BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50710.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485419 jgi|Araly1|485419|fgenesh2_kg.5__1411__AT3G50710.1 1986 0.0
> Ahg485419 jgi|Araly1|485419|fgenesh2_kg.5__1411__AT3G50710.1
Length=1281
Score = 1986 bits (1075), Expect = 0.0
Identities = 1216/1285 (95%), Gaps = 5/1285 (0%)
Strand=Plus/Plus
Query 1 ATGGATAGGATTAGTAATCTGTCTGATGATTTGCTTTTGAAGATTGTTTCATCACTTCCT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGATAGGATTAGTAATCTGTCTGATGATTTGCTTTTGAAGATTTTTTCATCACTTCCT 60
Query 61 ACCAAAGATGTTGTCGTCACAATGCTTTTGTCAAAACGTTGGAAGTTTCTTTGGATGATG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 61 ACCAAAGATGTTGTCGTCACAATGCTTTTGTCAAAACGCTGGAAGTTTCTTTGGACGATG 120
Query 121 GTTCCAAAGCTTCGTTTTGATGATGAGTTTGAACTTGAGCCTTCCTATTACGGGAGATTT 180
|||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 GTTCCAAAACTTCGTTTTGACGATGAGTTTGAGCTTGATCCTTCCTATTACGGGAGATTT 180
Query 181 CTCAAGTATGTAGACAAATCAATGGTGTTGAATAGAGCTCAGGTTCTAGAAACAGTGAAG 240
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct 181 CTCAAGTATGTAGACAAATCAATGGTATTAAATAGGGCTCAGGTTCTAGAAACTGTGAAG 240
Query 241 TTCAACGTTGGTCCTTGTTGTAGCTCTGAAGATATAGCAACATGGATCAGAATCGGAATG 300
||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TTCGACGTTGGTCCTTGTTGCAGCTCTGAAGATATAGCAACATGGATCAGAATTGGAATG 300
Query 301 GTTCGCAATATGCGTGAACTTGAAATATCACATTGTGAAGGATATTTCAGGGAACATAGG 360
|||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 301 GTTCGCCATATGCGTGAACTTGAAATATCCCATTGTGAAGCATATTTCAGGGAACATAGG 360
Query 361 TCAATCAAACTACCAAAGAGTCTTTATACATATGAAAAACTCGAGGTCTTGAAACTCGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAATCAAACTACCAAAGAGTCTTTATACATATGAAAAACTCGAGGTCTTGAAACTCGCT 420
Query 421 TCCACGGTAGTTCTGAATGTTCCTATCGATGTTTGTTTTCCATCCTTGAAATCATTACAC 480
|| ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 421 TCTACGGTTGTTCTGAATGTTCCTATCGCTGTTTGCTTTCCATCCTTGAAATCATTACAC 480
Query 481 CTTGTGTGTGTAGAGTACAAAACCAAAAAGTCTCACCGCAGGCTTTTGTCGGGTTGTCCT 540
||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct 481 CTTGTGTGTGTAGAGTACAAAACCAAAAAATCTCATCGTAGGCTTTTATCGGGTTGTCCT 540
Query 541 GTTCTTGAAGAGTTGGTGTTGGACAAATCTTATAACAGTTTCCATGTGCGGTCTTTCTAT 600
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTCTTGAAGATTTGGTTTTGGACAAATCTTATAACAGTTTCCATGTGCGGTCTTTCTAT 600
Query 601 GTAGAAATACCTACTTTACAGAGCTTATCTATTCTTGATACATCTGGAGAACTGTACGGT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 GTAGAAATACCTACTTTACAGAGATTATCTATTCTTGATACATCTGGAGAACTGTACGGT 660
Query 661 GACTTTACGTTTGTGGTCAATGCCCCAG-CTTTGAAGTACTTCAACTTTGTAGACTTCTA 719
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 661 GACTTTACGTTTGTGGTCAATGCCCC-GTCTTTGAAGTACTTCAACTTTGTAGATTTCTA 719
Query 720 TGGCGACTTGTGCTTGAGAGATAATATGCCTGAGGTGGTTGATGTGAATATTAAAGTCAT 779
|||||||||||| |||||||||| ||||| |||||||||||| | |||||||||||||||
Sbjct 720 TGGCGACTTGTGTTTGAGAGATACTATGCATGAGGTGGTTGAGGCGAATATTAAAGTCAT 779
Query 780 TTACAGAAATCCCAAGAAGCTATTGGGACCTCTTAAATCAGTCAAGCGTCTCTCTTTATG 839
||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 TTACAAAAACCCCAAGAAGCTATTAGGACCTCTTAAATCAGTCAAGCGTCTCTCTTTATG 839
Query 840 TTTATCTCCTTCGACGACGCTTCATAACCATATGGAGTTCTATCAGCTTGTTCATTTGGA 899
||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 TTTATCTGCTTCGACAACGCTTCATAACCATATGGAGTTCTATCAGCTAGTTCATTTGGA 899
Query 900 GTTATGTGGAGACGCTCTAATGTGGTGGGATCTACTTACTTGGATGCTCCAAAGTTCTCC 959
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 900 GTTATGTGGAGACGCTCTAATGTGGTGGGATCTATTTACTTGGATGCTCGAAAGTTCTCC 959
Query 960 TAAACTACAAGTTCTCAAGATCTACGAATGCAAGTGTGAGGAACATGATTACTTAGACGA 1019
||| |||||||||||||| | ||| ||||| ||||||||||||| ||||||| || ||
Sbjct 960 AAAATTACAAGTTCTCAAGCTTTACAAATGCGAGTGTGAGGAACACGATTACTCCGAAGA 1019
Query 1020 TCCAATAGAAGAACATTGGGAAGAACCAAGTTCAGTTCCTCAATGTTTGTTGTTCCATCT 1079
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1020 TCCAATAGAAGATCATTGGGAAGAACCAAGTTCCGTTCCTGAATGTTTGTTGTTCCATCT 1079
Query 1080 CAATATTTTCGAGTGGAAATATTACAACGCAGGAGATGAAGAGAAAAAAGTAGTGGCGTA 1139
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1080 CAATATTTTCGAGTGGAAATATTACAACGCAGGAGAAGAAGAGAAGAAAGTGGTGGCGTA 1139
Query 1140 CATTCTAAAGAATGCAAGACAGTTAAAGACTGCAACTTTCTCTGCCGCTTCATATTTGTA 1199
|||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1140 CATTCTAAAGAACGCAAGACAGTTAAAGACTGCATCTTTCTCTGCT-C--CATATTTGTA 1196
Query 1200 TCCGAAGGAAGAGCGTTCGCGGGAACTCAATGAGTTGGTTTATATGGCTAGAGCTTCAAG 1259
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCCGAAGGAAGAGCGTTCGTGGGAACTCAATGAGTTGGTTTATATGGCTAGAGCTTCAAG 1256
Query 1260 CTCATGTCAGCTTCTATTGGATTGA 1284
||||||||||||||| ||||| |||
Sbjct 1257 CTCATGTCAGCTTCTGTTGGACTGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5