BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50620.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485408 jgi|Araly1|485408|fgenesh2_kg.5__1400__AT3G50620.1 2023 0.0
> Ahg485408 jgi|Araly1|485408|fgenesh2_kg.5__1400__AT3G50620.1
Length=1366
Score = 2023 bits (1095), Expect = 0.0
Identities = 1299/1391 (93%), Gaps = 40/1391 (3%)
Strand=Plus/Plus
Query 43 CTTCTTCTTCTTCTTTAGATTCTCTGTAGCTTGAAGTGGATTCATGAATCTGTAATCTCG 102
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 CTTCTTCTTCTTCTTTAGATTCTCTGTAGCTTGAAGTGGATTCATTAATCTATAATCTCG 60
Query 103 TCTCTGTATCTAAAAAGCTTCTGCTTTTAACATTATCTCTGTTTCATAAGCTTCTAGAAG 162
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 61 TCTCTGTATCT-AAAAGCTTCTGCTTTT-ACATTATCTCTGTTTCATAAGCTTCTACAAG 118
Query 163 CTTCAATGGCGGAGTATATCTGTTTATTCGGCAAGGACAGTGCAGCGATTGTTATAAAGC 222
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 CTTCAATGGCGGAGTATATCTGTTTATTCGGCAAGGATAGTGCAGCGATTGTTATAAAGC 178
Query 223 AACCAAAGAAATCACCATTATTCTTAAGGATGATTGTTTTAGTGTTTGCTATGGTTTGTG 282
||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 179 AACCAAAGAAATCACCATTGTTCTTAAGGATGATTGTTTTGGTGGTTGCTATGGTTTGTG 238
Query 283 GTCTCTACATTTGCGCTGTTTGCTTAAAACAGTTAAGTAATGTCAGCTTCCAAACCTCCC 342
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 239 GTCTCTACATTTGCTCTGTTTGCTTAAAACAGTTAAGTAATGTCAGCTTCCAAAGCTCAC 298
Query 343 AACTTGTCCAAACTAGTCCTATTGATTCTCACTCGCTACGCTTTGTTACTCGGATTCATT 402
||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 299 AACTTGTCCAAACTACTCCTTTTGATTCTCACTCATTACGCTTTGTTACTCGGATTCATT 358
Query 403 ATCCAAAGCCTCAGACTTTTAATAGAGCTGAATGTGGACATAATCCGGTGAGGTACTTTG 462
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACCCAAAGCCTCAGACTTTTAATAGAGCTGAATGTGGACATAATCCGGTGAGGTACTTTG 418
Query 463 CGATATTGTCGATGCAGAGATCAGGAAGCGGTTGGTTCGAAACATTGTTGAATAGTCATA 522
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGATACTGTCGATGCAGAGATCAGGAAGCGGTTGGTTCGAAACATTGTTGAATAGTCATA 478
Query 523 ACAATGTGAGTTCTAATGGAGAGATTTTCTCTGTTTTGGATCGAAGGAAAAACATTTCTT 582
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 GCAATGTGAGTTCTAATGGAGAGATTTTCTCGGTTTTGGATCGAAGGAAAAACATTTCTT 538
Query 583 CAATCATTCAGACTCTTGATAGAGTTTATAATCTTGATTGGTTTACGAGTGCTTCAAAGA 642
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 539 CAATCATTCAGACTCTTGATAGAGTTTATAATCTTGATTGGTTCACAAGTGCTTCAAAGA 598
Query 643 ACGAATGTTCTGCTGCTATTGGTTTCAAATGGATGCTTAACCAGGGTTTGTTGGAGAACC 702
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 599 ACGAATGCTCTGCTGCTATTGGATTCAAATGGATGCTTAACCAGGGTTTGTTGGACAACC 658
Query 703 ATAAAGACATAGTAGAGTACTTTAACCGAAGAGGCGTCTCTG-CGATATTTCTGTTTAGA 761
||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 659 ATAAAGAAATAGTAGATTACTTTAACCGAAGAGGCGTCTC-GACGATATTTCTGTTTAGA 717
Query 762 AGGAATCCTTTAAGAAGAATGGTTTCTGTGTTGGCAAATTCTTATGACCGTTATGCTAAG 821
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 AGGAATCCTCTAAGAAGAATGGTTTCTGTGTTGGCAAATTCGTATGACCGTTATGCTAAG 777
Query 822 CTTTTGAATGGAACTCATAAGTCTCATGTTCATTCTCCTGCAGAGGCAGATGCACTTTCT 881
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTTTGAATGGAACTCACAAGTCTCATGTTCATTCTCCTGCAGAGGCAGATGCACTTTCT 837
Query 882 AGATATAAGCCGGTAATCAACTCGACATCGTTGATCCACGATTTACAAGAAACAGAGAAT 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGATATAAGCCGGTAATCAACTCGACATCGTTGATCCACGATTTACAAGAAACAGAGAAC 897
Query 942 TCAGCTGCAAAGGCTTTAGAATATTTCAATACCACTCGTCATATTGTTGTCTTCTACGAA 1001
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 898 TCAGCTGCAAAGGCTTTAGAATATTTCAATACAACACGTCATATCGTTGTCTTCTACGAA 957
Query 1002 GATCTCATAACAAATCAAACGACATTGAAACAAGTTCAAGAGTTTTTGAACATTCCAGTG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GATCTCATAACAAATCAAACGACATTGAAACAAGTTCAAGAGTTTTTGAACATTCCAGTG 1017
Query 1062 AAGGATTTGTCAAGCAGACAGGTGAAAATACATAGAGGAGATTTGTCAGATCATATAAAG 1121
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 AAGGATTTGTCAAGCAGACAGGTGAAAATACACAGAGGAGATTTGTCAGATCATATAAAG 1077
Query 1122 AATTGGGAAGATATAAACAAGACTTTGAATGGGACTGAGTACGAGAAATTTCTACGAGCT 1181
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1078 AACTGGGAAGATATAAACAAGACATTGAATGGGACCGAGTACGAGAAATTTCTACGAGCA 1137
Query 1182 GATTATTAGTGTTTTAAACTATCTTAGTGaaaaaaaGGTCTT-CTAAGTTTGAAGCTT-T 1239
||||||||||||||| ||||||||||| || ||| ||| || | |||| | ||| |
Sbjct 1138 GATTATTAGTGTTTTTAACTATCTTAGAGACTAAAGGGT-TTGCAAAGTGTCTT-CTTGT 1195
Query 1240 TCTACTTCTTAGGTTCTTCGGCTCAACTACTTGTTGATCTTTTCCTTTATCATCTTCTAT 1299
||||||||||||||||||||||||||||||||||||||||| |||||| | || ||
Sbjct 1196 TCTACTTCTTAGGTTCTTCGGCTCAACTACTTGTTGATCTTCTCCTTT--C-TC----AT 1248
Query 1300 TTTTGTTATCTTTTTAGCACATAAATGATTTTGTTTTCTTCT-C--ATTGGATGTATAGG 1356
|||||||| ||| |||||||||||||||||||| | ||||| ||||||||
Sbjct 1249 ---------CTTTTTAGAACAGAAATGATTTTGTTTTCTTCTTCTCATTGGTTGTATAGG 1299
Query 1357 AGGAACTGGAAAACTGTATT-GCTTATTTTTAGAGGTT--T---GTT-TT--GTGATTGT 1407
| | || ||||| |||||| ||||||||||||||||| | ||| || ||||||||
Sbjct 1300 A--A-CTCGAAAA-TGTATTTGCTTATTTTTAGAGGTTGATTAAGTTGTTTTGTGATTGT 1355
Query 1408 TGATTTGAGTT 1418
|||||||||||
Sbjct 1356 TGATTTGAGTT 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5