BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50640.1

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg348171 jgi|Araly1|348171|fgenesh1_pg.C_scaffold_5001563           771    0.0  


> Ahg348171 jgi|Araly1|348171|fgenesh1_pg.C_scaffold_5001563
Length=501

 Score =  771 bits (417),  Expect = 0.0
 Identities = 475/503 (94%), Gaps = 4/503 (1%)
 Strand=Plus/Plus

Query  25   ATGGCACGCTTAGAAATGCACAACTCCATGAATGGTGCTGCTAGAATCTCTTTTTCTAAC  84
            |||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct  1    ATGGCACGTTTAGAAATGCACAACTCCATGAATGGTGCTGCAAGAATCTCATTCTCTAAC  60

Query  85   GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGAGCAACAACATCAACTCGAGA  144
            |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct  61   GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGACCAACAACATGAACTCAAGA  120

Query  145  AGCTCTTTCTCCATGCCCTCAGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT  204
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGCTCTTTCTCCATGCCCTCTGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT  180

Query  205  CCCGCCGATGAAATCTTCCTCAAAGGAAAGATTTTACCTTTTAAGGAGACCAGTCACGTC  264
            ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct  181  CCCGCCGATGAAATCTTTCTCAAAGGAAAGATTTTACCTCTCAAGGAGACCAGTCACGTC  240

Query  265  CATAGGACCTTAGGAGAAGAGCTTCTTACTGAAGAGGAGGGTTCTATGGTCGATGGTAAC  324
            |||||||||||||||||||||||||||| |||||| ||||||||| | || ||||| || 
Sbjct  241  CATAGGACCTTAGGAGAAGAGCTTCTTATTGAAGAAGAGGGTTCTGTTGTTGATGGCAAG  300

Query  325  A-CTTTCTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG  383
            | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AACTT-CTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG  359

Query  384  GAGGGAGCTTTTGGGACTTAAGAGGACCCAT-GTTAGATCTAAGAAGACTGATAAAGTCA  442
            ||| ||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct  360  GAGAGAGCTATTGGGCCTTAAGAGGACCCATTGT-AGATCTAAGAAGACTGATAAAGTCA  418

Query  443  ATGAGGAAGTGTTAAGTCAAGATCACAAAATAATCTCAGGAAATGTTGCAACGAGGGAGT  502
            ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  419  ATGAGGAAGTGTTAACTCAAGATCACAAAATAATCTCAGGAAGTGTTGCGACGAGGGAGT  478

Query  503  GTCAAGTTGCAGATACAAGATGA  525
            |||||||||||||||||||||||
Sbjct  479  GTCAAGTTGCAGATACAAGATGA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27600991908


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5