BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50510.1

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897938 jgi|Araly1|897938|Al_scaffold_0005_1904                    586    8e-167


> Ahg897938 jgi|Araly1|897938|Al_scaffold_0005_1904
Length=561

 Score =  586 bits (317),  Expect = 8e-167
 Identities = 452/517 (87%), Gaps = 10/517 (2%)
 Strand=Plus/Plus

Query  26   ATGATGTTTCATCAAATGGACAAAATATCGACACCATGCGCGGCATGCAAGCACCTGAGG  85
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGTTGTTTCATCAAATGGACAAAATATCGACACCATGCGCGGCATGCAAGCAGCTGAGG  60

Query  86   AGAAAATGCACAGAAGATTGTGTGTTTGCGCCTTACTTCCCCTCGACTAAACTGGACAAC  145
            |||||||||||| ||||||||||||||||||||||||||||| |||| ||||  || |||
Sbjct  61   AGAAAATGCACAAAAGATTGTGTGTTTGCGCCTTACTTCCCCACGACCAAACAAGAAAAC  120

Query  146  TACGAAGCGGTTCACAAGGTATTTGGAGCAAGCCATGTGGCTACACTTATCAAC-AGTCT  204
            ||||||||||| ||||||||||| || ||||||||||||||||||||||||||| | |||
Sbjct  121  TACGAAGCGGTCCACAAGGTATTCGGTGCAAGCCATGTGGCTACACTTATCAACGA-TCT  179

Query  205  TCACCCAT-GCCAA-AGAGAATTTGCCATGGACACGC-TCGCTTGGGAGGCACAAGTTCA  261
             ||||||| |  || ||||||||||||||| ||| || ||||||||||||||| ||||| 
Sbjct  180  GCACCCATTG--AAGAGAGAATTTGCCATGAACA-GCCTCGCTTGGGAGGCACGAGTTCG  236

Query  262  AGCCAATGATCCGGTCAATGGCTGTCTGGG-TATCATTTACAACCTCCTTAGTCAGATTA  320
             | ||| ||||||||| ||||||| |  || ||||||| ||  ||||   |||||| |||
Sbjct  237  TGTCAAAGATCCGGTCTATGGCTG-CACGGCTATCATTGACCGCCTCGAAAGTCAGCTTA  295

Query  321  AAGACTTGGAAGAACAACTCGCGATCGTCAAGAACGAACTTGCCTCTTACTGTATCGTCC  380
            |||||| |||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct  296  AAGACTCGGAAGAACAACTCGCGATGGTCAAGAACGAGCTCGCCTCTTACGGTATCGTCC  355

Query  381  CCACATTTGTGCCACCACCTTCGATGACGAATCTGGAAATGCATAACAATCCTATGATGA  440
            | |||| ||||||| | ||| |||||| | ||| | ||||||||||||||||||||| ||
Sbjct  356  CGACATGTGTGCCATCGCCTCCGATGATGTATCAGCAAATGCATAACAATCCTATGACGA  415

Query  441  TACCGGAACACACACCTAATAACGGTGGTTGTTTAACGGGTCAACAGTTGTATAACGAGG  500
            || ||||| | |||||||| || ||||||| ||||||||||||||||||  || ||||||
Sbjct  416  TATCGGAATATACACCTAACAATGGTGGTTTTTTAACGGGTCAACAGTTACATGACGAGG  475

Query  501  CTCAACGTTTTGCATCCACACAAAGCGCTCAAATGCA  537
            | |||||||||| |||||||||| |||||||||||||
Sbjct  476  CACAACGTTTTGTATCCACACAACGCGCTCAAATGCA  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27143516904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5