BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50660.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937906 jgi|Araly1|937906|scaffold_502097.1 2710 0.0
> Ahg937906 jgi|Araly1|937906|scaffold_502097.1
Length=1596
Score = 2710 bits (1467), Expect = 0.0
Identities = 1556/1599 (97%), Gaps = 5/1599 (0%)
Strand=Plus/Plus
Query 58 agagagagaAACTAGCTCCATGTTCGAAACAGAGCATCATActctcttacctcttcttct 117
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 AGAGAGAGAAACTAGCTCCATGTTCGAAACAGAGCATCATACTCTCTTGCCTCTTCTTCT 61
Query 118 tctcccatcgcttttgtctcttcttctcttcttgattctcttGAAGAGAAGAAATAGAAA 177
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 62 TCTCCCATCGCTTTTGTCTCTTCTTCTCTTCTTGATTCTCTTGAAAAGAAGAAGTAGAAG 121
Query 178 AACCAGATTCAATCTACCTCCGGGTAAATCCGGTTGGCCATTTCTTGGTGAAACCATCGG 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AACCAGATTCAATCTCCCTCCGGGTAAATCCGGTTGGCCATTTCTTGGTGAAACCATCGG 181
Query 238 TTATCTTAAACCGTACACCGCCACAACACTCGGTGACTTCATGCAACAACATGTCTCCAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTATCTTAAACCGTACACCGCCACAACACTCGGTGACTTCATGCAACAACATGTCTCCAA 241
Query 298 GTATGGTAAGATATATAGATCGAACTTGTTTGGAGAACCAACGATCGTATCAGCTGATGC 357
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 242 GTATGGGAAGATATATAGATCGAATTTGTTTGGAGAACCAACGATTGTATCAGCTGATGC 301
Query 358 TGGACTTAATAGATTCATATTACAAAACGAAGGAAGGCTCTTTGAATGTAGTTATCCTAG 417
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 302 TGGACTTAATAGATTCATATTACAAAACGAAGGGAGGCTTTTTGAATGTAGTTATCCTCG 361
Query 418 AAGTATAGGTGGGATTCTTGGGAAATGGTCGATGCTTGTTCTTGTTGGTGACATGCATAG 477
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 AAGTATCGGTGGGATTCTTGGGAAATGGTCGATGCTTGTTCTTGTTGGAGACATGCATAG 421
Query 478 AGATATGAGAAGTATCTCGCTTAACTTCTTAAGTCACGCACGTCTTAGAACTATTCTACT 537
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 422 AGATATGAGAAGTATCTCGCTTAACTTTTTAAGTCACGCTCGTCTTAGAACCATTCTACT 481
Query 538 TAAAGATGTTGAGAGACATACTTTGTTTGTTCTTGATTCTTGGCAACAAAACTCTATTTT 597
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 482 TAAAGATGTTGAGAGACATACTTTGTTTGTTCTTGATTCTTGGAAACAACACTCTGTTTT 541
Query 598 CTCTGCTCAAGACGAGGCCAAAAAGTTTACGTTTAATCTAATGGCGAAGCATATAATGAG 657
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 542 CTCTGCTCAAGATGAGGCCAAAAAGTTTACGTTTAATCTAATGGCGAAACATATAATGAG 601
Query 658 TATGGATCCTGGAGAAGAAGAAACAGAGCAATTAAAGAAAGAGTATGTAACTTTCATGAA 717
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TATGGATCCTGGAGAAGAGGAAACAGAGCAATTAAAGAAAGAGTATGTAACTTTCATGAA 661
Query 718 AGGAGTTGTCTCTGCTCCTCTAAATCTACCAGGAACTGCTTATCATAAAGCTCTTCAGTC 777
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 662 AGGTGTTGTCTCTGCTCCTCTCAATCTACCAGGAACTGCTTATCATAAAGCCCTTCAGTC 721
Query 778 ACGAGCAACGATATTGAAGTTCATTgagaggaaaatggaagagagaaaattggatatcaa 837
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 722 ACGAGCAACGATATTGAAGTTCATTGAGAGGAAAATGGAAGAGAGAAAATTAGATATTAA 781
Query 838 ggaagaagatcaagaagaagaagaagtgaaaacagaggatgaagcagagatgagtaagag 897
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GGAAGAAGATC---AAGAAGAAGAAGTGAAAACAGAGGATGAAGCAGAGATGAGTAAGAG 838
Query 898 tgatCATGTTAGGAAACAAAGAACAGACGATGATCTTTTGGGATGGGTTTTGAAACATTC 957
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGATCATGTGAGGAAACAAAGAACAGACGATGATCTTTTGGGATGGGTTTTGAAACATTC 898
Query 958 GAATTTATCGACGGAGCAAATTCTCGATCTCATTCTTAGTTTGTTATTTGCCGGACATGA 1017
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 899 GAATTTATCGACGGAGCAAATTCTCGATCTCATTCTTAGTTTGTTATTCGCCGGACATGA 958
Query 1018 GACTTCTTCTGTAGCCATTGCTCTCGCTATCTTCTTCTTGCAAGCTTGCCCTAAAGCCGT 1077
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 GACTTCTTCTGTCGCCATTGCTCTTGCTATCTTCTTCTTGCAAGCTTGCCCTAAAGCCGT 1018
Query 1078 TGAAGAGCTTAGGGAAGAGCATCTTGAGATCGCGAGGGCCAAGAAGGAACTAGGAGAGTC 1137
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1019 TGAAGAGCTTAGGGAAGAGCATCTTGAGATCGCTAGAGCCAAGAAGGAACTAGGAGAGTC 1078
Query 1138 AGAATTAAATTGGGATGATTACAAGAAAATGGACTTTACTCAATGTGTTATAAATGAAAC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGAATTAAATTGGGATGATTACAAGAAAATGGACTTTACTCAATGTGTTATAAATGAAAC 1138
Query 1198 TCTTCGATTGGGAAATGTAGTTAGGTTTTTGCATCGCAAAGCACTCAAAGATGTTCGGTA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 TCTTCGATTGGGAAATGTAGTTAGGTTTTTGCATCGCAAAGCACTCAAAGACGTTCGGTA 1198
Query 1258 CAAAGGATACGATATCCCTAGTGGGTGGAAAGTGTTACCGGTGATCTCAGCCGTACATTT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAAAGGATACGATATCCCTAGTGGGTGGAAAGTGTTACCGGTGATCTCAGCCGTACATTT 1258
Query 1318 GGATAATTCTCGTTATGACCAACCTAATCTCTTTAATCCTTGGAGATGGCAACAGCAAAA 1377
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGATAATTCTCGTTACGACCAACCTAATCTCTTTAATCCTTGGAGATGGCAACAGCAAAA 1318
Query 1378 CAACGG-AGCGTCATCCTCAGGAAGTGGTAGTTTTTCGACGTGGGGAAACAACTACATGC 1436
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CAACGGGA-CGTCATCGTCAGGAAGTGGTAGTTTTTCGACGTGGGGAAACAACTACATGC 1377
Query 1437 CGTTTGGAGGAGGGCCAAGGCTATGTGCTGGTTCAGAGCTAGCCAAGTTAGAAATGGCAG 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CGTTTGGAGGAGGGCCAAGGCTATGTGCTGGTTCAGAGCTAGCCAAGTTAGAAATGGCAG 1437
Query 1497 TGTTTATTCATCATCTAGTTCTTAAATTCAATTGGGAATTAGCAGAAGATGATAAACCAT 1556
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGTTTATTCATCATCTTGTTCTTAAATTCAATTGGGAATTAGCAGAAGATGATAAACCAT 1497
Query 1557 TTGCTTTTCCTTTTGTTGATTTTCCTAACGGTTTGCCTATTAGGGTTTCTCGTATTCTGT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTGCTTTTCCTTTTGTTGATTTTCCTAACGGTTTGCCTATTAGGGTTTCTCGTATTCTGT 1557
Query 1617 aaaaaaaaaaaaaGATGAAAGTAtttttattctcttctt 1655
|||||||||||||||||||||||||||||||| ||||||
Sbjct 1558 AAAAAAAAAAAAAGATGAAAGTATTTTTATTCCCTTCTT 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5