BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50580.1
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485405 jgi|Araly1|485405|fgenesh2_kg.5__1397__AT3G50580.1 588 3e-167
> Ahg485405 jgi|Araly1|485405|fgenesh2_kg.5__1397__AT3G50580.1
Length=782
Score = 588 bits (318), Expect = 3e-167
Identities = 401/437 (92%), Gaps = 21/437 (5%)
Strand=Plus/Plus
Query 354 CCATCCAACGCCCAAGAAGTCTCCATCTCCGCCTCCAACA-C--CGTCTCTTCCACCTCC 410
||| ||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 301 CCA-CCAACACCCAAGAAGTCTCCATCTCCGCCTTCAACACCGTCGTCTCTTCCACCTCC 359
Query 411 AGCGCCCAAGAAG------TCT---CCTTCAACACCGTCTCTTCCACCTCCAACACCCAA 461
| | ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 360 AACACCCAAGAAGTCTCCATCTACACCTTCAACACCGTCTCTTCCACCTCCAACACCCAA 419
Query 462 GAAGTCTCCACCTCCGCCACCAA--G-TCATCACTCATCATCTCC-ATCAAATCCACCTC 517
|||||||||| ||| |||||||| | | |||||||||||||||| || |||||||||||
Sbjct 420 GAAGTCTCCATCTCTGCCACCAAGTGATGATCACTCATCATCTCCAAT-AAATCCACCTC 478
Query 518 ATCATCAACAGAATCCATGGGAACACATCGAGAGATGTATGATAAACATGGGACCTGTTG 577
|||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 479 ATCATCAACAGAATCCATGGGAACACATGGAGAGCTGTATGAGAAACATGGGACCTGTTG 538
Query 578 GGATGTGTCGGATGCAGATGGAAGTCAGTTTCTACACGAGGTTGTTTCA-AGTTAGTGAC 636
|||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 539 GGATGTGTCGGATGCAGATGGAGGTCAGTTTCTACACGAGGTTGTTT-AGTGTTAGTGAC 597
Query 637 TATTGTTGCAACCTTGTTGTCAACATGAAAAGTGAATGTGACGACGTCGCTTGGGGATTC 696
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 TATTGTTGCAACCTTGTTGTCAACATGGAAAGTGAATGTGACGACGTCGCTTGGGGATTC 657
Query 697 TTCAACGACCCTTTCTTTGTTCCTCTTGTTCGTTACACTTGCCATGTCACCTGCTAGTTT 756
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTCAACGATCCTTTCTTTGTTCCTCTTGTTCGTTACACTTGCCATGTCACCTGCTAGTTT 717
Query 757 Ctcttcttc-tttgttt 772
|||||||| |||||||
Sbjct 718 CTCTTCTTTATTTGTTT 734
Score = 580 bits (314), Expect = 4e-165
Identities = 394/432 (91%), Gaps = 8/432 (2%)
Strand=Plus/Plus
Query 1 ATGAAAACCTCCATCGTGCTTGTAGCGGCAGCTTTTCTTTGTCTTGTGGCTTTTCCGACC 60
||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1 ATGAAAAACTCCATGGTGCTTGTAGCGGCAGCTTTTCTTTGCCTTGCCGCTTTTCCGACC 60
Query 61 ACAACCGTCGGAAAATACTGGCCAAAAATCGAAGGATGGCCAAACCCGTCTGAAATCACT 120
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 61 ACAACCGTCGGAAAATATTGGCCAAAAATCGAAGGATGGCCAAATCCGTCTGAAATCTCT 120
Query 121 AGAAACGAACTGATGCTTTTGAACACTGGCCATAGTTTCGGCTATGGAGATTCCAAAGTC 180
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AGAAACGAACTGATGTTTTTGAACACTGGCCATAGTTTCAGCTATGGAGATTCCAAAGTC 180
Query 181 TGGAAATGTACTTATAGCAACGGATCTGCTCCTGCCATTTCTATTTCTCCATCAACGCCG 240
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 181 TGGAAATGTACTTATAGCAACGGATCTGCTCCAGCCATCTCCATTTCTCCATCAACGCCC 240
Query 241 ATTCCGTCAACTCCATCAACACCGTCTCCTCCTCCTCCAGCTCCTAAAAAGTCTCCCCCA 300
||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 TTTCCGTCGACTCCATCAAAACCGTCTCCTCCTCCTCCAGCTCCCAAAAAGTCTCCGCCG 300
Query 301 CCGCCAACGCCAAAGAAGTCTCCATCTCCGCCTTCATTAACACCGT--T-TGTTCC-CCA 356
|| ||||| || |||||||||||||||||||||||| | |||||| | | |||| ||
Sbjct 301 CCACCAACACCCAAGAAGTCTCCATCTCCGCCTTCA--A-CACCGTCGTCTCTTCCACC- 356
Query 357 TCCAACGCCCAAGAAGTCTCCATCTCCGCCTCCAACACCGTCTCTTCCACCTCCAGCGCC 416
|||||| |||||||||||||||||| | ||| ||||||||||||||||||||||| | ||
Sbjct 357 TCCAACACCCAAGAAGTCTCCATCTACACCTTCAACACCGTCTCTTCCACCTCCAACACC 416
Query 417 CAAGAAGTCTCC 428
||||||||||||
Sbjct 417 CAAGAAGTCTCC 428
Score = 69.4 bits (37), Expect = 4e-11
Identities = 45/48 (94%), Gaps = 3/48 (6%)
Strand=Plus/Plus
Query 427 CCTTCAACA-C--CGTCTCTTCCACCTCCAACACCCAAGAAGTCTCCA 471
||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 331 CCTTCAACACCGTCGTCTCTTCCACCTCCAACACCCAAGAAGTCTCCA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32938200288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5