BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50570.1
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485404 jgi|Araly1|485404|fgenesh2_kg.5__1396__AT3G50570.1 1120 0.0
> Ahg485404 jgi|Araly1|485404|fgenesh2_kg.5__1396__AT3G50570.1
Length=747
Score = 1120 bits (606), Expect = 0.0
Identities = 707/754 (94%), Gaps = 13/754 (2%)
Strand=Plus/Plus
Query 9 aaaaaaaaTCCTTTGTTTACATCGCCGTAACACCATGAAGAGCGTCATTGTCATTGTAGC 68
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 1 AAAAAAAATCCTTTGTTTACATCGCCTTAACACCATGAAGACCGTCATAATCATTGTAGC 60
Query 69 TCTCCTATGCCTCGTCTCTCTCCCAAACCCTACCGTCGGATCAACAAAGAAACCATGGCC 128
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 61 TCTCCTATGCATCGTCTCTCTTCCAAACCCTACCGTCGGATCAACAAAGAAACCGTGGCC 120
Query 129 TAAGCCGTCCGATCTAGCCAATC-ACAATAACAACTTCGGTGACTCTAAGGTTGGTTGGG 187
|||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 121 TAAGCCATCCGATCTAGCCAA-CAACAATAACAACTTCGGTGACTCTAAGGTTGGTTGGG 179
Query 188 CTTGCTCCTCCTCTTCAGACCCCAACACTCCTCCTTCACCTCCCGGCTCGTTCCCTAATA 247
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 CTTGCTCCTCCTCTTCAGACCCCAACGCTCCTCCTTCACCTCCCGGCTCGTTCCCTAATA 239
Query 248 TCCCCCAAATCCCGGGAATACCAAACATCCCGTTTCCCAACATTCCGGGAATCCCAATAC 307
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 240 TCCCCAAAATCCCGGGAATACCAAACATCCCTTTTCCAAACATTCCGGGAATCCCGATGC 299
Query 308 CTAACATCCCTGGACTCCCTAACATCCCTGGACTTCCAGGTCCTCCGTTTGAGTCTCTTC 367
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTAACATCCCGGGACTCCCTAACATCCCTGGACTTCCAGGTCCTCCGTTTGAGTCTCTTC 359
Query 368 TCGTGTCGCAATCCGGTGAGTTAGAGAAATGTTTGTCTAAAGATGGGTCGAAAACTAATG 427
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || |
Sbjct 360 TCGTGTCGCAATCAGGTGAGTTAGAGAAGTGTTTGTCCAAAGATGGGTCGAAAACGAACG 419
Query 428 AGAAATGTTTCTCGCAAATATTTTCGAGTTGGGCGGAGAATGATTTCGCATTGGACAAAG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAAATGTTTCTCGCAAATATTTTCGAGTTGGGCGGAGAATGATTTCGCATTGGACAAAG 479
Query 488 AATGTTGTGAGATCATTGTGAATATGAACAAGAGGTGTTATGGCCATCTTCACATGATGT 547
| ||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 480 AGTGTTGTGAGGTCATAGTGAATATGAACAAGAGGTGTTACGGTCATCTTCACATGATGT 539
Query 548 TTAAGAGTCATTTCTTTGCTCCTCTCCTTCAATACTCTTGTCACATCAAGCATGCCAAGA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTAAGAGTCATTTCTTTGCTCCTCTCCTTCAATACTCTTGTCACATCAAGCATGCCAAGA 599
Query 608 ACTAAGCA-AGTCTTCCACACGCAATTCGTTCCTCCatttagttttcttt--c--cttat 662
||||| || | ||| || || ||| | | ||||||||||||||| ||| | |||||
Sbjct 600 ACTAAACACA-TCTACCTCAAGCAC--C-T-CCTCCATTTAGTTTTTTTTTTCTTCTTAT 654
Query 663 ttttagttttgttagggttttgattttgttttgtccatttCTCATGGACATATCTTGATT 722
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 655 TTTTAGTTTTGTTAGGGTTTTG-TTTTGTTTTGTCCATTTCTCATGGGCGTATCTTGATT 713
Query 723 TGTTCGTCGTTTAATTAATAAAATCATAGttttt 756
|||||||||||||||||||||||| |||||||||
Sbjct 714 TGTTCGTCGTTTAATTAATAAAATTATAGTTTTT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28820925252
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5