BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50450.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348154 jgi|Araly1|348154|fgenesh1_pg.C_scaffold_5001546 843 0.0
> Ahg348154 jgi|Araly1|348154|fgenesh1_pg.C_scaffold_5001546
Length=570
Score = 843 bits (456), Expect = 0.0
Identities = 535/573 (93%), Gaps = 6/573 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCTTGTTGAGCTTCTTACAAGTGCTGCTCTTGGA-TTGTCCCTCCAACTCCTTCA 59
|||||||||||||||||| || || |||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATGCCTCTTGTTGAGCTTTTTGCAGGTGCTGCTCTTGGATTTG-CCCTCCAACTCCTTCA 59
Query 60 CGACGCCATCATAAGAGCCAAGGAGAGATCCTTAATCACAAGATGTATATTGGACCGTCT 119
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGAGGCCATCATAAGAGCCAAAGAGAGATCCTTAATCACAAGATGTATATTGGACCGTCT 119
Query 120 CGATGCTACACTCCATAAGATAACTCCATTTGTCATTAAGATCGATACCCT-CACCGAAG 178
|||||||||| || ||||||| ||||||||||||| ||||||||||| | | ||||||||
Sbjct 120 CGATGCTACAATCTATAAGATCACTCCATTTGTCAATAAGATCGATA-CGTGCACCGAAG 178
Query 179 AAGTCGATGAACCTTTCAGAAAAGTCATCGAAGAGCTTAAACGTCTTCTCGAGAAAGCCA 238
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 AAGTCGATGAACCTTTGAGGAAAGTCATCGAAGAGCTTAAATGTCTTCTCGAGAAAGCCA 238
Query 239 TTCGTCTCGTTGATGCTTATGCGGAGCTTAAACTCCGAAACTTACTCAGGAAATATAGGT 298
||||||| ||||| |||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 239 TTCGTCTTGTTGAGGCTTATGCAGAGCTTAAACGCAGAAACTTACTCAGGAAATATAGGT 298
Query 299 ACAAGAGAAGAATCAAGGAGTTGGACT-CTTCTTTGAGATGGATGATAGATGTGGATGTT 357
||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 299 ACAAGAGAAGAATCAAGGAGTTGGA-TGCTTCTTTGAGATGGATGGTAGATGTGGATGTT 357
Query 358 CAAGTCAATCAATGGCTGGATATCAAAAAACTTATGGGTAAGATGTCTGAAATGAACACT 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 CAAGTCAATCAATGGCTGGATATCAAAAAACTTATGGGTAAGATGTCTGAAATGAATACG 417
Query 418 AAACTCGATGATATTACGCGTCAACCAATGGATATCATCGAAGCAACTGGTCGATCTTCT 477
||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 418 AAACTTGATGAGATTACGAGTCAACCAATAGATATAATCGAAGCAACTGGTCGATCTTCT 477
Query 478 GAAGAAGATGGATGCACAAAGCCAACGATTGATATACACTTTCGATGGAAAAACCAGACC 537
||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| ||||||
Sbjct 478 GAAGAAGATGGATGCTCAAAGCCAAAGATTGATATACATTTTAGATGGAAAAAACAGACC 537
Query 538 AAAGAGCACGAGATCCGGTTCATCTTCAAATGA 570
||||||||||||||||||||||||||||| |||
Sbjct 538 AAAGAGCACGAGATCCGGTTCATCTTCAATTGA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5