BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50460.1
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485397 jgi|Araly1|485397|fgenesh2_kg.5__1389__AT3G50460.1 939 0.0
> Ahg485397 jgi|Araly1|485397|fgenesh2_kg.5__1389__AT3G50460.1
Length=621
Score = 939 bits (508), Expect = 0.0
Identities = 585/622 (94%), Gaps = 5/622 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCTTACCGAGATTATCGCAGGGGCTGCTCTTGGACTTGCTCTCCAAATCCTTCAC 60
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGCCTCTTGCCGAGATTATCGCAGGGGCTGCCCTTGGACTTGCTCTCCAAATCCTTCAC 60
Query 61 GAGGCCATCCAAAGAGCAAAAGATAGATCCTTAACCACAAGTTGTATCTTGGACCGTCTC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GATGCCATCCAAAGAGCAAAAGATAGATCCTTAACCACAAGTTGTATCTTGGATCGTCTT 120
Query 121 GATTCTACAATCTTGAGGATCACTCCACTGATGGCTAAGGTCGAAAAGCTCA-ACAAAGA 179
|||||||| |||||||||||| ||||| |||| |||||||||||||||||| | |||||
Sbjct 121 GATTCTACCATCTTGAGGATCTCTCCATTGATCGCTAAGGTCGAAAAGCTCGGA-AAAGA 179
Query 180 ATCCGATGAATCTCTGAGGAAAGTCTTCGAAGATCTTAAACATCTTCTCGAGAAAGCCGT 239
||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 180 ATCCGATGAATCTATGAGGAAAGTCATCAAAGATCTTAAACATCTTCTAGAGAAAGCCGT 239
Query 240 GGTTCTTGTCGAAGCTTATGCGGAGCTCAAACGCAGAAACTTACTTGGAAAATATAGGTA 299
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 240 TGTTCTTGTCGAAGCTTATGCGGAGCTCAAACGCAGAAACTTGGTTGGAAAGTATAGGTA 299
Query 300 CAAGAGAAGAATCAAAGAGTTAGAAGGTTCATTGAAATGGATGGTAGATGTTGACGTTAA 359
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CAAGAGAAGAATTAAAGAGTTAGAAGGTTCATTGAAATGGATGGTAGATGTTGATGTTAA 359
Query 360 AGTCAATCAATGGGCAGATATCAAAGATCTTATGGCCAAGATGTCTGAAATGAACACTAA 419
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AGTGAATCAATGGGCAGATATCAAAGATCTCATGGCCAAGATGTCTGAAATGAACACTAA 419
Query 420 ACTTGAAAAAATCATGGGTCAACCAATAGATTGTATTATATCTGA--AG-ATAATACTAA 476
||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 420 ACTAGATAAAATCATGGGCCAACCAATAGATTGTATTATATCTGATGAGGATAATACTAA 479
Query 477 TATGGACATAGTCGAAAGAGTTGATCCATCATTGGAAGCAAAAGCTGGATGCTCAAATAG 536
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 480 TCTGGACATAGTCGAAAGAGTTGATCCATCATTGGAAGCCAAAGCTGGATGCTCAAATGG 539
Query 537 CGATTCTAAGCCGAAGATCGATATCCACCTTCGATGGAGCAAGCAAAGCAAAGATCACGG 596
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 CGATTCTAAGCCGAAGATTGATATCCACCTTCGATGGAGCAAGAAAAGCAAAGATCACGG 599
Query 597 AATTCGCTTCGTTTTGAATTAG 618
| |||| |||||||||||||||
Sbjct 600 AGTTCGATTCGTTTTGAATTAG 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22606889781
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5