BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50500.2
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485399 jgi|Araly1|485399|fgenesh2_kg.5__1391__AT3G50500.1 1949 0.0
Ahg951543 jgi|Araly1|951543|scaffold_803430.1 941 0.0
> Ahg485399 jgi|Araly1|485399|fgenesh2_kg.5__1391__AT3G50500.1
Length=1410
Score = 1949 bits (1055), Expect = 0.0
Identities = 1279/1377 (93%), Gaps = 56/1377 (4%)
Strand=Plus/Plus
Query 203 TAATCTGATGTGATTAG-GAAGAGCAATAGAGGAAG-AGAAGAATCAGAAAAAATGGAT- 259
||||||||||||||| | |||||| || || || ||||||||||| |||||||||
Sbjct 81 TAATCTGATGTGATT-GAGAAGAG--TTA-CGG-AGTAGAAGAATCAG--AAAATGGATC 133
Query 260 C--CGGCGACTAATTCACCGATTATGCCGATTGATTTACCGATTATGCACGACAGTGATC 317
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CGGCGGCGACTAATTCACCGATTATGCCGATTGATTTACCGATTATGCACGACAGTGATC 193
Query 318 GTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTCGGCGTTGCTCGTCTCATGACCG 377
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 194 GTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTCGGTGTTGCTCGTCTCATGACTG 253
Query 378 ATAGAGTCACCAAGGAGCTTGTTGCTGTTAAATACATCGAGAGAGGAGAAAAGATTGATG 437
||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 254 ATAAAGTCACGAAGGAGCTTGTTGCTGTTAAGTACATCGAGAGAGGAGAAAAGATTGATG 313
Query 438 AAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGT 497
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 314 AAAATGTTCAGAGGGAGATTATTAATCATAGATCATTGAGACATCCTAATATTGTCAGGT 373
Query 498 TTAAAGAGGTGATTTTGACGCCTTCCCATTTGGCTATTGTTATGGAATATGCTGCTGGTG 557
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 374 TTAAAGAGGTGATTTTGACGCCTACCCATTTGGCTATTGTTATGGAATATGCTGCTGGTG 433
Query 558 GAGAACTTTATGAGCGGATTTGTAATGCCGGACGGTTTAGTGAAGATGAGGCTCGGTTCT 617
||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||
Sbjct 434 GAGAACTTTATGAGCGGATTTGTGTTGCAGGGCGGTTTAGTGAAGACGAGGCTCGGTTCT 493
Query 618 TCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCAATGCAAATATGCCATCGGG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCAATGCAAATATGCCATCGGG 553
Query 678 ATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTG 737
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 554 ATCTGAAGCTGGAAAATACATTGTTGGACGGAAGTCCGGCACCTCGTTTGAAAATATGTG 613
Query 738 ATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGTCTTCTGTTCTTCATTCCCAAC 797
| || || || | || | || ||||||||||||||||||||||||||
Sbjct 614 A------TT-TT----GG----A--TA--T-TC-CAAGTCTTCTGTTCTTCATTCCCAAC 652
Query 798 CAAAGTCAACTGTTGGTACTCCTGCATACATTGCACCAGAGATTCTTCTTCGACAGGAAT 857
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 653 CAAAGTCAACTGTTGGTACTCCTGCTTACATTGCACCAGAGATTCTTCTTCGACAGGAAT 712
Query 858 ATGATGGCAAGCTTGCAGATGTATGGTCTTGCGGTGTAACATTATATGTAATGTTGGTTG 917
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 713 ATGATGGCAAGCTTGCAGATGTTTGGTCATGCGGTGTAACCTTATATGTAATGTTGGTTG 772
Query 918 GAGCTTATCCATTCGAGGATCCACAGGAGCCACGAGATTATCGAAAGACAATACAAAGAA 977
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 773 GAGCTTATCCATTCGAGGATCCACAAGAGCCACGAGATTATCGAAAGACAATACAAAGAA 832
Query 978 TCCTTAGTGTCACATACTCGATCCCAGAGGACTTACACCTCTCACCAGAATGTCGCCATC 1037
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 833 TTCTTAGTGTCACATACTCGATCCCAGAGGACTTACACCTTTCACCAGAATGTCGCCACC 892
Query 1038 TAATATCGAGGATCTTCGTGGCTGATCCGGCAACAAGAATCACTATTCCGGAGATCACAT 1097
||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 893 TAATATCGAGGATTTTCGTGGCCGATCCTGCAACAAGGATCACTATTCCGGAGATCACAT 952
Query 1098 CCGATAAATGGTTCTTGAAGAATCTACCAGGTGATTTGATGGATGAGAACCGAATGGGAA 1157
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 953 CCGATAAATGGTTCTTGAAGAATCTTCCAGGTGATTTGATGGATGAGAACAGAATGGGTA 1012
Query 1158 GTCAGTTTCAAGAGCCTGAGCAGCCAATGCAGAGCCTTGACACGATTATGCAGATAATAT 1217
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 GTCAGTTTCAAGAGCCTGAGCAGCCGATGCAGAGCCTTGACACGATTATGCAGATAATAT 1072
Query 1218 CGGAGGCTACGATTCCGACTGTTCGTAATCGTTGCCTCGATGATTTCATGGCGGATAATC 1277
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1073 CAGAGGCTACGATTCCGACTGTTCGTAATCGTTGCCTTGATGATTTCATGGCGGATAATC 1132
Query 1278 TTGATCTAGACGATGACATGGATGACTTTGATTCCGAATCTGAGATTGATGTTGACAGTA 1337
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TTGATCTAGATGATGACATGGATGACTTTGATTCCGAATCTGAGATTGATGTTGACAGTA 1192
Query 1338 GTGGAGAGATAGTTTATGCTCTCTGAGATTCCTGAGGACAAAGTCTGTTTTGTCCGTACT 1397
||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1193 GTGGAGAGATAGTTTATGCTCTCTGAGATTCCT----------T-TGT-----CCGTACT 1236
Query 1398 GTTGAGACACACCACTGGAGTTTTGTCTTAGCTCCACGCACTCCATCGTTCATTTTTGGA 1457
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1237 GTTGAGACACACCAGTGGAGTTTTGTCTTAGCTCCAT----TCCATCGTTCATTTTTGGA 1292
Query 1458 TCGTTTGTTGTTTTTTACTCTACAAGCTTTGGATTCACATACatatatatgtattgtaat 1517
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1293 TCGTTTGTTGTTTTTTACTCTACAAGCTTTGGATTCACATACATATAT--GTATTGTAAT 1350
Query 1518 gtaatatgtaatatattctatgtatTTCTCTTTGTTTAATAACTATTGGCACATTTT 1574
||||| ||||||||||| | || |||||||||||||||||||||||||| |||||||
Sbjct 1351 GTAATGTGTAATATATT-TCTGAATTTCTCTTTGTTTAATAACTATTGGGACATTTT 1406
> Ahg951543 jgi|Araly1|951543|scaffold_803430.1
Length=1131
Score = 941 bits (509), Expect = 0.0
Identities = 889/1070 (83%), Gaps = 35/1070 (3%)
Strand=Plus/Plus
Query 299 ATTATGCACGACAGTGATCGTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTCGGC 358
|||||||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||
Sbjct 64 ATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTTGGT 123
Query 359 GTTGCTCGTCTCATGACCGATAGAGTCACCAAGGAGCTTGTTGCTGTTAAATACATCGAG 418
||||||||||| |||| |||| | |||| || |||||||||||||| || |||||||||
Sbjct 124 GTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATCGAG 183
Query 419 AGAGGAGAAAAGATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGA 478
|||||||| ||||||||||| |||||||| ||||| || || || || || || || ||
Sbjct 184 AGAGGAGACAAGATTGATGAGAATGTTCAAAGGGAAATAATTAACCACAGGTCGTTAAGG 243
Query 479 CATCCTAATATTGTTAGGTTTAAAGAGGTGATTTTGACGCCTTCCCATTTGGCTATTGTT 538
|||||||||||||| || ||||||||||| |||||||| || | ||| ||||||| ||
Sbjct 244 CATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACACCGACTCATCTGGCTATCGTA 303
Query 539 ATGGAATATGCTGCTGGTGGAGAACTTTATGAGCGGATTTGTAATGCCGGACGGTTTAGT 598
|||||||||||| |||| || |||||||| ||||||||||| | ||| ||||||||||||
Sbjct 304 ATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCATTGCAGGACGGTTTAGT 363
Query 599 GAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCA 658
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 364 GAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTCAGTTATTGTCATGCA 423
Query 659 ATGCAAATATGCCATCGGGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCA 718
|||||||| |||||||| || |||||||| || ||||||||||| ||||| ||||| ||
Sbjct 424 ATGCAAATTTGCCATCGCGACCTGAAGCTCGAGAATACATTGTTGGATGGGAGTCCTGCT 483
Query 719 CCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGTCT 778
||||| || ||||| ||||||||||| ||||| || | ||||
Sbjct 484 CCTCGATTAAAAATTTGTGATTTTGGATATTC-AA---A-----------------GTCT 522
Query 779 TCTGTTCTTCATTCCCAACCAAAGTCAACTGTTGGTACTCCTGCATACATTGCACCAGAG 838
|||||||||||||| ||||||||||||||||| || |||||||||||||| || || |||
Sbjct 523 TCTGTTCTTCATTCACAACCAAAGTCAACTGTCGGGACTCCTGCATACATCGCTCCGGAG 582
Query 839 ATTCTTCTTCGACAGGAATATGATGGCAAGCTTGCAGATGTATGGTCTTGCGGTGTAACA 898
|||| ||||| |||||||||||||||||| |||||||||||||||| || ||||| ||
Sbjct 583 GTTCTGCTTCGTCAGGAATATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACC 642
Query 899 TTATATGTAATGTTGGTTGGAGCTTATCCATTCGAGGATCCACAGGAGCC-ACGAGATTA 957
||||| || |||||||||||||||||||| ||||| |||||| | ||||| | |||| ||
Sbjct 643 TTATACGTCATGTTGGTTGGAGCTTATCCGTTCGAAGATCCAGATGAGCCTA-GAGACTA 701
Query 958 TCG-AAAGACAATACAAAGAATCCTTAGTGTCACATACTCGATCCCAGAGGACTTACACC 1016
||| ||| |||||||| ||||||||||| || | |||||| ||||| || ||| |||
Sbjct 702 TCGGAAA-ACAATACAGAGAATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGA 760
Query 1017 TCTCACCAGAATG-TCGCCATCTAATATCGAGGATCTTCGTGGCTGATCCGGCAACAAGA 1075
| ||||| ||||| | | |||||||| || || ||||| ||||||||||| || || |||
Sbjct 761 TATCACCTGAATGCT-GTCATCTAATTTCAAGAATCTTTGTGGCTGATCCCGCTACTAGA 819
Query 1076 ATCA-CTATTCCGGAGATCACATCCGATAAATGGTTCTTGAAGAATCTACCAGGTGATTT 1134
|| | | ||||| ||||||| | || |||| ||||||||||||||||| |||| |||| |
Sbjct 820 ATTAGC-ATTCCAGAGATCAAAACCCATAATTGGTTCTTGAAGAATCTCCCAGCTGATCT 878
Query 1135 GA-TGGATGAGAACCGA-ATGGGAAGTCAGTTTCAAGAGCCTGAGCAGCCAATGCAGAGC 1192
| || | |||| | | | ||||| || ||||| |||||||| || ||||||||||||
Sbjct 879 -ACTGAACGAGAGCA-ACACAGGAAGCCAATTTCAGGAGCCTGAACAACCAATGCAGAGC 936
Query 1193 CTTGACACGATTATGCAGATAATATCGGAGGCTACGATTCC-GACTGTTCGTAATCGTTG 1251
|||||||| || ||||| || || || || || || ||||| | ||||||| || |||||
Sbjct 937 CTTGACACAATCATGCAAATCATCTCTGAAGCCACAATTCCCG-CTGTTCGAAACCGTTG 995
Query 1252 CCTCGATGATTTCATGGCGGATAATCTTGATCTAGACGATGACATGGATGACTTTGATTC 1311
||| || ||||||||| | || ||||||||||| |||||||||||||||||||| |||||
Sbjct 996 CCTAGACGATTTCATGACAGACAATCTTGATCTTGACGATGACATGGATGACTTCGATTC 1055
Query 1312 CGAATCTGAGATTGATGTTGACAGTAGTGGAGAGATAGTTTATGCTCTCT 1361
|||||||| || || |||||||||| |||||||||||||| |||||||
Sbjct 1056 TGAATCTGAAATCGACATTGACAGTAGCGGAGAGATAGTTTACGCTCTCT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5