BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50520.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485400 jgi|Araly1|485400|fgenesh2_kg.5__1392__AT3G50520.1 1127 0.0
> Ahg485400 jgi|Araly1|485400|fgenesh2_kg.5__1392__AT3G50520.1
Length=904
Score = 1127 bits (610), Expect = 0.0
Identities = 720/771 (93%), Gaps = 16/771 (2%)
Strand=Plus/Plus
Query 135 GGTCATTTGGATGTTGAGTTAAATGATGCAGGAAGACAACAAGCACAAAGAGTTGCAGAG 194
||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||| |||
Sbjct 148 GGTCATTTGGATGTTGAGTTAAACGATGCTGGAAGACAACAAGCAGAGAGAGTTGCGGAG 207
Query 195 CGGTTATCGAAGGAGCAGAAGATATCTCATGTATACTCTTCTGACTTGAAGAGAGCCTTT 254
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 208 CGGTTATCGAAGGAGCTGAAGATATCTCATGTCTACTCTTCTGACTTGAAGAGAGCCTTT 267
Query 255 GAGACTGCTCAGATCATTGCTGCTAAATGCGGCAAGCTTGAGGTGCTTACCGATCGTGAT 314
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 268 GAGACTGCTCAGATCATTGCTGCTAAATGTGGCAAGCTTGAGGTACTTACTGATCGTGAT 327
Query 315 TTGCGGGAAAGACATTTAGGAGATATGCAAGGGCTTGTGTATCAAGAAGCTTCGAAAATT 374
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TTACGGGAAAGGCATTTAGGAGATATGCAAGGGCTTGTGTATCAAGAAGCTTCGAAAATT 387
Query 375 CGCCCGGAAGCTTACAAGGCTTTTTCATCTAACCGCACAGACGTTGATATTCCAGGTGGA 434
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 388 CGCCCGGAAGCTTACAAGGCCTTTTCATCTAACCGCACAGACGTTGATATTCCAGGTGGA 447
Query 435 GGAGAAAGTCTTGACAAACTTTACGATAGATGTACAACTGCATTACAGAGAATCGGCGAC 494
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 448 GGAGAAAGTCTTGATAAACTTTACGACAGATGTACATCTGCATTACAGAGAATCGGCGAC 507
Query 495 AAACATAAAGGTGAAAGGA-TAGTAGTAGTGACTCATGGAGGTGTGATCCGATCTCT-CT 552
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |
Sbjct 508 AAACATAAAGGTGAAA-GAGTAGTAGTAGTGACTCATGGAGGTGTGATTCGATCTCTAC- 565
Query 553 ACGAAAGAGCTCGTCCAAGTGCAAGAAAAGTTGAAAAGATACTCAATACATCGGTCAATG 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 ACGAAAGAGCTCGTCCAAGTGCAAGAAAAGTTGAAAAGATACTCAATACATCGGTCAATG 625
Query 613 TGTTCCGTTTATTCGACGGAGACAAATGGACCATCCAAGTTTGGGGTGATGTGAGTCATC 672
|||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 626 TGTTCCGTTTATTCGATGGAGAGAAATGGACTATCCAAGTTTGGGGCGATGTGAGTCATC 685
Query 673 TGGAGGAAACCGGCTTCTTACAATCAGGTTTTGGTGGTGATAGAACCTCTGGTTAGAGAG 732
| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 686 TCGACCAAACCGCCTTCTTACAATCAGGTTTTGGTGGTGATAGAACCTCTGGCTAGA--- 742
Query 733 ATTCTATACTCTTAGTCTTCTTCCCCTTGGAAGAGCATTTATGTAATTTAAGTTTCACTC 792
|||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 743 -TTCTATACTCTT---CTTCT-CC--TTGGAGGAGCATTTATGTAATTTAAGTTTCACTC 795
Query 793 CATAACTTTTCAATTTTTAACATTTGACCCCATTACTTTGATAAAGTGATTTGGGAGGAT 852
| ||||||| |||||| ||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct 796 CTTAACTTTACAATTTA-AACATTTGACCCCATAACTTTGATAAAGTAATT-GGGAGGAT 853
Query 853 TGATAAAGTAAATTGCTATAAATTTCTACAGTCAAATGTTATATGGTTCAC 903
|||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 854 TGATAAAGTAAATTACTATAAATTTCAACAGTCAAAGGTTATATGGTTCAC 904
Score = 165 bits (89), Expect = 5e-40
Identities = 107/115 (93%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 24 TCAGCATCTCCCATGGAGGAATCAAGATTCGATTCTGAAGATG-T-T-GATTATGCTGAG 80
|||||||||||||||||||||||||||||||||| |||||| | | | ||||||||||||
Sbjct 1 TCAGCATCTCCCATGGAGGAATCAAGATTCGATTGTGAAGAAGATCTTGATTATGCTGAG 60
Query 81 ATTGTTGTTGTTCGTCATGGTGAAACATCTTGGAATGCCGAGAGAAAAATCCAGG 135
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 61 ATTGTTGTTGTTCGTCATGGAGAGACATCTTGGAATGCAGAGAGAAAAATCCAGG 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5