BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50560.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937893 jgi|Araly1|937893|scaffold_502084.1 1395 0.0
> Ahg937893 jgi|Araly1|937893|scaffold_502084.1
Length=869
Score = 1395 bits (755), Expect = 0.0
Identities = 827/861 (96%), Gaps = 8/861 (1%)
Strand=Plus/Plus
Query 162 GGAAAGATCATAAAGTATCGATGATGAGAAACGTAGGGAGTTCGAGCTCTGGCAGCAAAG 221
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1 GGAAAGATCATAAAGTATCGATGATGAGAAACGTAGGGAGTTCGAGCTCCAGCGGCAAAG 60
Query 222 GCATAGCGGCCGTAGTCGGCGTTGGTCCAAAGCTCGGTCGCTCCATCGCTCGGAAGTTTG 281
|||||||||| || || ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 61 GCATAGCGGCGGTGGTTGGCGTTGGTCCGAAGCTTGGCCGCTCCATCGCTCGGAAGTTTG 120
Query 282 CTCACGAAGGCTACACCGTCGCCATCCTCGCTCGTGATCTTGGTAGGTTATCTAGAGTAG 341
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 121 CTCACGAAGGCTACACCGTCGCCATTCTCGCTCGCGATCTTGGTAGGTTATCTAGAGTAG 180
Query 342 CAGAAGAGATAGCAAGAGAAGAGAAAGCACAAGTGTTTGCTATAAGAATTGATTGTGCAG 401
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CAGAAGAGATAGCAAGAGAAGAGAAAGCTCAAGTGTTTGCTATAAGAATTGATTGTGCAG 240
Query 402 ATCCAAGAAGTGTAAGAGAAGCCTTCGAAGGAGTATTGTCGTTAGGGTTCGTGGAGGTTT 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ATCCAAGAAGTGTAAGAGAAGCCTTCGAAGGAGTATTGTCATTAGGGTTCGTGGAGGTTT 300
Query 462 TAGTGTACAATGCTTATCA---TTC-T--TCTTACGCAAGTCACCATCCCACTTCTTTCA 515
| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 301 TGGTGTACAATGCTTATCATTCTTCTTCGTCTTACGCAAGTCACCATCCCACTTCTTTCA 360
Query 516 CCCACATTCCTTTTCAATCTTTCCAAACATCTATCTCTGTCTCTGTCTTCGCTGCATTTC 575
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 CTCACATTCCTTTTCAATCTTTCCAAACTTCTATCTCTGTCTCTGTCTTCGCTGCATTTC 420
Query 576 TTTGCGCTCAACAGGTTACTCCCGGGATGATGGAGAAAGGAAAAGGAACTATACTCTTCA 635
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTGCGCCCAACAGGTTATTCCCGGGATGATGGAGAAAGGAAAAGGAACTATACTCTTCA 480
Query 636 CCGGTTGCTCGGCGTCTTTGAATGGCATTGCTGGTTTCTCCGAACTATGCTGTGGGAAAT 695
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CCGGTTGCTCGGCGTCTTTGAATGGCATTGCTGGTTTCTCCGAGCTATGCTGTGGGAAAT 540
Query 696 TTGCGTTGAGGGCACTGTCTCAATGCTTAGCAAAAGAATATCAAGCTTTTGGAATACATG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGCGTTGAGGGCACTGTCTCAATGCTTAGCAAAAGAATATCAAGCTTTTGGAATACATG 600
Query 756 TGGCTCATGTTATCATCGACGGTGTGGTTGGACCTCCAAGAGAAACAAACATCCCTCCCC 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGCTCATGTTATCATCGACGGTGTGGTTGGACCTCCAAGAGAAACAAACATCCCTCCCC 660
Query 816 GAGGAATGGTCGCAGAGCAATCATTCAACGTAGGAGGCGAAGATGGAGAAGGAGAAGGAG 875
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGGAATGGTCGTGGACCAATCATTCAACGTAGGAGGCGAAGATGGAGAAGGAGAAGGAG 720
Query 876 AAAGCTCGGGAGTGATGGGAATGGATCCTGATGTATTGGCTCAAACTTATTGGTATCTCC 935
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 AAAGCTCGGGAGTGATGGGAATGGATCCTGATGTATTGGCTCAAACATATTGGTATCTCC 780
Query 936 ATGTTCAAGACCGGAGAGCTTGGACACATGAACTCGATATCCGACCATCAAACCCAA-AT 994
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 781 ATGTCCAAGACCGGAGAGCTTGGACCCATGAACTCGATATCCGACCATCAAACACAAGAT 840
Query 995 TTCTAGCTAGTACTTaaaaaa 1015
| |||||||||||||||||||
Sbjct 841 T-CTAGCTAGTACTTAAAAAA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5