BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50550.1

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485402 jgi|Araly1|485402|fgenesh2_kg.5__1394__AT3G50550.1         468    2e-131


> Ahg485402 jgi|Araly1|485402|fgenesh2_kg.5__1394__AT3G50550.1
Length=440

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 362/410 (88%), Gaps = 25/410 (6%)
 Strand=Plus/Plus

Query  6    tttttttGAAATTTCCATGGCGGACGAAAAGGAGATCGTCGATATTTATAGCTCAGATGA  65
            ||||||||||||||||||||||||||| | ||||||| ||| ||| |||||||| |||||
Sbjct  1    TTTTTTTGAAATTTCCATGGCGGACGAGATGGAGATCATCGTTATATATAGCTCGGATGA  60

Query  66   GGAATACGACGAAGACgatgatgatgatgatgatACCGATGGCGAGAGTAGCGACGAAGA  125
            ||   |  | |||||  | ||  | |||||||||| ||||||||||||||  | |   ||
Sbjct  61   GG---A--A-GAAGA--A-GA--A-GATGATGATATCGATGGCGAGAGTA--G-C---GA  102

Query  126  CGATGAAGAAGAAGATCGGAATCTGAGTGGAGATGATAGCGAATCAAGCGAAgatgatta  185
            |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  103  C---GAAGAAGAAGATCGGAATCTGAGTGGAGATGATAGCGAATCAAGCGAAGATGATTA  159

Query  186  cactgattcgaattcggattctgatgacgacgatgaagaagatgatgatgatgaggagga  245
             ||||||||||||||||||||||||||||| || ||||| |||||||||||||| || ||
Sbjct  160  TACTGATTCGAATTCGGATTCTGATGACGATGAAGAAGATGATGATGATGATGATGATGA  219

Query  246  ggaa-gaagaagaagaCTCCCTTGTTGATAAAGTCACTCGTCTACTCAAAGGGAAACAAG  304
              || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  220  T-AACGAAGACGAAGACTCTCTTGTAGATAAAGTCACTCGTCTACTCAAAGGGAAACAAG  278

Query  305  ATTGACTCGTACACATTTCTTAGCTGAGAAGCtttttttAAGGA-TAAAAGGTAGGAGCA  363
            |||||||| || |||||||||||||||||||||||||| ||||  |||||| ||||||||
Sbjct  279  ATTGACTCATAAACATTTCTTAGCTGAGAAGCTTTTTT-AAGGGGTAAAAGATAGGAGCA  337

Query  364  TGAAAGAAGCAGTTTATCAAAGATCATCTATTGCTAAGGTAAATCATATA  413
            | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  338  TTAAAGAAGCAGTTTATCAAAGATCATCTATTGCAAAGGTAAATCATATA  387


 Score = 87.9 bits (47),  Expect = 7e-17
 Identities = 51/53 (96%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  455  ATTTGTTAATGCAATGGAGATTATTGTTCTCTTCACACTTATATAAGTTTCTT  507
            ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  387  ATTTGTTAATGAAAGGGAGATTATTGTTCTCTTCACACTTATATAAGTTTCTT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21672374552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5