BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50430.1
Length=2329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485395 jgi|Araly1|485395|fgenesh2_kg.5__1387__AT3G50430.1 3291 0.0
> Ahg485395 jgi|Araly1|485395|fgenesh2_kg.5__1387__AT3G50430.1
Length=2340
Score = 3291 bits (1782), Expect = 0.0
Identities = 2175/2359 (92%), Gaps = 49/2359 (2%)
Strand=Plus/Plus
Query 1 GTGAACTGTCGTCGTTGTAAAATGGCTACCGGAAACTTGGCTTCTCGTCTTCATCTCTTG 60
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GTGAACAGTCGTCGTTGTAAAATGGCTACCGGAAACTTAGCTTCTCGTCTTCATCTCTTG 60
Query 61 ATCGATCTTTGTGTTCGCCAATTCCCTGAAAGAGAAGAAGTAACTTTGCCGACGAAGGAA 120
||||||| ||||||||||||| |||||||||||||| | ||| | |||||||||||||
Sbjct 61 ATCGATCGCTGTGTTCGCCAATACCCTGAAAGAGAAGCA--AAC-TCGCCGACGAAGGAA 117
Query 121 ACGGAAAAAGATCTGCTTCTTTCTCTATCTCAGG-TGTTGAGAG-AAATTCAAT-CTTGG 177
||||| |||||||||||||||||||||||||||| | | | | || || | |||
Sbjct 118 ACGGAGAAAGATCTGCTTCTTTCTCTATCTCAGGTTCATCATTGTCGATGCATTGTTTGC 177
Query 178 AGGAGCGAAATTTCATGTGATAAG-GCGGTGGAATC-GCGAGAGGAGACTGTTGTTGATC 235
|| || || ||| | || | | |||| | |||||||||||||||||||||
Sbjct 178 TTCCTCG-AAGCTCCGGTGTTGAGAGAAATTCAATCTG-GAGAGGAGACTGTTGTTGATC 235
Query 236 ATGATGA-ATCTGCTGATGCTTTATATGGTCCAGACTCTATAGAGTATTTATGCTTAGAA 294
||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 236 ATGATGAGA-CTGCTGATGCTTTATATGGTCCAGAATCTAAAGAGTATTTATGCTTAGAA 294
Query 295 AGACTTGTGGCGGATCTTGTTTGTTTGTTGGGTATGGAGAATGTGCATGTTAAACATTTG 354
||||||||||| ||||||||| |||||||||||||| | ||||||||| |||||||||||
Sbjct 295 AGACTTGTGGCTGATCTTGTTGGTTTGTTGGGTATGAAAAATGTGCATATTAAACATTTG 354
Query 355 GCTGGCAACATACTTGTGGAAGTATCCG-GTTGTCTTGTTGAATCTGGAAGTCAATGGGA 413
||||||||||| |||||||||||||||| | | || ||| |||||||||||||||||||
Sbjct 355 GCTGGCAACATTCTTGTGGAAGTATCCGAG-TCCCTGGTTCAATCTGGAAGTCAATGGGA 413
Query 414 TGAGTTCATTCGTTTGCTTTGTGAATGTTTGCGGTTAGCAGTTATCTACAGTTTCCCAAT 473
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 414 TGAGTTCATTCGTTTGCTTTGTGAATGTTTGCGCTTAGCAGTTATCTACAGTTGCCCAAT 473
Query 474 TCCTGCTGTAGGATCTGAAACTGGATTTGGAAGTCTAGATCAATGTTTCTTCGGTTCTGA 533
||||||||| | ||||||||||||||||||| || |||| | ||||||| ||||||||
Sbjct 474 TCCTGCTGTTGCTTCTGAAACTGGATTTGGAATTCCGGATCTACGTTTCTTAGGTTCTGA 533
Query 534 TGTTCTTAAATGTAAGCTGGAAAAGGCTAACTGGTCCACGGTGTCGGATATCTTTCGAGT 593
||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
Sbjct 534 TGTTCTTAAATGTAAGCTGGAAAAGGCTAACTGGTCCACCGTGTCTGATCTCTTTCGAAT 593
Query 594 TCTTCGTAATATATTGAAGCGCTTGAGCCAAGAAGACA-ATGAGGAAATTTTTGATGTAT 652
|||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||
Sbjct 594 TCTTCGTAATATATTGAAGCGCTTGAGCCAAGAAGA-AGATGAGGAACTTCTTGATGTAT 652
Query 653 ACTTGGAATCTGTCAACTCTACACTTGCAAAAGTTCCTTGGTGCCGATTGGATACTATTT 712
|||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| | |
Sbjct 653 ACTTGGAATCTGTCAACTCTACACTTGCAAAAGTTCCTTGGTCCCGAGTGGACACTGTGT 712
Query 713 TTTCTCATCAGCATGGTAGTGGTGAAAGAAATTTCCAAGGTCAGA---G-----T-GGAA 763
| ||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 713 TCTCTCATCAGCATGGTAGTGGTGAAAGAAATTTCCAAGGTCAGAGTGGAACTCTCGGAA 772
Query 764 --A---C--A--GTGAGGAAGCAACTGTATTTCTTGGGAGCTTTGTCCAGTTTCTCTGTT 814
| | | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 GCACTGCAAACTGTGAGGAAGCAACTGTATTTCTTGGGAACTTTGTCCAGTTTCTCTGTT 832
Query 815 CCATGGTTCAGCAGGTTCATGTTGTAGAAGATTCTGATGATTTTGAACCTTCATATTTGA 874
||||||||||||| |||| ||||||||||||||||||||||| |||||||||| ||||||
Sbjct 833 CCATGGTTCAGCATGTTCGTGTTGTAGAAGATTCTGATGATTCTGAACCTTCACATTTGA 892
Query 875 TCCTCCAAAAAACCATCAAGCTTATTCCGGATCTCCTCCGTTGGTGCCAACCAAAGTTGA 934
||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
Sbjct 893 TCCTCCAAAAAACCATCAAGCTTGTTCCGGATCTCATCCGATGGTGCCAACCAAAGTTAA 952
Query 935 AAAGTCAAAGTGGCTCTTGCATGTCAAGATACCTAGGGCACAAGTTACTGGTGTTGATGA 994
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 953 AAAGTCAAAGTGGCTCTTGCATGTCAAGATACCTAGGTCACAAGTTACTGGTGTTGATGA 1012
Query 995 TCAGGCTTACTGATAAGTCCAAAATCAAATGTACCATTCTTCTTTCATGGCTGCAATATT 1054
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1013 TCAGGCTTACTGATAAGTCCAATATAAAATGTACCATTCTTCTTTCATGGCTGCAATATT 1072
Query 1055 TGCAACGGGATTCTCAAGGCTTTCTTCAACACACCCTAACAAAGTTTAAACCCGTTCAAG 1114
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TGCAACGAGATTCTCAAGGCTTTCTTCAACACACCCTAACAAAGTTTAAACCCGTTCAAG 1132
Query 1115 ATAATTGTTTGGAGGGTTCGCCATTCTTTGTGAGTTTGTCTGATAGGGAGGTCAATGAGA 1174
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1133 ATAATTGTTTGGAGGGTTCGCCATTTTTTGTGAGTTTGTCTGATAGGGAGATCAATGAGA 1192
Query 1175 TGCATTCTAATCATTTGCAAAGACTCTCTGTGTTTCTGTTCCTACGGTGCTCCTTCACTT 1234
||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||
Sbjct 1193 CCCATTCTAATCATTTGCAAAGACTTTCTGTGTTCCTATTCTTACGGTGCTCCTTCACTT 1252
Query 1235 TGATTTACTCAAGTAGACATAACGACAAGCTA-TGTGAGTTTGATTGTAGAAAGAAAGGG 1293
||||||| |||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1253 TGATTTATTCAAGTAGACATAACGGCAAGC-AGTGTGAGTTTGATTGTAGAAAGAAAGGG 1311
Query 1294 ATGGCAGAGATGTTTAAATGGATTGAACGACAGATTCCAGGCAATATGTTTTCTGATCAC 1353
||| ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||
Sbjct 1312 ATGACAGAGATGTTTAAATGGATTGTACGACAGATTCCAGGCATTATATGTTCTGATCAC 1371
Query 1354 AGAATTTATAGCAAGAAGAATGTTGAATTTTCTGCATCCTTCGTTCGGCTGTTCATGCAT 1413
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1372 AGAATTTATAGCAAGAAGAGTGTTGAATTTTCTGCATCCTTCGTCCGGCTGTTCATGCAT 1431
Query 1414 GAGGATGATCTATTATTTAAAGTCCTCCTGCAATTGCTGTCTGTACCATTGCATAGACAG 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAGGATGATCTATTATTTAAAGTCCTCCTGCAATTGCTGTCTGTACCATTGCATAGACAG 1491
Query 1474 GAATTGCCTAACGTGGAAGGGGGTTCGCTTGAAGATGAGGAACAAATTACTCTCTTCCGT 1533
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1492 GAACTGCCTAACGTGGAAGGGGGTTCGCTAGAAGATGAGGAACAAATTACTCTCTTCCGT 1551
Query 1534 TTATCAACCTTGTTCAATCCTGTAAGATTATTCTGTATATTTCTTTCAGAGCTGCATTAT 1593
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1552 TTCTCAACCTTGTTCAATCCTGTAACCCTATTCTGTATATTTCTTTCAGAGCTGCATTAT 1611
Query 1594 GATCATCAAGTACTTCTTGATTACCTTATATCTAAAGATATTGGGGCTAGCTGCGCAGAG 1653
|||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||
Sbjct 1612 GATCATCAAGTACTTCTTGATTACCTTATATCAAAAGATATCGGGGATAGCTGTGCAGAG 1671
Query 1654 TACCTGCTGAGATGCTTGCGTGCAGTATGTGATTCATGGACTCTATTTGTGGAATTCCCA 1713
||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 1672 TACCTCCTGAGATGCTTGCGCGCAGTCTGTGATTCATGGGCTCTATTTGTGGAATTCCCA 1731
Query 1714 TTTGAAGGAAGTACAGATGCTCCATCTCCGAAGAGAAGAAAAGTTTTGCCTGAGACTTCT 1773
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TTTGAAGGAAGTACAAATGCTTCATCTCCGAAGAGAAGAAAAGTTTTGCCTGAGACTTCT 1791
Query 1774 GAGGTTGAACAAAACTGGAGATTACATGCCCAGGCTTTTGAAGACGCCAAAGATTGTCTG 1833
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1792 GAGGTTGAACAAAACTGGAGATTACATCCCCAGGCTTTTGAAGACGCCAAAGATTGTCTG 1851
Query 1834 CTTTCGTTACAAAATTCAGTTGTTAAGCTACATCAGAAGAAACTGTTTCCATACAACCCA 1893
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1852 CTTTCGTTACAAAATTCAGTTTTTAAGCTACATCAGAAGAAACTGTTTCCATACAACCCA 1911
Query 1894 GAGGCTCTTCTACGACGTTTGTCAAGGTTTCATGAGCTCTGTCTATCCCATGAGTAA-TA 1952
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1912 GAGGCTCTTCTACGACGTTTGTCAAGGTTTCAAGAGCTCTGTCTATCCCATGAGTAAATA 1971
Query 1953 TATCTGGACCAAAGGTGAGATTCTCTGAGACAGAACAGAAGGATCAGATGCCAACACAAA 2012
||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1972 TATCTGGCCCAAAGGTGAGATTCTCTGAGACAGAA--G--G-ATCAGATGCCAACACAAA 2026
Query 2013 GAAGTCTCCTTTCCAGATCAAATTTCAAACTAATCGGCTCACCAGTAGAAGTGTATAG-A 2071
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |
Sbjct 2027 GAAGTCTCCTTTCCAGATCAAATTTCAAACTAATCGACTCACCAGTAGAAGTTTAT-GTA 2085
Query 2072 -GATCCTACATTCTTTGGTTGGTGCAGCTGCTATGAAACAGAGAGCATTATGTTCTTGCC 2130
| | | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2086 AGTTTG-AGAATCTTTGGTTGGTGCAGCTGCTATGAAACAGAGAGCATTATGTTCTTGCC 2144
Query 2131 TCCACAATCCAAATCTGAATGGTATAAGATACTCTCTAGTCAAGCTAATGTGAAACTGCC 2190
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 TCCCCAATCCAAATCTAAATGGTATAAGATACTCTCTAGTCAAGCTAATGTGAAACTGCC 2204
Query 2191 CCAGCCAATTAGAGTAAGCAATGAAGTGTAGAATATCAAGAATCACAAATATTGAAACTC 2250
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2205 CCAGCCAAATACAGTAAGCAAGGAAGTGTAGAATATCAAGAATCACAAATATTGAAACTC 2264
Query 2251 TCTTATTCATATCATAGATGTAACTGAGCCCAAATCATACACAGGTGTCATCATTTTACA 2310
|||||||||||||||| |||||||||||||||||||||||| | | | |||||||||||
Sbjct 2265 TCTTATTCATATCATAAATGTAACTGAGCCCAAATCATACATTG-T-T-ATCATTTTACA 2321
Query 2311 TTTAGTTATATTTCGCTGC 2329
|||||||||||||||||||
Sbjct 2322 TTTAGTTATATTTCGCTGC 2340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87721834235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5