGAAACTGCAGAATCAATATTCTCTCTTGTT 1437
Query 1693 TCAAATCCAGATTTGAAATGTTGGAATTCGATGCTAGGTGCTTATAGTCAGCATGGAATG 1752
|||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct 1438 TCAAATCCAGATTTGAAATGCTGGAACTCAATGCTAGGAGCTTATAGTCAGCATGGAATG 1497
Query 1753 GTAGAAAAAGCTCTGAGCTTCTTCGAGCAAATACTAGAAAACGGATTCATGCCAGATGCT 1812
|||||||| |||||||| |||||||| |||||||||||||||||||||| || ||||||
Sbjct 1498 GTAGAAAAGGCTCTGAGTTTCTTCGAACAAATACTAGAAAACGGATTCACCCCGGATGCT 1557
Query 1813 GTTACATACTTGTCTTTATTAGCAGCCTGTAGCCACAGGGGATCAACGTTGCAAGGTAAG 1872
|| |||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct 1558 GTAACATACTTGTCTTTATTAGCAGCCTGCAGCCACAGGGGATCAACGCAGGAAGGTGAG 1617
Query 1873 TTCCTATGGAACCAAATGAAGGAACAGGGCATCAAAGCAGGGTTTAAGCACTACTCTTGC 1932
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1618 TTCCTGTGGAATCAAATGAAGGAACAGGGCATCAAAGCAGGGTTTAAACACTACTCTTGC 1677
Query 1933 ATGGTGAATTTAGTATCAAAAGCTGGGTTAGTAGACGAGGCACTGGAACTGATAGAACAA 1992
||||||| ||| ||||| |||||||||||| ||| ||| ||||||||||||||| |||||
Sbjct 1678 ATGGTGAGTTTGGTATCCAAAGCTGGGTTATTAGGCGAAGCACTGGAACTGATAAAACAA 1737
Query 1993 TCTCCTCCCGGGAACAACCAAGCAGAGCTCTGGAGAACTCTGCTAAGCGCATGTGTTAAC 2052
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1738 TCTCCTCCCGGGAACAACCAAGCAGAGCTCTGGAGAACTCTGCTAAGCGCCTGTGTTAAC 1797
Query 2053 ACAAGAAACTTGCAGATAGGACTATATGCAGCTGAGCAAATACTGAAACTTGATCCAGAA 2112
|||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct 1798 GCAAGAAACTTGCAGATTGGACTATATGCAGCTGATCAGATCCTGAAACTTGATCCAGAA 1857
Query 2113 GACACTGCAACACACATTCTACTATCAAATTTATATGCAGTAAATGGGAGATGGGAGGAT 2172
|||||||||||||||||||||||||| ||| | ||||| || |||||||||||| |||||
Sbjct 1858 GACACTGCAACACACATTCTACTATCTAATCTGTATGCGGTGAATGGGAGATGGAAGGAT 1917
Query 2173 GTTGCAGAGATGAGAAGGAAGATTAGAGGATTAGCTTCATCTAAAGATCCAGGATTGAGC 2232
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1918 GTTGCAGAGATGAGAAGGAAGATTAGAGGATTAGCTTCAGCTAAAGATCCCGGATTGAGC 1977
Query 2233 TGGATTGAAGTGAACAACAACAATACACAAGTTTTCTCCTCAGGAGACCAGTCGAACCCA 2292
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1978 TGGATTGAAGTGAACAACAACAATACACACGTTTTCTCCTCTGGAGACCAGTCTAACCCA 2037
Query 2293 GAAGTTGTAAGTCAAGCTCAAGATGAATTAAATAGATTAAAGA 2335
||| || ||| ||||||||| ||||||||| ||||||||||||
Sbjct 2038 GAAATTATAACTCAAGCTCACGATGAATTACATAGATTAAAGA 2080
> Ahg937882 jgi|Araly1|937882|scaffold_502073.1
Length=616
Score = 462 bits (250), Expect = 4e-129
Identities = 303/329 (92%), Gaps = 2/329 (1%)
Strand=Plus/Plus
Query 584 TGAAGCCCAATAGTTCAACTTTCACTAGCTTAGTGCAAGTATGTGCTGTGCTTGAGGATG 643
||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 280 TGAAGCCCAATAGCTCGACTTTCACTAGCTTAGTGCAAGTATGTACTGTGCTTGAGGATG 339
Query 644 TTTTAATGGGGTCATCATTAAACTCGCAGATTATAAAGCTTGG-TTATTCAGATAATGTA 702
|||| |||||||||| | || | ||||| | |||||||||||| || ||||| ||||||
Sbjct 340 TTTTGATGGGGTCATTACTACATTCGCATACTATAAAGCTTGGATT-TTCAGGTAATGTG 398
Query 703 GTTGTCCAGACATCGGTTTTGGGGATGTACTCTAGTTGCGGGGACTTAGAATCTGCGAGG 762
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 399 GTTGTCCAGACATCGGTTTTGGGGATGTACTCCAGTTGCGGGGACTTAGAATCTGCGAGG 458
Query 763 AGAATATTTGACTGTGTAAATAATAGAGATGCGGTTGCTTGGAACACAATGATAGTTGGG 822
||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 459 AGAATCTTTGACTGTGTAAATGACGGAGATGCGGTTGCTTGGAACGCAATGATAGTTGGG 518
Query 823 AGTTTGAAAAATGATAAGATAGAAGATGGGCTTATGTTCTTTCGAAACATGTTGATGTCT 882
||||||| ||||||||||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct 519 AGTTTGAGAAATGATAAGATAGAAGATGGGCTTGTGCTCTTTAGAAGCATGTTGATGTCT 578
Query 883 GGTGTTGATCCAACGCAGTTCACGTATTC 911
||||||||||||||| |||||||||||||
Sbjct 579 GGTGTTGATCCAACGTAGTTCACGTATTC 607
Score = 342 bits (185), Expect = 6e-93
Identities = 235/259 (91%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 255 CTTTTTTATGCCACTGAACGAAATAGCTTCTTCCGTTGTAGAACTTACACGGAAATGCGT 314
||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 14 CTTTTTTATGCCACTTAACGAAGTAGCTTCTTCCGCTGTACAACTTACACGGAAATGCGT 73
Query 315 CTCGATCACGGTACTAAAACGGGCGCGTCAGATCCACGCTCTCGTCCTCACCGCCGGCGC 374
|||||| || ||||||| |||||||||| |||||||| || ||||||| ||||||||
Sbjct 74 CTCGAT---GGCGCTAAAACAGGCGCGTCAGCTCCACGCTATCATCCTCACTGCCGGCGC 130
Query 375 TGGCGCCGCTACCGAGTCTCCGTACGCAAATAACAATCTCATCTCAATGTATGTGAGGTG 434
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TGGCTCCGCTTCCGAGTCTCCGTACGCAAATAACAATCTCATCTCAATGTATGTGAGGTG 190
Query 435 TGGTTCACTGGAACAAGCACGGAAAGTGTTCGACAAAATGCCTCACAGAAACGTAGTTTC 494
||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||||||||
Sbjct 191 TGGTTCACTTGAACAAGCACGGAAACTGTTCAACAAAATGCCTGAGAGAAACGTAGTTTC 250
Query 495 TTATAATGCGCTTTATTCG 513
||| ||||| || ||||||
Sbjct 251 TTACAATGCACTCTATTCG 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89854887955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5