BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50670.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485414 jgi|Araly1|485414|fgenesh2_kg.5__1406__AT3G50670.1 2364 0.0
> Ahg485414 jgi|Araly1|485414|fgenesh2_kg.5__1406__AT3G50670.1
Length=1556
Score = 2364 bits (1280), Expect = 0.0
Identities = 1454/1533 (95%), Gaps = 31/1533 (2%)
Strand=Plus/Plus
Query 64 AAAATCCTCCATCCGCTTCC-TCACGAAAAACCCTAGCACAGCTCCGAGATCCCTTTTGT 122
|||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||
Sbjct 45 AAAATCCTCCATCCGCTTCCTTCACGAAAAACCCTAGCAGAGCTCCGAGATCTC-TTTGT 103
Query 123 CGCCATGGGAGACTCCGGCGATCCTTTCTTGCGTAATCCAAACGCCGCTGTTCAAGCTCG 182
||||||||||||||||||||||||||| ||||||| || |||||||| ||||| || ||
Sbjct 104 TGCCATGGGAGACTCCGGCGATCCTTTCATGCGTAACCCTAACGCCGCCGTTCAGGCCCG 163
Query 183 CGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGATGGGTCAGAGCCACCC 242
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 164 CGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGATGGGTCAAAGCCACCC 223
Query 243 TACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAA 302
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 224 TACTGGCTTAACAAACAATCTCTTGAAGCTCTTTGAGCCACGGCCGCCATTGGAGTACAA 283
Query 303 ACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGGTATGGCTCAGTTTGTAAGTAA 362
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 284 ACCACCACCTGAGAAGAGAAAGTGCCCGCCTTATACAGGTATGGCTCAGTTTGTGAGTAA 343
Query 363 CTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTTC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTTC 403
Query 423 GCAGAAAAGGGAAAGAATTCATAAATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGA 482
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 404 GCAGAAAAGGGAGCGAATTCATAAATTACGACTGGAGAAAGGTGTTGAAAAGGCTGCGGA 463
Query 483 GGACTTAAAGAAATATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGAC 542
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 464 GGACTTAAAGAAATATGACCCGAATAATGATCCAAATGCTACTGGAGATCCATACAAGAC 523
Query 543 ATTGTTCGTTTCAAGACTTAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGA 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 524 ATTGTTCGTTTCAAGACTTAACTACGAATCCTCTGAGAGTAAGATTAAAAGGGAGTTTGA 583
Query 603 ATCTTATGGACCAATTAAACGGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATCTTATGGACCAATTAAACGGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAA 643
Query 663 AGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGCTGCATATAAGCAAGC 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGCTGCATATAAGCAAGC 703
Query 723 TGATGGACAAAAGATTGACGGCAGAAGAGTTTTGGTTGATGTGGAGAGAGGTAGAACCGT 782
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 704 TGATGGACAAAAGATTGACGGCAGAAGAGTTTTGGTTGATGTTGAGAGAGGTAGAACCGT 763
Query 783 CCCAAACTGGCGTCCACGCAGGCTTGGTGGTGGACTTGGGACCTCAAGAGTGGGTGGTGG 842
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 764 CCCAAACTGGCGTCCACGCAGGCTTGGTGGTGGACTTGGGACCTCAAGAATCGGTGGTGG 823
Query 843 TGAAGAAATTGTTGGGGAACAACAACCGCAAGGAAGAACCTCCCAGTCAGAGGAGCCATC 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGAAGAAATTGTTGGGGAACAACAACCGCAAGGAAGAACCTCCCAGTCAGAGGAGCCATC 883
Query 903 GAGACCACGGGAAGAGCGTGAGAAATCTCGGGAAAAGGGAAAAGAAAGGGAA--AG---G 957
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 884 GAGACCACGGGAAGAGCGTGAGAAATCTCGGGAAAAGGGAAAAGAAAGGGAACGAGAAAG 943
Query 958 -TCTCGTGAGCTGTCTCACGAACAACCTCGAGAGAGGTCTCGTGACAGACCGAGAGAGGA 1016
|| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 944 GTCGCGTGAGCTGTCTCATGAACAACCTCGAGAGCGGTCTCGTGACAGGCCGAGAGAGGA 1003
Query 1017 TAAGCACCACAGAGACCGAGACCAAGGAGGCAGAGACAGGGATAGGGACAGCAGACGTGA 1076
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1004 TAAGCACCACAGAGACCGAGACCAAGCAGGCAGAGACAGGGATAGAGACAGTAGACGTGA 1063
Query 1077 TCGTGACCGGACCCGTGACAGAGGAGACAGAGACCGCCGTGACCGTGACAGGGGACGGGA 1136
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TCGTGACCGGACCCGTGATAGAGGAGACAGAGACCGCCGTGACCGTGACAGGGGACGGGA 1123
Query 1137 TCGTACTTCAAGGGATCATGACCGAGACCGCAGTAGAAAGAAGGAGCGGGATTATGAAGG 1196
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 1124 TCGTACTTCAAGGGATCATGATCGAGACCGTAGTAGAAAGAAGGAGAGGGATTATGAAGG 1183
Query 1197 AGGTGAATATGAGCATGAGGGTGGTGGTCGGTCCCGTGAGAGAGATGCAGAGTAC---CG 1253
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1184 AGGTGAATATGAGCATGAGGGTGGTGGTCGGTCCCGTGAAAGAGATGCAGAGTACAAACG 1243
Query 1254 TGGCGAGCCAGAAGAAACTCGTGGCTACTATGAAGACGATCAAGGGGACACAGACCGGTA 1313
|||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1244 TGGCGAGCCAGAAGAAACGCATGGCTACTACGAAGAAGATCAAGGGGACACAGACCGGTA 1303
Query 1314 CAGTCATCGCTACGATAAAATGGAGGAAGATGACTTCAGATATGAACGTGAGTACAAGCG 1373
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1304 CAGTCATCGCTACGATAAAATGGAGGAAGATGACTTCAGATATGAACGCGAGTACAAGCG 1363
Query 1374 GTCTAAGAGATCAGAATCGCGAGAGTATGTTCGTTGATGTTTCATTCGGCTGTTTAAAAC 1433
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1364 GTCTAAGAGATCAGAATCGCGAGAGTATGTTCGTTGATGTTTCATTCGGTTGTTTAAAAC 1423
Query 1434 TCTAAAAACTTAAGAATCCTTTTTGTTTATTCTAAATCAAAACTTGATGCAATTCTGTTT 1493
||||||| |||||||||| ||||| | | || | || ||||| |||||||||
Sbjct 1424 TCTAAAA-CTTAAGAATC-TTTTT-T--A----AA--C----CT-GATGCGATTCTGTTT 1467
Query 1494 GTTACCTCTGAACTTGATTGCTATTTTTTCTCTTTTGAAGTTTGTCATATTATTAATCAA 1553
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 1468 GTTACCGCTGAACTTGATTGCTATTTTTTCTCTTTTGAAGTT-GTCATATTAT-ATT-AA 1524
Query 1554 AATCAAACCAACTTTAAAGTTGTGATGTTTTAT 1586
| || |||| |||| |||||||||||||| |||
Sbjct 1525 A-TCGAACCGACTTAAAAGTTGTGATGTTCTAT 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5