BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50610.1
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897948 jgi|Araly1|897948|Al_scaffold_0005_1914 558 2e-158
> Ahg897948 jgi|Araly1|897948|Al_scaffold_0005_1914
Length=654
Score = 558 bits (302), Expect = 2e-158
Identities = 329/342 (96%), Gaps = 1/342 (0%)
Strand=Plus/Plus
Query 350 GAAA-GCTTCAACAAACAAACGGTCAAAATCATTTCAAAACCGGATCTACGGACGATTTT 408
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 313 GAAAGGTTTCAACAAACAAACGGTCAAAATCATTTCAAAACCGGATCTACGGACGAATTT 372
Query 409 GCACCTACTTCTCCGGGAAACAGTCCTGGGATAGGTCACAAGAAAGGGCATGCAAATGTT 468
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 373 GCACCGACTTCTCCGGGAAACAGTCCTGGGATAGGTCACAAGAAAGGGAATGCAAATGTT 432
Query 469 AAAGGGTTTAAAGATGACTTCGCACCCACGGAAGAAATACGATTGCAGAAAATGAACGGT 528
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 433 AAAGGGTTTAAGGATGACTTCGCACCCACGGAAGAAATACGATTGAAGAAAATGAACGGT 492
Query 529 CAAGATCATTTCAAAACCGGATCTACCGATGATTTCGCACCTACAACTCCAGGAAACAGT 588
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 493 AAAGATCATTTCAAATCCGGATCTACCGATGATTTCGCACCTACTACTCCAGGAAACAGT 552
Query 589 CCCGGTATGGGCCATAAGAAAGGAGATGACTTCAAACCCACGACACCAGGACATAGCCCC 648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CCCGGGATGGGCCATAAGAAAGGAGATGACTTCAAACCCACGACACCAGGACATAGCCCC 612
Query 649 GGGGTTGGTCATGCTGTCAAGAACGATGAACCTAAAGCTTAA 690
|||||||||||||||||||| ||| |||||||||||||||||
Sbjct 613 GGGGTTGGTCATGCTGTCAATAACAATGAACCTAAAGCTTAA 654
Score = 448 bits (242), Expect = 3e-125
Identities = 293/318 (92%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 1 ATGGTATTTTACCAAACACCAATCACCACTGAAGCAAGAAGCTTGAGGAAAACAAACGAC 60
||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1 ATGGTATTTGACCAAACACCAATCACCACCGAAGCAAGAAGATTGAGGAATACAAACGAC 60
Query 61 CAAGATCATTTTAAAGCTGGATTTACAGATGATTTCGTGCCCACTTCTCCAGGAAACAGT 120
||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 61 CAAGATCATTTCAAAGCTGGATCTACAGATGATTTCGCGCCTACTTCTCCAGGAAACAGT 120
Query 121 CCTGGTGTGGGACACAAAAAAGGTAATGTGAATGTTGAAGGGTTTCAAGATGACTTCAAG 180
||||| |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 CCTGGCGTGGGACACAGAAAAGGTAAGGTGAATGTAGAAGGGTTTCAAGATGACTTCAAG 180
Query 181 CCCACGGAAGGAAGAAAGTTGCTGAAAACTAACGTTCAAGATCATTTCAAAACCGGATCT 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CCCACGGAAGGAAGAAAGTTGCTGAAAACTAACGGTCAAGATCATTTCAAAACCGGATCA 240
Query 241 ACAGATGATTTTGCACCTACTTCCCCTGGACACAGTCCCGGGGTGGGACACAAGAAAGGA 300
||||| ||||| ||||| ||||| || ||||||||||||||||||||||| | ||||| |
Sbjct 241 ACAGACGATTTCGCACCCACTTCTCCAGGACACAGTCCCGGGGTGGGACATAGGAAAG-A 299
Query 301 AA-TGTCAATGTTGAAAG 317
| || ||||||||||||
Sbjct 300 CACTGCCAATGTTGAAAG 317
Score = 202 bits (109), Expect = 3e-51
Identities = 208/254 (82%), Gaps = 14/254 (6%)
Strand=Plus/Plus
Query 364 ACAAACGGTCAAAATCATTTCAAAACCGGATCTACGGACGATTTTGCACCTACTTCTCCG 423
||||||| ||| ||||||||||| | |||||||| || ||||| || |||||||||||
Sbjct 52 ACAAACGACCAAGATCATTTCAAAGCTGGATCTACAGATGATTTCGCGCCTACTTCTCCA 111
Query 424 GGAAACAGTCCTGG-GATAGGTCACAAG-AAAGGGCATGCAAATGTTA-AAGGGTTTAAA 480
|||||||||||||| | | || ||| || ||||| | | |||| || |||||||| ||
Sbjct 112 GGAAACAGTCCTGGCG-TGGGACAC-AGAAAAGGTAAGGTGAATG-TAGAAGGGTTTCAA 168
Query 481 GATGACTTCGCA-CCCACGGAA-GAA-ATACGATTGCAGAAAA-TGAACGGTCAAGATCA 536
||||||||| | ||||||||| ||| | | | |||| ||||| | ||||||||||||||
Sbjct 169 GATGACTTC-AAGCCCACGGAAGGAAGA-AAG-TTGCTGAAAACT-AACGGTCAAGATCA 224
Query 537 TTTCAAAACCGGATCTACCGATGATTTCGCACCTACAACTCCAGGAAACAGTCCCGGTAT 596
||||||||||||||| || || ||||||||||| || |||||||| |||||||||| |
Sbjct 225 TTTCAAAACCGGATCAACAGACGATTTCGCACCCACTTCTCCAGGACACAGTCCCGGGGT 284
Query 597 GGGCCATAAGAAAG 610
||| |||| |||||
Sbjct 285 GGGACATAGGAAAG 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25351739805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5