BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50550.1 Length=592 Score E Sequences producing significant alignments: (Bits) Value Ahg485402 jgi|Araly1|485402|fgenesh2_kg.5__1394__AT3G50550.1 468 2e-131 > Ahg485402 jgi|Araly1|485402|fgenesh2_kg.5__1394__AT3G50550.1 Length=440 Score = 468 bits (253), Expect = 2e-131 Identities = 362/410 (88%), Gaps = 25/410 (6%) Strand=Plus/Plus Query 6 tttttttGAAATTTCCATGGCGGACGAAAAGGAGATCGTCGATATTTATAGCTCAGATGA 65 ||||||||||||||||||||||||||| | ||||||| ||| ||| |||||||| ||||| Sbjct 1 TTTTTTTGAAATTTCCATGGCGGACGAGATGGAGATCATCGTTATATATAGCTCGGATGA 60 Query 66 GGAATACGACGAAGACgatgatgatgatgatgatACCGATGGCGAGAGTAGCGACGAAGA 125 || | | ||||| | || | |||||||||| |||||||||||||| | | || Sbjct 61 GG---A--A-GAAGA--A-GA--A-GATGATGATATCGATGGCGAGAGTA--G-C---GA 102 Query 126 CGATGAAGAAGAAGATCGGAATCTGAGTGGAGATGATAGCGAATCAAGCGAAgatgatta 185 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103 C---GAAGAAGAAGATCGGAATCTGAGTGGAGATGATAGCGAATCAAGCGAAGATGATTA 159 Query 186 cactgattcgaattcggattctgatgacgacgatgaagaagatgatgatgatgaggagga 245 ||||||||||||||||||||||||||||| || ||||| |||||||||||||| || || Sbjct 160 TACTGATTCGAATTCGGATTCTGATGACGATGAAGAAGATGATGATGATGATGATGATGA 219 Query 246 ggaa-gaagaagaagaCTCCCTTGTTGATAAAGTCACTCGTCTACTCAAAGGGAAACAAG 304 || ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 220 T-AACGAAGACGAAGACTCTCTTGTAGATAAAGTCACTCGTCTACTCAAAGGGAAACAAG 278 Query 305 ATTGACTCGTACACATTTCTTAGCTGAGAAGCtttttttAAGGA-TAAAAGGTAGGAGCA 363 |||||||| || |||||||||||||||||||||||||| |||| |||||| |||||||| Sbjct 279 ATTGACTCATAAACATTTCTTAGCTGAGAAGCTTTTTT-AAGGGGTAAAAGATAGGAGCA 337 Query 364 TGAAAGAAGCAGTTTATCAAAGATCATCTATTGCTAAGGTAAATCATATA 413 | |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 338 TTAAAGAAGCAGTTTATCAAAGATCATCTATTGCAAAGGTAAATCATATA 387 Score = 87.9 bits (47), Expect = 7e-17 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 455 ATTTGTTAATGCAATGGAGATTATTGTTCTCTTCACACTTATATAAGTTTCTT 507 ||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 387 ATTTGTTAATGAAAGGGAGATTATTGTTCTCTTCACACTTATATAAGTTTCTT 439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21672374552 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5