BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50650.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485412 jgi|Araly1|485412|fgenesh2_kg.5__1404__AT3G50650.1 2237 0.0
> Ahg485412 jgi|Araly1|485412|fgenesh2_kg.5__1404__AT3G50650.1
Length=1578
Score = 2237 bits (1211), Expect = 0.0
Identities = 1490/1617 (92%), Gaps = 50/1617 (3%)
Strand=Plus/Plus
Query 348 GCCGTCGCTTCCGAGGAGTTTGACTCCGACGAGTGGATGGAGAGTTTGATCAACGGTGGA 407
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCGTCGCTTCCGAAGAGTTTGACTCCGACGAGTGGATGGAGAGTTTGATCAACGGTGGG 60
Query 408 GATGCGTCACAAACCAATCCAGACTTCCCAATCTACGGCCATGATCCATTCGTCTCATTC 467
||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GATTCTTTGCAAACCAATCCAGACTTCCCAATCTACGGCCATGATCCATTCGTCTCGTTC 120
Query 468 CCGAGTCGACTCAGTGCTCCTTCATATCTCAACCGAGTCAACAAAG-ATGACTCAGCGAG 526
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 121 CCGAGTCGACTCAGTGCTCCTTCAAATCTCAACCGAGTCAAC-AAGTATGACTCAGCGAG 179
Query 527 TCAACAACTCCCTCCGCCACCAG-CTTCCACCGCTATATGGTCTCCATCTCCGCCATCAC 585
||| |||||| ||| |||||| | | |||||| |||||||| ||||||||||||||||||
Sbjct 180 TCATCAACTCTCTCAGCCACC-GACCTCCACCACTATATGGACTCCATCTCCGCCATCAC 238
Query 586 CACAACATCCTCCTCCTCCCCCGCCGCAGCCGGATTTTGATCTAAACCAGCCGATTTTTA 645
||||||| || |||||| || ||||||||||||||||| |||||||| |||||||| |
Sbjct 239 CACAACA---TCATCCTCCACCTCCGCAGCCGGATTTTGACCTAAACCAACCGATTTTAA 295
Query 646 AAGCTATCCACGATTATGCACGTAAACCGGAAACTAAACCGGACACACTAATTCGGATCA 705
||||||||||||| |||||||||||||||| | | ||| ||||||||||||
Sbjct 296 AAGCTATCCACGAATATGCACGTAAACCGG-------A----A-ACATTAATTCGGATCA 343
Query 706 AAGAATCCGTGTCCGAA-TCAGGCGACCCGATACAACGAGTCGGGTATTACTTCGCAGAA 764
|||||||||| |||||| || || |||||||| | |||||||||||||||||| ||||
Sbjct 344 AAGAATCCGTATCCGAATTC-GGTAACCCGATAGAGCGAGTCGGGTATTACTTCTTAGAA 402
Query 765 GCTCTGTCTCATAAAGAAACAGAGTCTCCGTCGTCATCG---TCGTCGTCAT--CC-CTA 818
||||||||||||| ||||||||||||||||||||||||| |||||||| | || |||
Sbjct 403 GCTCTGTCTCATAGAGAAACAGAGTCTCCGTCGTCATCGTCTTCGTCGTCGTCGCCGCTA 462
Query 819 GAAGATTTCATTCTCTCATACAAAACCTTAAACGACGCATGTCCATATTCAAAGTTCGCT 878
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 463 GAAGACTTCATACTCTCATACAAAACCTTAAACGACGCATGTCCATACTCAAAGTTCGCT 522
Query 879 CATTTAACAGCGAATCAAGCAATTCTCGAAGCTACGAATCAATCAAACAACATTCACATA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CATTTAACAGCGAATCAAGCAATTCTCGAAGCTACGAATCAATCAAACAACATTCACATA 582
Query 939 GTCGATTTCGGGATTTTTCAAGGTATTCAATGGTCTGCTCTGTTACAAGCTTTAGCGACC 998
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 583 GTCGATTTCGGGATTTTTCAAGGTATTCAGTGGTCTGCTCTGTTACAAGCTTTAGCGACC 642
Query 999 CGTTCTTCTGGTAAACCCACCCGGATCCGGATTTCGGGTATACCCGCTCCGTCTCTAGGA 1058
|| ||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 643 CGGTCTTCAGGAAAACCCACCCGGATCCGGATTTCGGGTATTCCCGCTCCGTCTTTAGGA 702
Query 1059 GACTCACCGGGACCGTCTCTGATCGCTACGGGAAACCGTCTCCGTGATTTCGCGGCGATT 1118
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 703 GACTCACCGGGACCGTCTCTGATCGCTACAGGTAACCGTCTCCGTGATTTCGCGGCGATT 762
Query 1119 TTGGATCTCAATTTCGAGTTTTATCCGGTTCTGACTCCGATTCAATTACTAAACGGGTCA 1178
||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 763 TTGGATCTCAATTTCGAGTTTTATCCGATTCTGACGCCGATTCAGTTACTAAACGGGTCG 822
Query 1179 AGTTTTCGGGTTGACCCGGATGAGGTTTTGGTTGTGAATTTTATGCTTGAGCTTTATAAG 1238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGTTTTCGGGTCGACCCGGATGAGGTTTTGGTTGTGAATTTTATGCTTGAGCTTTATAAG 882
Query 1239 CTTCTAGATGAAACAGCGACGACTGTTGGTACGGCGCTCCGGTTAGCTAGATCGTTAAAC 1298
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 883 CTTCTTGATGAAACGGCGACGACGGTTGGTACGGCGCTCCGGTTAGCTAGATCGTTAAAC 942
Query 1299 CCGAGGATTGTGACGCTTGGAGAATACGAAGTCAGTTTAAACCGGGTTGAATTTGCTA-A 1357
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | |
Sbjct 943 CCGAGGATTGTGACGCTTGGTGAATACGAAGTCAGTTTAAACCGGGTTGGATTTGC-ATA 1001
Query 1358 CCGGGTTAAGAACTCTCTCCGGTTTTATTCCGCGGTTTTTGAATCGCTTGAACCGAATTT 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CCGGGTTAAGAACTCTCTCCGGTTTTATTCCGCGGTTTTTGAATCGCTTGAACCGAATTT 1061
Query 1418 GGATCGAGATTCGAAAGAAAGGCTGAGAGTGGAGAGAGTGTTGTTCGGTAGGAGGATTA- 1476
||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 1062 GGAGCGAGATTCGAAAGAAAGGCTGAGAGTGGAAAGAGTCTTGTTCGGTAGGAGGA-TAT 1120
Query 1477 TGGATTTGGTCCGATCAGATGATGATAATAATAAACCGGGAACCCGGTTTGGGTTAATGG 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1121 TGGATTTGGTCCGATCAGATGATGATAATAATAAACCGGGAACCCGGTTTGGGCTAATGG 1180
Query 1537 AGGAGAAAGAACAATGGAGAGTGTTGATGGAGAAAGCTGGATTTGAGCCGGTTAAACCGA 1596
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1181 AGGAGAAAGAACAATGGAGAGTGTTGATGGAGAAAGCCGGTTTTGAACCGGTTAAACCGA 1240
Query 1597 GTAATTACGCGGTTAGCCAAGCGAAGCTGCTACTATGGAACTACAATTATAGTACATTGT 1656
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GCAATTACGCGGTTAGCCAAGCGAAGCTGCTACTATGGAACTACAATTATAGTACATTGT 1300
Query 1657 ATTCACTTGTTGAATCGGAGCCAGGTTTCATCTCCTTGGCTTGGAACAATGTGCCTCTCC 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 ATTCACTTGTTGAATCGGAGCCAGGTTTCATCTCCTTGGCTTGGAACAATGTGCCTCTCC 1360
Query 1717 TCACCGTTTCCTCTTGGCGTTGACTACTTGGTCCGATAAGTTAATCTAGTATTTTGAGTT 1776
|||| |||||||||||||||||||||| |||| |||||||||||||||| ||| |||||
Sbjct 1361 TCACAGTTTCCTCTTGGCGTTGACTACATGGTT-GATAAGTTAATCTAGTCTTT-GAGTT 1418
Query 1777 AGCTTTTAGAATTGAATTGTTTGGGGTTAGATTTGGATGTTTAATTAGTCTCTAGCCTAT 1836
|||||||||||||||||| ||||||| || |||||||| | |||||||||||| | |
Sbjct 1419 AGCTTTTAGAATTGAATTATTTGGGGATATATTTGGATCTATAATTAGTCTCT----T-T 1473
Query 1837 TCTCTTACTCTTTTTTATCTAGTGCTTGGAGTGATGATGGTTTGTCGTTTATGTTCATTT 1896
| | ||| ||| | | | ||||||||||| |||||||||| ||| |||||||||
Sbjct 1474 T-T-TTA-TCT-----AG-T--T-CTTGGAGTGATAATGGTTTGTCCTTTTTGTTCATTT 1521
Query 1897 GTAATATATATTGTATGTAACATTTGACTAGATTTCTTTGGTATAAACGAAAGAAGC 1953
||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1522 GTAATATATATTGGATGTAACATTTGACTAGATTTATTTGGTGCAAACGAAAGAAGC 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5