BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50530.2
Length=2477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485401 jgi|Araly1|485401|fgenesh2_kg.5__1393__AT3G50530.1 1609 0.0
Ahg905521 jgi|Araly1|905521|Al_scaffold_0003_2649 339 8e-92
Ahg905516 jgi|Araly1|905516|Al_scaffold_0003_2644 339 8e-92
Ahg905526 jgi|Araly1|905526|Al_scaffold_0003_2654 333 4e-90
Ahg905519 jgi|Araly1|905519|Al_scaffold_0003_2647 254 3e-66
> Ahg485401 jgi|Araly1|485401|fgenesh2_kg.5__1393__AT3G50530.1
Length=2275
Score = 1609 bits (871), Expect = 0.0
Identities = 1109/1212 (92%), Gaps = 64/1212 (5%)
Strand=Plus/Plus
Query 3 TAATTAAAAAGCGAACGTATCGTCGTTTCTCTTTTTAACTCATTCTCTTTGGATCCAAAT 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAATTAAAAAGCGAACGTATCGTCGTTTCTCTTTTTAACTCATTCTCTTTGGATCCAAAT 60
Query 63 CTTTCGCTTTGGAATTCGCCATTGACAAAGTACTCAATTCCAAAACAAAGAATAAGCAAA 122
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 61 CTTTCGCTTTGGAATTCGCCATTGACAAAGGAGACACTTCCAAAACAAAGAATAAGCAAA 120
Query 123 CAACAACAATTTTCACTTCCTTCAAAAATTATAAAAATCCAgtttttatctttgcaagat 182
| ||| | | ||||||| | ||||||||| ||||||||||
Sbjct 121 -A-------TTT--A-T------AAAAATT--------C-AGTTTTTATTTTTGCAAGAT 154
Query 183 tcaaaagtttgaatttttacttgttttgatttctgggttttgtttgttttttgatttcgg 242
|||||||||||||||||||||||| | || |||| | | ||||||
Sbjct 155 TCAAAAGTTTGAATTTTTACTTGT---G------GG-TTTT-T--G-------ATTTCGA 194
Query 243 taatgatacaattgagattttgatttCGTGTGATGTTGAGAGA--TTCTTAAATGGGTCT 300
||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| |||||||
Sbjct 195 TAATGATACAATTCAGATTTTGATT-CGTGTGATGTTGAGAGAGATTCGTAA-TGGGTCT 252
Query 301 ATGTACTTCGAAACCGAATTCATCTAATTCCGATCAAACTCCGGCGAGGAATAGTCCACT 360
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 253 CTGTACTTCGAAACCGAATTCACCTAATTCCGATCAAATTCCGGCGAGGAATAGTCCACT 312
Query 361 TCCGGCGTCTGAATCCGTCAAGCCTTCGAGCTCTTCCGTTAATGGTGAAGATCAGTGTGT 420
||||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 313 TCCGGCGTCGGAATCCGTCAAGCCTTCAAGCTCT------AATG---AAGATCAGTGTGT 363
Query 421 AACAACAACGAACAATGAAGGCAAAAAGTCTCCGTTTTTCCCTTTTTATAGTCCAAGTCC 480
|||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 364 AACAAC---GAACAATGAGGGAAAAAAGTCTCCGTTTTTCCCTTTTTATAGTCCGAGTCC 420
Query 481 AGCTCACTATTTCTTCTCCAAGAAGACTCCGGCGAGATCTCCGGCGACTAATTCGACTAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGCTCACTATTTCTTCTCCAAGAAGACTCCGGCGAGATCTCCGGCGACTAATTCGACTAA 480
Query 541 TTCGACTCCGAAGCGATTCTTTAAACGGCCGTTTCCTCCTCCGTCTCCGGCTAAACATAT 600
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 481 TTCGACTCCGAAGCGATTCTTTAAACGACCGTTTCCTCCTCCGTCTCCGGCGAAACACAT 540
Query 601 CAGAGCTGTTTTAGCGAGAAGGCATGGTTCTGTGAAGCCTAATTC-GTCGGCGATCCCTG 659
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 541 CAGAGCTGTTTTAGCGAGAAGGCATGGCTCTGTGAAGCCTAATTCTG-CGGCGATCCCTG 599
Query 660 AAGGTAGTGAAGCTGAAGGAGGTGGTGTTGGATTGGATAAAAGCTTTGGTTTTTCCAAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGGTAGTGAAGCTGAAGGAGGTGGTGTTGGATTGGATAAAAGCTTTGGTTTTTCCAAGA 659
Query 720 GTTTTGCGAGTAAGTATGAGCTTGGTGATGAAGTTGGTCGTGGTCATTTTGGTTATACTT 779
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 GCTTTGCGAGTAAGTATGAGCTTGGTGATGAAGTTGGTCGTGGTCATTTTGGATATACTT 719
Query 780 GTGCTGCTAAGTTTAAGAAGGGTGATAATAAAGGTCAACAAGTCGCGGTTAAAGTCATTC 839
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || |
Sbjct 720 GTGCTGCTAAGTTTAAGAAAGGTGATAATAAAGGACAACAAGTCGCTGTTAAAGTTATCC 779
Query 840 CCAAAGCAAAGATGACGACGGCTATTGCAATTGAAGATGTGAGAAGGGAAGTGAAGATAT 899
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 CCAAAGCAAAGATGACGACGGCTATTGCAATTGAAGATGTGAGGAGGGAAGTGAAGATAT 839
Query 900 TGAGGGCTTTGTCTGGTCATAACAATCTTCCTCATTTCTATGATGCTTATGAGGATCATG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGGGCTTTGTCTGGTCATAACAATCTTCCTCATTTCTATGATGCTTATGAGGATCATG 899
Query 960 ATAATGTCTATATAGTGATGGAACTATGTGAAGGAGGAGAGCTTTTGGATAGAATACTTT 1019
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 ATAATGTCTATATAGTGATGGAGCTATGTGAAGGAGGAGAGCTTTTGGATAGAATACTTT 959
Query 1020 CAAGAGGTGGGAAGTACACAGAGGAGGATGCAAAGACCGTTATGATACAAATATTGAATG 1079
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 CAAGAGGTGGGAAATACACAGAGGAGGATGCAAAGACTGTTATGATACAAATATTGAATG 1019
Query 1080 TGGTTGCTTTTTGTCATCTGCAAGGCGTTGTACACAGAGATCTTAAACCAGAGAATTTTC 1139
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGTTGCCTTTTGTCATCTCCAAGGTGTTGTACACAGAGATCTTAAACCAGAGAATTTTC 1079
Query 1140 TTTTTACCTCAAAAGAAGACACCTCTCAATTGAAGGCAATAGATTTCGGTTTGTCAGATT 1199
| |||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 1080 TCTTTACCTCAAAAGAAGACACCTCTCAGTTAAAGGCAATAGATTTTGGTTTGTCGGATT 1139
Query 1200 ACGTGAGACCAG 1211
||||||||||||
Sbjct 1140 ACGTGAGACCAG 1151
Score = 1511 bits (818), Expect = 0.0
Identities = 899/939 (96%), Gaps = 2/939 (0%)
Strand=Plus/Plus
Query 1302 CAGATGAGAGGCTCAATGACATTGTTGGTAGTGCATACTATGTAGCACCTGAAGTTCTGC 1361
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1149 CAGATGAGAGGCTCAATGACATTGTTGGCAGTGCATACTATGTAGCACCTGAAGTTCTAC 1208
Query 1362 ATAGATCTTACAGTACAGAAGCTGATATTTGGAGTGTTGGTGTGATTGTATATATTCTAT 1421
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1209 ATAGATCTTACAGTACAGAAGCTGATATTTGGAGTGTTGGAGTGATTGTGTATATTCTAT 1268
Query 1422 TGTGTGGAAGCCGACCGTTTTGGGCTAGGACAGAATCAGGAATCTTTCGTGCTGTTCTAA 1481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1269 TGTGTGGAAGCCGACCGTTTTGGGCTAGGACAGAATCAGGAATATTTCGTGCTGTTCTAA 1328
Query 1482 AAGCTGATCCAAGTTTTGATGACCCTCCTTGGCCTTTGTTATCTTCAGAGGCAAGAGATT 1541
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AAGCAGATCCGAGTTTTGATGACCCTCCTTGGCCTTTGTTATCTTCAGAGGCAAGAGATT 1388
Query 1542 TTGTAAAGCGGTTGCTAAACAAAGATCCGCGTAAAAGATTAACAGCTGCTCAAGCCTTAA 1601
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1389 TTGTAAAGCGGTTGCTAAACAAAGACCCGCGTAAAAGATTAACAGCTGCTCAAGCCTTAA 1448
Query 1602 GTCATCCATGGATAAAGGACTCAAACGACGCAAAGGTTCCAATGGATATTCTGGTTTTCA 1661
|||||||||||||||| ||||| || ||||||| |||||| ||||||||||||||||||
Sbjct 1449 GTCATCCATGGATAAAAGACTCTAATAACGCAAACGTTCCATTGGATATTCTGGTTTTCA 1508
Query 1662 AACTTATGAGAGCTTATTTACGATCATCATCTCTCCGTAAAGCTGCATTAAGAGCTTTAT 1721
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 1509 AACTTATGAGAGCTTATTTACGATCATCATCTCTTCGTAAAGCTGCATTAAGGGCCTTGT 1568
Query 1722 CGAAAACACTTACGGTTGATGAACTGTTTTATCTGAGAGAGCAGTTTGCTTTGTTAGAAC 1781
||||||||||||| || |||||| ||||||||||||| ||||||||||| || ||||||
Sbjct 1569 CGAAAACACTTACAGTGGATGAATTGTTTTATCTGAGGGAGCAGTTTGCGTTACTAGAAC 1628
Query 1782 CTAGTAAGAACGGAACCATAAGTCTAGAAAACATCAAATCAGCTCTGATGAAAATGGCAA 1841
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CTAGTAAAAACGGAACCATAAGTCTAGAAAACATCAAATCAGCTCTGATGAAAATGGCAA 1688
Query 1842 CAGATGCGATGAAGGACTCACGTATTCCAGAGTTCTTAGGACAACTGAGTGCTCTTCAAT 1901
||||||| |||||||| || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1689 CAGATGCAATGAAGGATTCGCGTATTCCAGAATTCTTAGCACAACTGAGTGCTCTTCAAT 1748
Query 1902 ATAGAAGAATGGACTTTGAGGAATTCTGTGCAGCGGCATTGAGTGTTCACCAGCTAGAAG 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 ATAGAAGAATGGACTTTGAGGAATTCTGTGCAGCGGCATTGAGTGTTCACCAGCTAGAAG 1808
Query 1962 CTCTTGATCGATGGGAACAACACGCTCGTTGTGCTTATGAGCTTTTCGAAAAGGAAGGGA 2021
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1809 CTCTTGATCGATGGGAACAACACGCTCGTTGTGCTTATGAGCTTTTCGAAAAGGAAGGAA 1868
Query 2022 ACCGACCAATCATGATCGATGAACTCGCTTCGGAACTTGGTCTTGGCCCTTCTGTACCGG 2081
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1869 ACCGACCTATCATGATCGATGAACTCGCTTCGGAACTTGGTCTTGGTCCTTCTGTACCGG 1928
Query 2082 TTCACGCAGTGCTTCACGATTGGCTTAGACATACCGATGGGAAGCTTAGCTTTCTCGGAT 2141
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1929 TTCACGCAGTGCTTCACGATTGGCTTAGGCATACGGATGGGAAGCTTAGCTTTCTCGGAT 1988
Query 2142 TTGTGAAATTGCTACATGGTGTGTCTAGCCGCACGATCAAAGCTCATTAGAAGGGTTTTG 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 TTGTGAAATTGCTACATGGTGTGTCTAGCCGCACGATCAAAGCTCATTAGAAGGGTTTTG 2048
Query 2202 AAACTTTG-AATGATATGTATGAAATTTGTCTGAGCTCT 2239
|||||| | ||||||||||||||||| |||||||| |||
Sbjct 2049 AAACTT-GCAATGATATGTATGAAATCTGTCTGAGGTCT 2086
Score = 233 bits (126), Expect = 4e-60
Identities = 174/195 (89%), Gaps = 11/195 (6%)
Strand=Plus/Plus
Query 2282 TTTTGTTATGAAAGCTGAGAAGCAAAGAT-TATaaaaaaaaaTGAGTGTAGCaaaaaaaG 2340
||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||| ||
Sbjct 2089 TTTTGTTATGAAAGCTGAGAAGCAAAGATAAAAAAAAAAAAAAGAGTGTAGC-AAAGAA- 2146
Query 2341 AGAGAAGTGTGTTAG-TTTTGTAGAGAATGATATGATATTTTCCCCAAATTTGGTAACTT 2399
||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 2147 AGAGAAGTGTGTTAGTTTTTGTAGAGAATG--ATGATATTTT-TCCAAACTTGGTAACTT 2203
Query 2400 ATGACGATTGATGATatttctgacatttttagattttgctttttttgacaccaatcttat 2459
||||||||||||||| |||||||||||| |||||||| || |||| |||||||||||||
Sbjct 2204 ATGACGATTGATGATGTTTCTGACATTTCTAGATTTT--TTATTTTAACACCAATCTTAT 2261
Query 2460 tt-ccaaattttttt 2473
|| |||| |||||||
Sbjct 2262 TTTCCAA-TTTTTTT 2275
> Ahg905521 jgi|Araly1|905521|Al_scaffold_0003_2649
Length=324
Score = 339 bits (183), Expect = 8e-92
Identities = 193/198 (97%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1994 GCTTATGAGCTTTTCGAAAAGGAAGGGAACCGACCAATCATGATCGATGAACTCGCTTCG 2053
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 127 GCTTATGAGCTTTTCGAAAAGGAAGGAAACCGACCCATCATGATCGATGAACTCGCTTCG 186
Query 2054 GAACTTGGTCTTGGCCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGACAT 2113
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 187 GAACTTGGTCTTGGTCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGGCAT 246
Query 2114 ACCGATGGGAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC 2173
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACCGATGGAAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC 306
Query 2174 ACGATCAAAGCTCATTAG 2191
||||||||||||||||||
Sbjct 307 ACGATCAAAGCTCATTAG 324
> Ahg905516 jgi|Araly1|905516|Al_scaffold_0003_2644
Length=324
Score = 339 bits (183), Expect = 8e-92
Identities = 193/198 (97%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1994 GCTTATGAGCTTTTCGAAAAGGAAGGGAACCGACCAATCATGATCGATGAACTCGCTTCG 2053
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 127 GCTTATGAGCTTTTCGAAAAGGAAGGAAACCGACCCATCATGATCGATGAACTCGCTTCG 186
Query 2054 GAACTTGGTCTTGGCCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGACAT 2113
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 187 GAACTTGGTCTTGGTCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGGCAT 246
Query 2114 ACCGATGGGAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC 2173
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACCGATGGAAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC 306
Query 2174 ACGATCAAAGCTCATTAG 2191
||||||||||||||||||
Sbjct 307 ACGATCAAAGCTCATTAG 324
> Ahg905526 jgi|Araly1|905526|Al_scaffold_0003_2654
Length=324
Score = 333 bits (180), Expect = 4e-90
Identities = 192/198 (97%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1994 GCTTATGAGCTTTTCGAAAAGGAAGGGAACCGACCAATCATGATCGATGAACTCGCTTCG 2053
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 127 GCTTATGAGCTTTTCGAAAAGGAAGGAAACCGACCCATCATGATCGATGAACTCGCTTCG 186
Query 2054 GAACTTGGTCTTGGCCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGACAT 2113
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 187 GAACTTGGTCTTGGTCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGGCAT 246
Query 2114 ACCGATGGGAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC 2173
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACCGATGAAAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC 306
Query 2174 ACGATCAAAGCTCATTAG 2191
||||||||||||||||||
Sbjct 307 ACGATCAAAGCTCATTAG 324
> Ahg905519 jgi|Araly1|905519|Al_scaffold_0003_2647
Length=345
Score = 254 bits (137), Expect = 3e-66
Identities = 210/241 (87%), Gaps = 22/241 (9%)
Strand=Plus/Plus
Query 1994 GCTTATGAGCTTTTCGAAAAGGAAGGGAACCGACCAATCATGATCGATGAACTCGCTTCG 2053
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 127 GCTTATGAGCTTTTCGAAAAGGAAGGAAACCGACCCATCATGATCGATGAACTCGCTTCG 186
Query 2054 GAACTTGGTCTTGGCCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGACAT 2113
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 187 GAACTTGGTCTTGGTCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGGCAT 246
Query 2114 ACCGATGGGAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC 2173
||||||| ||||||||||||||||||||| ||| | | | ||
Sbjct 247 ACCGATGAAAAGCTTAGCTTTCTCGGATTT---------CTA---G------C---C-GC 284
Query 2174 ACGATCAAAGCTCATTAGAAGGGTTTTGAAACTTTGAATGATATGTATGAAATTTGTCTG 2233
|||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 285 ACGATCAAAGCTCATTAGAAGGGTTTTGAAACATGGAATGATATGTATGAGATTTGTCTG 344
Query 2234 A 2234
|
Sbjct 345 A 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93359190495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5