BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50685.1

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937908 jgi|Araly1|937908|scaffold_502099.1                        756    0.0  


> Ahg937908 jgi|Araly1|937908|scaffold_502099.1
Length=520

 Score =  756 bits (409),  Expect = 0.0
 Identities = 484/521 (93%), Gaps = 1/521 (0%)
 Strand=Plus/Plus

Query  63   tcttttatctctcacactcttaaaatgcttcttctatctccgatctctgcctctcttCCA  122
            |||||| ||||||   |||||||||||||| | |||||||||||||||||||||||||||
Sbjct  1    TCTTTT-TCTCTCTTTCTCTTAAAATGCTTATACTATCTCCGATCTCTGCCTCTCTTCCA  59

Query  123  CCGTCGTTTCACCGGGGTAATTTGATCCGGCGATCAATTAAGCCGTTAGGTAGGGTTGTT  182
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || 
Sbjct  60   CCGTCGTTTCACCGGGGAAATTTGATCCGGCGATCAATTAAGCCGTTAGGTAAGGTCGTA  119

Query  183  GCAAAGGCCAAGGACAACACCGACACTGGTGGATTTCTGGAGACGGCAGCTATAGCCGGT  242
            ||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  120  GCAAAGGCCAATGACAATACCGACACTGGCGGACTTCTGGAGACGGCAGCTATAGCCGGT  179

Query  243  AGTTTAGTGTCGACGCCGGTTATTGGATGGTCACTCTACACTTTGAAGACCACGGGATGT  302
             ||||||| |||||||||||||| |||||||| |||||| || | || |||||||| |||
Sbjct  180  GGTTTAGTCTCGACGCCGGTTATCGGATGGTCCCTCTACGCTCTCAAAACCACGGGGTGT  239

Query  303  GGCTTACCTCCCGGACCGGCCGGTTTAATCGGAGCGTTGGAAGGTGTGAGCTACTTGGTG  362
            ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  240  GGCTTACCTCCAGGACCGGCCGGTTCAATCGGAGCGTTGGAAGGTGTGAGCTACTTGGTG  299

Query  363  GTGGTTGGCATCGTGGGCTGGTCTTTGTACACTAAAACAAAAACTGGGTCAGGTCTGCCA  422
            |||||||||||||||||||||||| ||||||| || |||||||| ||||| |||||||||
Sbjct  300  GTGGTTGGCATCGTGGGCTGGTCTCTGTACACCAAGACAAAAACCGGGTCGGGTCTGCCA  359

Query  423  AATGGGCCATTTGGTTTGTTGGGTGCGGTCGAGGGTTTATCGTATCTGTCGGTTCTAGCC  482
            |||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct  360  AATGGGCCGTTTGGTTTGTTGGGTGCGGTAGAGGGCTTGTCGTATCTGTCGGTTCTAGCC  419

Query  483  ATTCTTGTGGTGTTTGGTATTCAGTTCTTGGATAATGGGTCGGTTCCAGGTCCACTTCCT  542
            |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  420  ATTCTTGTGGTGTTCGGTCTTCAGTTCTTGGATAATGGGTCGGTTCCTGGTCCACTTCCT  479

Query  543  AGTGACCAGTGTTTTGGTTAACCACGTGTAATGTCGTATAA  583
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  480  AGTGACCAGTGTTTTGGTTAACCACGTGTAATGTCGTATAA  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24970510635


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5