BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50640.1 Length=749 Score E Sequences producing significant alignments: (Bits) Value Ahg348171 jgi|Araly1|348171|fgenesh1_pg.C_scaffold_5001563 771 0.0 > Ahg348171 jgi|Araly1|348171|fgenesh1_pg.C_scaffold_5001563 Length=501 Score = 771 bits (417), Expect = 0.0 Identities = 475/503 (94%), Gaps = 4/503 (1%) Strand=Plus/Plus Query 25 ATGGCACGCTTAGAAATGCACAACTCCATGAATGGTGCTGCTAGAATCTCTTTTTCTAAC 84 |||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 1 ATGGCACGTTTAGAAATGCACAACTCCATGAATGGTGCTGCAAGAATCTCATTCTCTAAC 60 Query 85 GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGAGCAACAACATCAACTCGAGA 144 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 61 GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGACCAACAACATGAACTCAAGA 120 Query 145 AGCTCTTTCTCCATGCCCTCAGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT 204 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCTCTTTCTCCATGCCCTCTGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT 180 Query 205 CCCGCCGATGAAATCTTCCTCAAAGGAAAGATTTTACCTTTTAAGGAGACCAGTCACGTC 264 ||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| Sbjct 181 CCCGCCGATGAAATCTTTCTCAAAGGAAAGATTTTACCTCTCAAGGAGACCAGTCACGTC 240 Query 265 CATAGGACCTTAGGAGAAGAGCTTCTTACTGAAGAGGAGGGTTCTATGGTCGATGGTAAC 324 |||||||||||||||||||||||||||| |||||| ||||||||| | || ||||| || Sbjct 241 CATAGGACCTTAGGAGAAGAGCTTCTTATTGAAGAAGAGGGTTCTGTTGTTGATGGCAAG 300 Query 325 A-CTTTCTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG 383 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AACTT-CTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG 359 Query 384 GAGGGAGCTTTTGGGACTTAAGAGGACCCAT-GTTAGATCTAAGAAGACTGATAAAGTCA 442 ||| ||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||| Sbjct 360 GAGAGAGCTATTGGGCCTTAAGAGGACCCATTGT-AGATCTAAGAAGACTGATAAAGTCA 418 Query 443 ATGAGGAAGTGTTAAGTCAAGATCACAAAATAATCTCAGGAAATGTTGCAACGAGGGAGT 502 ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| Sbjct 419 ATGAGGAAGTGTTAACTCAAGATCACAAAATAATCTCAGGAAGTGTTGCGACGAGGGAGT 478 Query 503 GTCAAGTTGCAGATACAAGATGA 525 ||||||||||||||||||||||| Sbjct 479 GTCAAGTTGCAGATACAAGATGA 501 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27600991908 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5